Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MARK4 Gene 0 33.53 60.63 102.95 58.76 30.13 36.08 25.21 44.94 102.32 52.36 67.03 23.63 19.60 52.32 49.43 42.71 46.86 79.12 116.01 57.57 104.27 57.03 67.13 2 262893 Transcript 0 0.72 1.90 1.83 2.44 0.14 1.61 0.80 1.81 2.77 1.62 2.54 1.51 0.41 1.82 1.21 3.33 1.71 3.30 4.75 1.42 5.09 1.20 4.77 3 300843 Transcript 0 4.20 23.65 20.21 26.22 4.95 25.37 1.74 24.36 115.59 9.60 3.14 0.00 3.38 2.15 3.83 1.88 0.00 27.42 18.30 46.12 5.32 2.09 3.16 4 262891 Transcript 0 40.53 26.97 120.19 27.00 57.98 23.40 45.18 43.00 24.68 32.88 68.28 39.16 12.82 101.54 87.89 32.90 57.22 45.60 52.24 35.09 103.79 33.74 43.11 5 IG11_AR1 ActiveIntergenicRegion 0 1.68 0.83 36.10 20.51 6.77 3.12 2.83 17.37 28.90 11.87 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.78 1.26 6.27 6 IG11_AR2 ActiveIntergenicRegion 0 20.81 2.03 3.68 4.09 7.58 12.84 3.88 3.17 4.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.61 18.89 7 ER1a ExonRegion 0 0.71 1.71 1.07 0.57 0.12 0.32 0.51 0.19 0.57 0.79 3.18 0.35 0.67 3.87 1.99 0.65 1.26 1.56 4.26 2.12 5.30 0.84 1.18 8 E1_Ab KnownBoundary 0 17.26 25.19 17.80 14.55 0.00 5.11 1.81 2.55 19.50 9.91 29.32 6.30 5.84 36.08 22.87 15.38 17.67 29.56 18.26 35.99 35.03 11.51 11.95 9 ER1b ExonRegion 1 7.00 25.44 30.92 17.89 10.41 11.40 2.24 13.17 39.19 16.83 52.22 7.79 4.01 32.60 22.63 32.53 24.67 62.12 35.85 46.50 63.63 22.77 31.45 10 E1a_E2a KnownJunction 0 9.93 44.79 68.03 38.39 18.34 38.50 10.38 31.46 70.80 26.94 57.91 22.06 6.01 26.78 29.79 33.50 25.43 102.51 63.63 75.74 66.41 36.50 34.40 11 E1a_E3a NovelJunction 0 0.00 2.50 1.51 0.00 7.30 2.78 4.20 0.00 6.31 2.53 0.00 0.00 0.00 2.24 0.00 0.00 0.00 2.49 0.00 3.07 14.21 0.00 4.35 12 I1 Intron 0 8.09 5.93 8.92 6.74 5.69 2.22 5.25 4.25 10.34 6.68 4.56 5.11 5.11 4.44 10.14 11.53 11.29 20.79 17.85 11.25 20.33 4.85 11.35 13 I1_SR1 SilentIntronRegion 0 8.27 3.19 7.10 5.01 3.18 1.56 3.87 4.36 10.59 8.27 5.54 6.60 6.67 4.97 12.51 11.01 12.73 22.90 23.59 14.26 24.14 4.76 12.30 14 I1_AR1 ActiveIntronRegion 0 9.82 8.40 13.74 11.33 9.46 5.92 6.45 4.57 18.23 8.03 6.18 3.78 5.44 7.07 13.26 20.69 18.98 30.04 24.51 12.51 34.70 5.33 16.81 15 I1_AR2 ActiveIntronRegion 0 13.20 7.58 7.98 4.21 2.24 5.19 7.46 4.39 9.17 7.63 4.03 5.68 3.08 4.67 8.64 9.57 6.58 16.77 8.88 5.14 20.06 5.32 9.15 16 I1_AR3 ActiveIntronRegion 0 6.60 4.15 14.12 6.17 3.10 1.90 3.18 5.51 6.28 2.91 3.29 1.57 0.85 2.58 9.78 14.89 4.35 25.10 7.84 5.92 18.64 4.79 7.00 17 I1_SR2 SilentIntronRegion 0 7.31 10.04 10.13 9.23 9.94 2.41 7.45 3.82 9.82 4.71 3.13 3.73 3.79 3.60 6.34 10.65 9.96 15.86 11.14 8.27 12.71 4.92 10.26 18 E2_Aa NovelBoundary 0 3.19 3.35 14.34 9.99 8.15 8.23 5.74 8.54 8.01 4.67 4.69 0.00 0.00 11.30 0.00 4.19 0.00 28.73 3.95 0.00 8.09 3.12 7.85 19 ER2a ExonRegion 0 26.34 47.17 109.19 59.03 16.75 32.58 27.88 51.18 127.65 60.49 93.05 14.60 20.67 73.32 49.97 41.76 63.87 113.39 107.21 101.94 116.11 69.03 78.66 20 E2_Da NovelBoundary 0 3.26 3.35 5.09 6.49 8.66 2.56 12.37 8.63 12.04 16.92 4.53 11.85 0.00 4.83 0.00 8.29 13.18 17.66 4.80 11.89 24.34 5.76 12.55 21 E2a_E3a KnownJunction 0 53.12 50.71 184.77 111.91 19.61 35.21 52.51 91.60 196.00 98.05 100.60 16.96 59.57 114.72 51.55 94.93 95.56 209.22 169.13 119.33 149.62 107.22 202.74 22 E3_Aa NovelBoundary 0 13.26 6.18 18.54 15.88 11.38 8.35 4.50 8.87 12.70 14.64 7.26 13.65 12.66 7.36 0.00 23.41 13.28 18.53 4.80 9.72 13.96 3.12 12.46 23 ER3a ExonRegion 0 30.92 48.58 190.11 105.37 47.32 35.45 36.78 102.07 211.98 104.01 164.87 36.24 43.51 139.01 68.34 99.84 98.23 226.18 180.86 138.61 222.29 105.64 161.95 24 E3a_E4a KnownJunction 0 17.11 56.44 204.96 130.62 54.07 46.05 43.77 115.87 222.02 95.23 190.73 62.12 69.15 154.39 106.19 121.68 120.71 237.03 250.74 151.68 262.43 149.78 172.95 25 E4_Aa NovelBoundary 0 2.82 3.35 9.22 20.11 3.82 5.11 10.25 1.93 5.84 7.66 0.00 0.00 0.00 4.65 8.90 3.33 0.00 8.17 12.33 5.37 6.30 2.51 15.71 26 ER4a ExonRegion 0 12.18 46.32 207.94 123.66 51.28 39.63 44.04 101.63 245.33 109.73 202.20 53.72 30.63 178.79 105.63 107.54 129.34 191.49 252.94 165.05 263.95 127.43 140.78 27 E4a_E5a KnownJunction 1 13.04 41.70 193.02 103.92 61.46 57.98 75.39 71.26 244.90 107.31 176.26 70.67 20.29 148.16 61.07 89.38 142.96 138.91 224.10 182.80 303.57 109.55 109.52 28 ER5a ExonRegion 0 22.54 51.18 194.09 111.03 43.99 51.37 51.21 73.49 242.66 116.22 187.64 55.63 44.13 108.94 94.25 91.01 117.88 208.52 217.14 166.28 270.46 117.47 143.81 29 E5_Da KnownBoundary 0 3.78 0.00 1.83 7.16 0.00 4.32 4.06 5.09 6.51 8.57 2.42 0.00 0.00 0.00 5.19 15.98 0.00 11.57 3.58 2.49 20.02 2.51 7.34 30 E5a_E5b KnownJunction 0 44.67 79.59 217.76 122.93 31.24 66.61 51.36 89.62 240.36 116.63 175.20 59.57 70.61 83.17 133.63 101.00 91.54 240.89 296.48 186.25 206.40 137.35 210.51 31 ER5b ExonRegion 0 1.47 4.00 4.42 6.75 0.29 4.51 1.89 5.24 7.75 4.07 4.44 4.19 0.57 1.59 1.63 9.34 3.88 8.35 9.98 2.13 9.95 2.75 13.13 32 E5_Ab KnownBoundary 0 3.70 0.00 1.83 8.39 3.23 0.00 0.00 0.00 5.09 0.00 0.00 6.00 0.00 2.47 0.00 4.36 4.77 6.92 23.06 0.00 2.59 0.00 8.37 33 ER5c ExonRegion 0 45.72 75.04 237.46 141.99 46.90 55.59 51.96 105.58 275.29 131.55 173.41 65.31 31.22 122.44 124.26 103.81 124.02 218.46 282.27 154.07 258.65 124.92 214.88 34 E5b_E6a KnownJunction 0 56.01 130.50 266.13 171.54 47.71 59.34 59.40 127.37 302.34 161.09 192.84 60.02 33.28 99.71 74.42 100.57 132.40 202.62 253.00 137.10 267.37 115.36 133.93 35 ER6a ExonRegion 0 47.31 123.66 233.36 134.66 48.45 81.01 68.68 87.21 235.93 139.02 174.33 65.25 45.50 129.93 82.81 100.90 108.18 152.00 247.62 138.56 253.77 112.00 116.85 36 E6_Da NovelBoundary 0 15.85 5.46 7.92 13.88 0.00 2.73 1.77 0.00 2.55 6.18 2.21 0.00 0.00 2.18 6.43 0.00 0.00 2.57 3.76 0.00 8.71 0.00 12.12 37 E6a_E7a KnownJunction 0 70.75 148.72 200.11 113.24 43.80 101.31 84.97 63.79 170.72 117.31 148.56 64.82 28.89 122.61 94.94 110.14 83.59 168.01 172.33 144.20 203.56 133.18 134.45 38 ER7a ExonRegion 0 57.89 126.77 165.53 103.86 57.43 71.73 68.86 70.86 169.83 111.63 128.52 58.26 34.31 98.20 102.17 88.29 94.93 195.90 229.86 116.63 208.04 113.27 144.50 39 E7a_E8a KnownJunction 0 20.15 132.48 145.29 89.23 40.75 92.62 57.99 76.97 136.17 77.39 99.08 66.77 39.61 52.50 77.76 102.02 74.99 115.03 158.22 121.51 147.83 66.07 96.63 40 ER8a ExonRegion 0 63.46 121.59 217.84 163.81 61.72 96.99 62.65 111.69 224.42 132.10 175.97 71.76 46.47 109.90 94.73 128.17 128.96 199.13 273.65 130.44 244.02 131.17 179.53 41 E8_Da NovelBoundary 0 9.78 3.09 12.95 14.68 3.57 20.27 0.00 6.45 13.51 4.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.51 21.27 5.88 10.63 8.82 4.18 42 E8a_E9a KnownJunction 0 73.20 130.57 292.15 181.93 66.81 95.06 83.78 150.70 263.39 161.23 229.85 75.77 60.39 110.54 109.40 131.85 122.49 234.63 286.03 143.17 322.48 127.67 212.21 43 E9_Aa NovelBoundary 0 10.15 5.92 18.75 15.15 0.00 12.61 5.87 16.80 7.64 0.00 4.74 0.00 0.00 0.00 0.00 24.52 3.55 27.48 0.00 11.38 12.17 2.57 33.72 44 ER9a ExonRegion 0 49.08 108.82 228.78 149.21 58.65 74.76 61.21 115.22 242.53 137.92 192.56 63.08 80.06 85.95 114.11 95.67 129.16 164.75 256.68 127.23 237.08 123.24 153.23 45 E9a_E10a KnownJunction 0 86.16 184.31 265.04 167.18 108.74 72.86 48.76 136.49 268.37 140.46 170.83 62.72 123.53 109.95 113.48 100.66 87.52 232.43 342.60 135.25 181.01 148.06 185.49 46 ER10a ExonRegion 0 66.00 130.00 204.22 121.06 57.33 83.70 41.21 111.28 241.90 127.97 146.20 54.83 82.80 117.96 118.79 94.27 87.29 187.70 315.29 128.57 210.49 138.89 144.88 47 E10a_E11a KnownJunction 1 28.82 83.01 197.15 101.29 35.82 101.70 22.79 89.34 215.85 142.69 97.29 64.07 46.26 105.01 83.94 38.88 95.09 145.75 222.03 108.98 196.88 72.44 86.99 48 E10a_E12b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 ER11a ExonRegion 0 38.82 56.89 138.37 66.30 31.51 66.98 28.46 57.65 140.34 99.59 94.51 42.19 48.07 68.81 90.19 66.72 62.61 122.32 194.53 89.04 165.40 98.88 89.62 50 E11a_E12a KnownJunction 1 82.09 78.80 202.27 102.95 30.73 95.85 71.06 92.13 216.52 122.52 123.35 36.61 74.35 109.78 174.92 150.73 60.68 272.06 443.50 149.76 166.74 130.79 144.69 51 I11 Intron 0 5.97 6.87 8.32 8.53 8.10 4.58 5.56 4.39 10.49 5.07 1.19 1.87 2.27 1.27 4.03 4.80 2.72 14.25 11.98 7.81 9.52 5.57 13.63 52 I11_SR1 SilentIntronRegion 0 5.98 6.88 8.33 8.55 8.11 4.59 5.57 4.40 10.51 5.08 1.19 1.87 2.27 1.27 4.04 4.81 2.72 14.28 12.00 7.83 9.53 5.58 13.66 53 E12_Aa NovelBoundary 0 11.93 5.85 12.51 13.32 0.00 7.55 0.00 4.39 10.45 3.33 2.68 0.00 0.00 0.00 0.00 21.53 4.58 16.42 4.80 5.62 8.83 5.39 28.17 54 ER12a ExonRegion 1 48.96 48.70 156.04 64.09 30.42 86.57 40.56 69.91 160.27 102.77 115.06 30.19 69.24 105.31 161.48 106.37 58.11 185.16 288.36 122.84 154.90 103.02 127.90 55 E12_Ab KnownBoundary 0 35.93 51.96 168.21 64.83 33.28 80.58 35.02 66.99 156.77 95.82 106.29 30.16 26.78 103.71 144.26 55.03 76.58 142.31 160.29 105.91 167.29 63.44 92.62 56 ER12b ExonRegion 0 32.46 52.44 146.82 59.31 24.69 51.60 23.69 58.87 145.08 97.82 98.99 43.85 35.84 77.52 93.96 65.72 74.67 154.22 164.41 80.80 176.03 80.13 101.95 57 E12b_E13a KnownJunction 0 48.53 105.31 244.14 131.62 74.11 94.55 31.27 146.31 257.20 151.98 200.00 64.37 61.03 92.12 156.99 143.47 119.68 264.80 302.31 171.87 293.57 132.33 222.80 58 ER12c ExonRegion 0 46.56 81.34 242.62 103.58 48.16 78.85 27.80 120.99 234.67 146.80 164.30 69.27 51.59 95.82 174.08 139.69 118.83 269.77 299.42 142.55 257.83 129.18 199.69 59 I12_AR2 ActiveIntronRegion 0 6.35 13.07 7.18 6.81 0.76 0.00 3.78 5.19 7.94 9.18 0.00 4.33 0.00 3.25 2.49 5.94 8.96 11.09 6.37 10.94 4.41 4.17 13.84 60 I12_AR3 ActiveIntronRegion 0 2.59 15.36 4.22 9.54 1.49 0.00 2.06 5.19 9.88 9.30 0.00 0.00 0.00 2.53 3.22 5.28 3.30 19.50 6.37 12.77 3.67 2.55 11.09 61 I12_SR2 SilentIntronRegion 0 4.44 16.68 5.02 8.45 2.68 0.00 1.32 5.19 9.88 7.57 1.74 0.00 0.00 1.62 6.96 2.97 3.30 21.99 3.50 13.83 2.42 2.08 11.75 62 I12_AR4 ActiveIntronRegion 0 6.44 14.67 6.49 11.98 3.36 0.55 1.35 5.33 7.12 8.98 2.63 3.87 0.00 0.07 8.95 8.98 4.78 29.49 5.42 15.53 11.16 1.29 15.43 63 I12_AR5 ActiveIntronRegion 0 7.44 4.77 9.65 15.26 6.60 2.92 4.45 3.49 10.09 8.14 0.86 2.93 5.77 1.97 7.31 4.96 6.64 18.59 14.91 8.15 10.60 3.70 14.62 64 E13_Aa NovelBoundary 0 7.33 12.83 11.95 17.15 24.02 10.96 0.00 11.01 13.19 3.25 9.74 6.30 6.82 2.35 8.90 12.48 3.55 20.52 11.95 18.54 26.69 3.06 24.16 65 ER13a ExonRegion 0 39.75 50.98 188.82 88.34 33.81 61.01 25.73 87.77 173.27 92.30 116.85 39.51 43.47 82.80 80.48 86.62 84.71 134.74 139.64 83.35 189.52 71.72 106.11 66 E13a_E14a KnownJunction 0 24.60 38.61 180.15 81.87 31.41 81.49 16.03 85.97 168.31 80.13 82.02 66.77 25.00 52.39 41.91 56.40 94.53 154.54 144.38 44.81 154.88 53.09 142.21 67 I13_SR1 SilentIntronRegion 0 11.36 6.94 10.74 8.66 9.41 4.32 3.41 4.24 10.42 2.15 3.59 0.00 1.13 3.75 6.94 13.19 8.01 13.85 23.14 10.38 12.48 14.78 18.18 68 I13_AR1 ActiveIntronRegion 0 5.06 7.61 12.66 8.33 3.71 3.60 2.79 6.67 11.64 4.69 5.05 2.15 2.23 5.17 9.12 9.23 9.82 19.08 19.97 11.65 9.60 7.66 13.20 69 E14_Aa NovelBoundary 1 3.33 2.83 0.00 9.82 0.00 4.20 6.27 8.13 11.14 1.16 2.68 25.06 6.82 0.00 15.20 0.00 0.00 3.69 17.41 6.52 11.06 8.08 11.52 70 ER14a ExonRegion 0 17.70 38.11 95.80 41.53 16.51 29.45 20.32 39.45 93.11 45.64 65.90 24.16 22.36 53.59 55.74 38.89 51.25 64.14 88.65 45.82 121.43 48.60 63.79 71 E14a_E15a KnownJunction 0 6.52 18.35 19.04 26.54 8.15 26.18 0.00 31.38 119.82 9.27 2.58 0.00 6.33 0.00 5.19 0.00 0.00 21.51 17.60 57.85 4.82 3.12 0.00 72 E14a_E16a KnownJunction 0 40.53 26.97 120.19 27.00 57.98 23.40 45.18 43.00 24.68 32.88 68.28 39.16 12.82 101.54 87.89 32.90 57.22 45.60 52.24 35.09 103.79 33.74 43.11 73 ER15a ExonRegion 0 6.08 33.58 23.25 26.01 2.37 29.78 3.44 25.19 115.81 12.31 6.84 0.00 3.81 2.27 6.31 5.65 0.00 29.49 25.24 40.64 11.16 3.15 9.47 74 E15_Da NovelBoundary 0 0.00 18.48 8.43 22.51 12.14 5.79 0.00 11.09 7.90 6.31 2.53 0.00 0.00 7.18 4.45 10.94 4.02 21.93 9.51 8.25 3.15 8.57 23.73 75 E15a_E16a KnownJunction 0 0.00 19.01 18.33 26.10 4.33 20.16 1.77 16.51 111.14 7.23 0.00 0.00 0.00 4.18 0.00 0.00 0.00 31.26 12.05 39.88 0.00 0.00 0.00 76 I15 Intron 0 12.43 8.13 11.87 15.74 5.02 3.44 4.63 6.76 10.12 5.34 1.93 0.45 2.41 2.19 4.12 4.09 5.36 13.22 7.57 10.11 11.29 5.21 8.08 77 I15_SR1 SilentIntronRegion 0 12.50 8.17 11.93 15.82 5.04 3.46 4.66 6.79 10.17 5.37 1.94 0.45 2.43 2.20 4.14 4.11 5.39 13.28 7.60 10.16 11.35 5.23 8.12 78 E16_Aa NovelBoundary 0 6.30 3.35 21.55 31.66 3.40 4.49 8.44 10.51 18.34 4.75 2.53 12.60 0.00 7.53 4.45 10.94 16.36 14.88 13.93 9.20 8.09 2.94 14.17 79 ER16a ExonRegion 0 33.35 54.36 166.51 72.05 42.57 46.29 37.57 89.27 184.17 66.88 112.15 38.20 18.24 88.89 69.89 45.57 66.09 106.43 113.12 91.96 155.73 61.81 49.40 80 E16_Da NovelBoundary 0 6.00 11.38 21.08 11.25 0.00 0.00 2.25 10.80 18.49 19.15 0.00 0.00 0.00 2.47 12.36 11.88 12.53 18.32 16.75 9.40 5.50 2.33 3.76 81 E16a_E17a KnownJunction 0 59.20 78.60 187.57 93.13 41.34 79.33 43.10 120.51 217.68 88.54 176.36 70.22 49.51 119.61 59.46 81.35 85.65 139.32 175.16 139.72 168.41 95.03 76.31 82 E17_Aa NovelBoundary 0 43.56 3.35 36.75 17.55 3.99 0.00 10.69 12.12 16.03 5.72 0.00 0.00 0.00 6.95 5.56 7.78 14.31 18.28 9.04 9.20 8.90 6.18 7.77 83 ER17a ExonRegion 0 35.57 61.06 81.43 47.65 30.09 27.51 19.69 33.07 71.12 32.29 40.76 14.33 9.69 36.17 33.06 27.55 29.85 45.20 86.89 35.54 67.63 42.37 45.81 84 IG12_AR1 ActiveIntergenicRegion 0 3.53 4.07 3.68 1.36 0.00 1.83 1.32 5.19 7.62 1.15 1.93 0.00 0.00 1.62 0.00 2.97 0.00 0.00 3.19 2.13 0.00 0.00 13.70