Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LRRC68 Gene 0 13.37 12.21 60.66 23.87 12.29 19.44 11.75 35.25 42.78 41.22 30.88 7.47 7.20 37.58 46.94 36.68 26.69 50.99 36.92 27.95 51.58 29.84 41.44 2 421905 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 221462 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 422370 Transcript 0 6.08 5.30 21.90 8.52 6.10 7.72 6.20 12.69 15.39 14.94 9.59 2.91 3.33 14.24 18.70 14.76 11.43 19.88 12.60 10.84 15.06 9.27 13.25 5 IG5 Intergenic 0 2.74 4.65 8.01 6.40 6.44 5.21 6.46 4.61 5.23 6.33 3.58 3.37 4.26 6.90 12.04 8.26 4.48 7.03 5.31 13.66 2.58 1.42 2.36 6 IG5_AR1 ActiveIntergenicRegion 0 5.21 3.13 0.54 3.87 7.56 9.56 6.79 0.86 4.55 0.57 0.60 3.36 2.46 2.54 6.64 4.09 2.10 8.29 16.25 15.69 5.15 0.00 5.62 7 IG5_SR1 SilentIntergenicRegion 0 3.43 3.86 5.51 7.30 4.98 4.58 2.77 4.61 4.94 4.26 3.59 1.49 2.37 7.57 11.40 7.21 2.91 5.68 3.89 9.59 4.50 2.25 2.42 8 IG5_AR2 ActiveIntergenicRegion 0 3.31 7.54 13.68 9.72 9.91 7.25 11.10 7.50 7.73 11.37 5.48 5.94 7.87 10.12 18.12 13.89 8.11 10.74 6.46 19.68 2.10 2.05 2.86 9 ER1a ExonRegion 0 9.22 8.29 36.73 9.46 8.60 16.29 11.11 19.09 22.80 29.74 26.53 4.66 2.83 31.10 42.89 33.08 22.10 40.88 42.04 22.73 44.83 25.21 41.68 10 E1a_E2a KnownJunction 0 27.12 33.81 175.19 59.73 67.49 86.14 50.52 128.32 113.89 108.55 106.71 24.01 20.94 57.21 82.95 94.33 49.37 142.72 94.59 78.62 158.34 69.87 85.11 11 E1a_E3a NovelJunction 0 0.00 0.00 5.26 1.50 0.00 0.00 0.00 6.53 3.30 2.93 10.16 0.00 6.01 10.24 22.25 7.69 4.77 10.11 7.34 3.26 3.15 19.41 4.18 12 E1a_E4a NovelJunction 0 0.00 0.00 2.72 0.00 0.00 0.00 2.25 2.55 4.89 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.99 0.00 0.00 11.24 0.00 0.00 13 I1 Intron 1 4.82 2.83 7.22 4.11 3.51 1.82 5.47 6.19 6.80 6.09 1.47 2.49 2.85 2.36 10.93 9.57 7.41 12.10 6.81 10.81 5.72 1.12 11.61 14 I1_SR1 SilentIntronRegion 0 5.80 2.73 6.69 3.94 4.62 2.53 6.47 5.64 6.57 5.55 1.34 2.01 3.00 2.66 11.16 8.53 7.44 10.75 7.01 11.66 5.53 0.96 10.76 15 I1_AR1 ActiveIntronRegion 0 3.18 6.59 8.20 1.42 4.83 0.00 5.53 8.11 4.79 3.72 1.92 7.98 2.21 3.50 7.74 11.75 2.31 12.39 6.18 9.76 4.16 1.12 12.36 16 I1_SR2 SilentIntronRegion 1 4.24 1.73 5.05 3.29 2.21 1.30 4.79 4.90 5.15 5.63 1.20 3.03 3.27 1.71 12.19 9.23 6.80 11.18 7.31 10.20 6.12 0.98 12.20 17 I1_SR3 SilentIntronRegion 0 4.62 3.04 7.61 4.13 3.36 1.76 5.37 6.95 7.73 6.38 1.63 2.46 2.43 2.35 9.92 9.65 7.64 13.29 6.73 10.80 5.69 1.28 11.88 18 I1_AR3 ActiveIntronRegion 0 5.51 3.36 13.86 9.39 3.97 3.02 5.96 8.99 10.30 9.52 2.48 0.00 1.27 3.74 11.45 16.27 8.02 18.58 6.83 11.40 6.78 0.00 9.69 19 I1_SR4 SilentIntronRegion 1 3.72 6.11 11.81 5.56 4.21 2.53 5.20 9.05 5.86 8.16 1.58 0.56 1.21 2.38 15.68 12.96 9.77 11.44 5.86 10.22 7.22 0.65 8.18 20 I1_AR4 ActiveIntronRegion 1 5.69 4.84 16.26 8.09 5.12 0.39 3.64 6.03 6.84 7.84 1.49 3.72 4.96 3.46 16.74 13.12 9.61 12.55 4.97 10.59 4.74 1.60 16.41 21 I1 Intron 0 5.95 2.54 4.82 3.37 4.28 2.55 6.01 7.21 5.52 5.04 2.57 4.68 3.02 3.60 11.34 9.68 7.47 9.15 4.68 9.99 7.26 2.09 10.12 22 I1_SR1 SilentIntronRegion 0 6.61 2.91 5.35 3.98 4.78 2.86 6.74 8.24 6.20 5.66 2.97 5.43 3.51 4.14 12.52 10.83 8.17 10.07 5.13 11.11 7.86 2.19 10.90 23 ER2a ExonRegion 0 18.06 33.28 203.80 79.14 37.24 60.68 34.98 128.58 150.72 123.98 104.46 18.64 13.21 93.72 109.83 118.31 71.85 177.61 86.26 94.42 166.72 88.68 109.20 24 E2a_E3a KnownJunction 0 34.52 33.88 205.08 104.42 24.79 24.13 3.80 131.89 150.95 146.16 102.71 18.46 20.45 97.71 196.68 112.11 98.36 120.09 126.59 117.54 193.92 90.99 133.85 25 ER3a ExonRegion 0 18.73 31.48 255.28 104.79 16.05 25.51 12.49 139.85 173.86 174.50 97.19 21.93 24.78 106.56 153.51 105.70 94.65 127.86 101.59 106.98 163.07 84.11 140.13 26 E3a_E4a KnownJunction 0 39.41 62.82 288.67 85.74 14.86 30.27 27.69 151.85 192.45 185.97 155.72 35.86 47.56 145.09 165.77 150.56 158.58 224.55 93.18 103.80 191.08 87.81 188.40 27 ER4a ExonRegion 0 25.48 34.63 252.09 99.84 29.46 37.91 22.93 155.70 200.72 172.61 150.98 42.18 39.05 133.71 155.09 153.49 117.26 235.80 157.50 116.37 235.69 126.54 177.77 28 E4_Da NovelBoundary 0 3.56 0.00 5.17 3.40 0.00 0.00 0.00 1.73 1.50 0.00 5.05 0.00 0.00 4.83 5.32 0.00 12.06 12.23 3.48 0.00 13.47 0.00 8.37 29 E4a_E5a KnownJunction 0 46.38 43.22 270.87 114.60 41.43 26.52 31.27 145.03 214.47 178.44 157.09 60.02 42.21 140.39 192.47 136.55 129.41 213.28 118.03 114.54 249.58 111.93 184.73 30 ER5a ExonRegion 0 31.51 35.93 248.08 91.62 39.06 64.62 40.50 108.38 160.55 167.73 122.73 32.09 33.99 133.85 143.33 157.95 94.67 220.43 126.30 89.21 166.10 104.03 169.02 31 E5a_E6a KnownJunction 0 54.90 48.02 223.71 99.55 49.32 70.41 39.00 121.62 145.60 158.14 122.93 12.60 42.85 86.23 166.39 152.95 92.10 253.98 200.29 106.55 223.08 114.75 140.25 32 ER5b ExonRegion 0 32.21 36.87 182.79 72.11 31.99 50.87 30.51 109.49 127.97 125.51 96.64 25.41 28.75 93.35 147.84 132.84 60.85 225.10 147.08 84.46 176.97 93.58 114.15 33 E6_Aa NovelBoundary 0 3.56 0.00 6.45 0.00 0.00 2.90 1.90 0.00 1.79 1.13 0.00 0.00 0.00 0.00 0.00 0.00 4.11 18.74 0.00 8.50 2.41 0.00 3.50 34 ER6a ExonRegion 0 28.57 33.60 179.57 53.67 25.34 54.02 22.55 85.26 111.86 113.50 82.01 14.36 24.79 102.24 106.08 97.04 68.38 157.96 102.42 69.31 159.62 69.72 128.24 35 E6_Da KnownBoundary 0 0.00 2.96 13.39 10.02 0.00 2.84 2.16 6.41 13.22 8.09 2.58 6.30 6.66 23.60 31.15 22.99 8.70 30.47 13.55 17.96 2.53 5.82 4.10 36 E6a_E6b KnownJunction 0 21.34 34.40 185.24 64.26 11.63 35.89 14.97 103.55 126.16 113.63 80.97 61.37 39.61 93.18 80.72 79.81 66.39 158.48 55.53 53.95 172.54 44.64 152.97 37 ER6b ExonRegion 0 1.79 3.43 23.48 4.50 1.83 4.41 5.31 8.70 10.30 11.97 6.79 1.13 6.68 13.52 19.46 21.42 12.63 23.26 8.31 12.58 8.74 4.76 6.06 38 E6_Ab KnownBoundary 0 3.41 0.00 24.72 1.53 0.00 8.52 18.33 10.64 13.80 15.63 10.21 0.00 7.14 4.77 8.90 19.48 28.33 20.93 3.58 16.17 10.38 0.00 3.33 39 ER6c ExonRegion 0 32.66 41.97 237.94 56.50 31.76 72.55 33.54 141.51 155.29 154.45 102.93 21.48 21.82 112.27 119.66 115.93 89.00 175.11 118.37 96.88 179.95 92.21 134.29 40 E6_Db KnownBoundary 0 0.00 0.00 26.43 5.53 0.00 2.84 0.00 11.30 11.89 16.55 12.63 0.00 0.00 9.18 26.70 7.60 3.83 13.72 4.80 5.94 5.00 14.57 3.76 41 E6b_E6c KnownJunction 0 37.34 18.62 178.94 60.40 26.57 78.59 31.09 126.51 149.10 111.77 82.55 18.31 11.53 91.88 102.23 102.45 90.88 118.02 75.01 93.13 205.16 59.34 139.48 42 ER6d ExonRegion 0 4.95 3.87 18.40 6.83 5.80 6.73 5.43 11.35 14.40 17.15 5.76 0.70 2.02 7.82 11.00 8.98 11.20 20.12 9.97 9.71 13.33 6.78 11.90 43 E6_Ac KnownBoundary 0 18.30 3.35 26.43 18.58 0.00 10.05 2.21 22.39 9.95 11.47 2.47 0.00 12.99 9.71 18.30 11.71 4.77 20.69 8.85 18.02 4.76 16.53 11.78 44 ER6e ExonRegion 0 27.00 31.10 168.16 55.72 27.26 61.12 18.62 100.84 114.67 108.34 98.54 18.83 23.87 97.97 112.35 94.26 71.74 142.33 82.62 79.12 143.79 81.76 107.63 45 E6_Dc KnownBoundary 0 0.00 17.89 27.97 11.49 10.53 0.00 6.71 13.14 10.97 14.80 4.21 0.00 0.00 2.47 8.90 27.51 13.18 54.10 0.00 14.25 5.13 11.21 9.65 46 E6c_E6d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 ER6f ExonRegion 0 6.10 5.65 15.45 8.83 5.44 6.05 7.42 10.37 11.09 13.11 3.96 4.42 4.34 7.50 12.52 11.07 8.63 19.23 10.86 8.74 12.15 8.05 9.56 48 E6_Ad KnownBoundary 0 22.30 27.96 141.09 60.27 21.39 11.98 20.23 77.34 81.60 75.32 39.75 31.06 6.01 37.38 69.84 42.98 58.91 102.97 54.87 51.58 91.92 34.66 65.30 49 ER6g ExonRegion 0 30.35 27.74 167.02 67.67 23.02 40.46 28.40 92.25 99.42 104.22 76.75 22.05 19.63 104.27 128.24 82.37 44.68 118.06 67.41 85.91 138.59 75.49 84.57 50 E6_Dd NovelBoundary 0 0.00 0.00 5.12 3.36 0.00 0.00 8.13 9.24 4.08 3.52 0.00 0.00 0.00 4.71 8.90 3.59 4.77 20.27 0.00 9.78 2.90 3.12 0.00 51 E6d_E7a KnownJunction 0 20.23 17.83 176.90 59.03 20.29 47.25 9.98 73.93 75.98 84.86 61.23 25.51 6.49 78.82 97.04 44.35 53.67 73.91 68.80 71.40 136.34 60.68 97.40 52 E7_Aa NovelBoundary 0 0.00 0.00 4.85 1.83 3.14 2.61 0.00 6.08 3.44 13.54 7.21 0.00 0.00 4.77 0.00 0.00 3.46 14.67 4.05 3.00 0.00 2.88 4.27 53 ER7a ExonRegion 0 34.41 25.97 173.75 74.21 27.80 51.62 20.62 78.64 95.23 102.82 58.32 17.97 16.74 95.14 136.10 69.32 58.31 103.30 74.54 65.37 118.88 62.14 98.69 54 E7_Da KnownBoundary 0 12.74 6.71 53.19 27.14 14.86 9.54 6.27 15.24 13.08 18.27 9.69 0.00 6.66 14.13 19.66 0.00 4.77 15.01 9.60 2.49 8.46 8.51 11.78 55 E7a_E7b KnownJunction 0 31.71 18.42 162.56 61.20 20.97 23.11 23.94 96.98 107.72 101.24 31.22 0.00 12.50 59.74 71.95 16.32 50.02 60.81 35.30 68.33 98.10 31.29 48.57 56 ER7b ExonRegion 0 5.12 5.07 27.31 8.57 6.62 4.99 5.00 11.54 9.76 12.07 11.91 2.37 1.71 16.00 21.53 13.29 13.17 15.42 10.55 4.99 10.66 9.57 12.22 57 E7_Ab KnownBoundary 0 16.74 9.60 38.67 22.08 7.81 22.49 6.14 18.52 16.09 14.59 15.79 25.06 0.00 21.90 10.38 18.71 27.49 23.42 4.24 7.99 10.81 22.84 23.56 58 ER7c ExonRegion 0 13.58 18.77 142.79 61.38 14.42 24.44 17.33 81.47 81.80 76.99 63.10 15.33 12.64 80.07 101.81 78.80 48.97 85.01 67.13 40.44 99.45 61.37 76.33 59 E7_Db KnownBoundary 0 16.00 37.89 184.91 73.45 19.27 11.19 8.52 136.90 133.91 140.22 119.14 44.26 0.00 98.01 100.75 84.17 49.28 129.75 170.92 49.60 134.55 150.94 112.08 60 E7b_E7c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 ER7d ExonRegion 0 23.58 19.36 73.24 36.55 11.34 20.07 12.66 47.82 54.98 55.26 48.50 6.97 5.12 45.24 49.41 42.71 31.77 55.56 47.54 17.46 63.12 49.09 47.27 62 E7_Ac KnownBoundary 0 50.60 25.26 23.62 15.02 29.54 9.77 23.01 15.44 14.00 16.28 2.21 6.30 6.82 51.74 39.56 16.58 27.68 33.83 25.60 21.16 40.90 19.66 41.06 63 ER7e ExonRegion 0 27.22 16.57 57.12 31.11 19.57 28.39 12.87 33.93 41.37 39.32 27.47 3.05 1.52 49.50 60.51 35.96 40.47 59.31 54.61 25.88 51.28 34.01 43.17 64 E7_Dc KnownBoundary 0 6.08 3.29 6.62 8.19 0.00 11.13 0.00 1.93 7.75 14.72 2.00 0.00 0.00 2.47 4.45 7.78 3.74 2.36 4.24 8.76 5.87 0.00 0.00 65 E7c_E7d KnownJunction 0 36.67 23.02 76.49 40.55 15.70 24.08 0.00 51.79 57.70 62.02 90.55 6.30 6.66 90.41 80.97 56.14 62.09 64.05 52.61 50.49 89.21 42.86 62.23 66 ER7f ExonRegion 0 3.48 3.92 13.58 7.88 3.24 6.39 3.27 10.86 14.84 11.50 3.61 2.86 0.01 8.22 4.56 5.67 4.87 11.89 6.86 5.92 6.37 1.69 7.51 67 E7_Ad KnownBoundary 0 6.74 5.53 20.49 12.25 11.71 2.21 8.13 18.03 13.02 16.33 6.79 0.00 0.00 2.12 13.35 3.85 12.62 8.46 19.11 5.43 8.65 0.00 15.62 68 ER7g ExonRegion 0 29.71 18.55 77.42 45.49 14.00 32.11 12.48 40.18 62.93 49.50 50.70 7.71 5.26 81.38 85.34 54.15 55.67 64.15 67.71 44.76 72.56 55.37 66.68 69 E7_Dd KnownBoundary 0 8.67 10.06 75.04 35.79 10.78 13.86 13.29 29.37 61.34 46.42 29.85 0.00 12.17 26.31 40.67 24.27 3.65 47.01 22.12 34.77 26.26 23.64 16.48 70 ER7h ExonRegion 0 15.02 9.87 33.18 14.51 13.68 17.74 10.76 23.32 31.96 23.82 25.51 5.98 5.24 32.39 43.15 28.11 18.10 29.34 29.03 23.10 39.12 24.76 32.26