Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC010615.2 Gene 0 5.54 5.71 5.47 1.57 11.17 10.79 16.53 11.17 5.56 35.41 0.50 1.84 1.71 1.26 2.48 1.76 1.48 12.17 2.03 8.99 0.97 0.98 2.06 2 502059 Transcript 0 0.78 0.61 0.63 0.00 0.71 2.09 1.99 3.11 0.94 8.24 0.00 0.17 0.00 0.00 0.00 0.44 0.00 4.36 0.54 2.21 0.12 0.09 0.16 3 501360 Transcript 0 2.09 1.06 1.63 0.23 5.60 2.63 7.46 3.63 2.86 14.01 0.00 0.00 0.13 0.03 0.07 0.14 0.19 2.15 0.16 4.23 0.00 0.20 0.07 4 500999 Transcript 0 8.63 6.67 3.25 1.65 7.14 4.54 12.42 3.19 17.38 24.64 1.49 7.55 7.18 4.68 9.83 4.29 5.09 13.57 4.91 15.85 3.05 2.15 5.79 5 IG9 Intergenic 0 11.73 9.47 1.43 6.06 23.08 9.25 50.40 23.37 24.78 42.28 0.04 0.20 0.16 0.07 0.12 0.19 0.32 26.50 7.61 22.60 0.21 0.42 1.68 6 IG9_SR2 SilentIntergenicRegion 0 56.75 31.09 5.00 18.30 77.09 33.45 127.68 106.33 84.52 168.88 0.00 0.72 1.36 0.00 0.46 0.20 1.11 67.08 21.72 58.85 0.59 0.70 3.80 7 IG9_AR3 ActiveIntergenicRegion 0 73.87 54.84 5.91 20.86 153.50 41.66 222.00 150.38 91.08 208.92 0.00 0.48 0.00 0.00 0.00 0.65 0.36 31.48 18.87 55.66 0.00 0.00 1.89 8 IG9_SR3 SilentIntergenicRegion 0 33.31 22.24 4.28 10.97 46.14 24.49 113.35 73.88 66.48 113.66 0.00 0.00 0.00 0.00 0.00 0.00 1.84 75.19 15.06 73.90 0.00 0.30 1.36 9 IG9_AR4 ActiveIntergenicRegion 0 19.11 23.01 2.46 13.73 64.89 28.71 154.86 74.56 79.35 159.70 0.00 1.05 0.43 0.00 0.00 0.00 0.63 33.23 12.07 53.52 0.00 0.45 2.56 10 IG9_SR4 SilentIntergenicRegion 0 20.97 31.52 2.68 23.62 118.18 17.62 205.56 103.32 92.93 197.03 0.00 0.00 0.00 0.36 0.00 0.00 0.00 35.07 10.20 72.50 0.00 1.23 0.54 11 IG9_AR5 ActiveIntergenicRegion 0 29.97 42.36 4.93 17.83 85.25 19.45 143.87 76.65 79.03 157.11 0.00 0.00 0.00 0.31 0.27 0.00 1.78 37.79 10.58 61.99 0.00 1.67 2.36 12 IG9_SR5 SilentIntergenicRegion 0 9.91 7.06 0.95 6.69 40.84 11.13 97.60 38.87 36.40 69.37 0.00 0.00 0.81 0.00 0.36 0.52 1.72 35.09 17.67 49.46 0.00 0.72 2.55 13 IG9_AR6 ActiveIntergenicRegion 0 20.44 21.97 1.63 16.86 43.85 19.08 148.14 57.48 74.04 138.88 0.10 0.00 0.00 0.07 0.00 0.45 1.16 163.72 38.40 110.52 0.44 0.63 3.94 14 IG9_AR7 ActiveIntergenicRegion 0 10.66 6.56 1.89 10.49 19.01 11.13 80.01 12.97 24.24 32.44 0.00 1.71 0.00 0.00 0.00 1.53 0.43 93.81 15.22 37.90 1.14 1.61 6.82 15 IG9_SR7 SilentIntergenicRegion 0 14.99 11.40 0.52 7.70 19.20 7.67 70.64 15.78 21.59 28.39 0.09 0.51 0.59 0.00 0.10 0.14 0.31 21.37 6.96 24.68 0.10 1.28 2.09 16 IG9_AR9 ActiveIntergenicRegion 0 16.27 14.21 1.28 1.42 7.48 11.53 27.75 3.60 6.43 7.16 0.00 0.00 0.00 0.00 1.43 2.08 0.00 27.01 20.03 44.59 0.00 0.00 0.00 17 IG9_SR9 SilentIntergenicRegion 0 9.62 6.57 1.44 5.50 7.11 8.40 9.49 4.72 13.21 4.08 0.24 0.14 0.15 0.22 0.14 0.12 0.13 14.83 4.32 8.48 0.53 1.16 2.29 18 IG9_AR10 ActiveIntergenicRegion 0 13.81 6.25 1.98 6.28 21.99 16.13 66.88 10.70 26.95 15.74 0.16 0.36 0.00 0.00 0.06 0.21 0.00 43.06 11.01 19.12 1.34 0.00 3.73 19 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 1.16 2.42 3.40 1.14 0.00 10.26 0.00 0.00 0.00 0.00 0.00 1.28 0.00 1.08 0.00 3.66 0.95 0.00 0.00 20 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E2_Aa NovelBoundary 0 3.33 0.00 0.00 0.00 0.00 14.31 3.71 3.66 7.87 25.25 0.00 0.00 0.00 0.00 0.00 4.02 0.00 8.29 4.80 6.52 0.00 0.00 0.00 22 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 2.37 2.16 3.30 0.02 7.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.43 0.56 2.76 0.71 0.00 0.95 23 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.80 0.00 0.00 0.00 0.00 24 ER3a ExonRegion 0 0.00 0.71 0.96 0.00 0.93 0.00 1.16 1.35 1.29 11.34 0.00 0.00 0.00 0.23 0.00 0.52 0.58 4.81 0.00 2.60 0.00 0.00 0.00 25 E3_Da NovelBoundary 0 0.00 0.00 3.67 0.00 4.33 4.77 1.77 6.74 9.46 22.00 0.00 0.00 0.00 0.00 0.00 0.00 3.83 8.91 0.00 8.31 0.00 0.00 0.00 26 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 E4_Aa NovelBoundary 0 7.41 8.75 1.45 0.00 0.00 0.00 6.45 12.94 6.45 22.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.51 4.80 20.45 0.00 0.00 0.00 28 ER4a ExonRegion 0 0.89 0.07 0.00 0.00 0.00 1.06 5.30 2.92 3.09 8.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.13 0.81 3.62 0.00 1.18 0.00 29 E4_Da NovelBoundary 0 85.79 93.73 52.98 44.72 91.26 62.12 114.34 46.70 24.33 46.44 31.22 79.08 109.57 85.06 129.43 127.23 40.95 55.80 44.99 71.08 49.61 24.06 113.11 30 E4a_E5a KnownJunction 0 3.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 E5_Aa NovelBoundary 0 5.93 8.42 10.73 9.42 7.56 2.67 14.31 38.86 14.06 54.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66.24 14.40 5.75 0.00 0.00 0.00 32 ER5a ExonRegion 0 0.56 2.03 0.18 0.00 0.33 3.85 2.03 0.00 0.30 4.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.22 0.00 0.00 0.00 33 E5_Da NovelBoundary 0 0.00 0.00 1.39 0.00 7.39 2.21 15.55 19.35 0.00 12.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.32 0.00 15.21 0.00 0.00 0.00 34 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 1.10 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 E6_Aa NovelBoundary 0 0.00 0.00 0.00 1.73 7.30 5.34 12.23 14.17 11.02 51.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.32 0.00 6.39 0.00 0.00 0.00 37 ER6a ExonRegion 0 0.74 3.26 1.54 0.00 6.51 5.92 5.79 10.47 2.57 33.91 0.00 2.31 0.00 0.00 0.00 0.47 0.00 13.07 0.00 4.49 0.00 0.00 0.00 38 E6_Da NovelBoundary 0 0.00 0.00 1.83 3.73 3.57 0.00 6.27 14.25 4.28 21.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 E6a_E7a KnownJunction 0 0.00 3.35 2.78 0.00 0.00 5.45 4.15 13.35 0.00 29.82 0.00 0.00 0.00 0.00 0.00 4.36 0.00 12.85 0.00 7.93 0.00 0.00 0.00 40 ER7a ExonRegion 0 1.02 0.38 5.61 0.00 6.11 7.23 14.08 16.11 10.70 53.28 0.00 0.00 0.00 0.00 0.00 0.79 0.00 18.29 0.00 8.73 0.00 0.00 0.00 41 E7a_E8a KnownJunction 0 0.00 0.00 3.76 0.00 10.61 7.38 5.61 6.61 6.11 43.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.57 0.00 8.95 0.00 0.00 0.00 42 ER8a ExonRegion 0 0.77 2.78 0.38 0.00 8.22 9.76 13.24 11.57 8.28 39.02 0.00 0.00 1.76 0.61 1.09 1.35 0.00 19.48 0.00 14.44 0.00 0.00 0.00 43 E8_Da NovelBoundary 0 0.00 6.58 87.19 95.16 8.32 5.28 12.72 56.31 38.22 66.40 5.16 0.00 6.33 2.30 0.00 17.09 9.44 108.69 18.73 22.24 0.00 9.06 4.35 44 E8a_E9a KnownJunction 0 0.00 0.00 1.18 0.00 0.00 5.79 0.00 3.33 2.69 5.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.75 0.00 2.43 0.00 0.00 0.00 45 E8a_E11a KnownJunction 0 3.04 0.00 0.00 0.00 4.33 0.00 9.36 1.93 7.44 17.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.72 0.00 0.00 0.00 46 ER9a ExonRegion 0 1.21 0.00 3.29 0.00 0.00 2.26 0.02 1.80 3.11 6.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.01 0.00 1.24 0.00 0.00 0.00 47 E9a_E10a KnownJunction 0 2.82 0.00 0.00 0.00 0.00 0.00 0.00 2.26 0.00 2.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 E10_Aa NovelBoundary 0 18.52 19.73 47.25 104.62 8.57 5.68 20.76 77.47 44.10 63.58 2.58 0.00 0.00 0.00 0.00 0.00 18.70 38.63 0.00 41.61 6.24 3.12 21.26 49 ER10a ExonRegion 0 2.02 1.82 0.00 0.00 2.30 4.05 7.11 4.91 1.67 6.87 0.00 0.00 0.00 0.00 0.00 0.00 0.03 8.66 1.43 4.82 0.00 0.02 1.34 50 E10_Da NovelBoundary 0 32.75 75.38 183.67 230.44 20.71 8.40 55.38 126.51 77.43 102.10 5.16 6.90 7.30 0.00 0.00 32.64 22.25 533.63 30.87 127.32 14.70 12.00 58.22 51 E10a_E11a NovelJunction 0 0.00 3.35 1.83 0.00 0.00 0.00 4.11 4.15 3.41 24.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.44 0.00 6.26 0.00 0.00 0.00 52 E10a_E11b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 E11_Aa NovelBoundary 0 23.63 44.86 130.86 120.63 24.19 27.03 127.63 78.41 22.63 63.26 2.32 6.30 0.00 7.95 6.30 8.46 16.64 147.33 33.98 131.09 24.15 13.90 4.10 54 E11_Ab NovelBoundary 0 3.48 24.40 43.52 76.31 28.10 26.12 34.05 40.50 21.15 60.47 0.00 6.30 0.00 0.00 0.00 16.24 9.16 71.09 26.17 54.46 5.25 6.00 11.61 55 ER11a ExonRegion 0 2.12 0.00 1.23 0.00 4.91 2.14 16.11 3.46 7.41 20.26 0.00 0.00 0.78 0.00 0.48 0.00 0.55 5.54 0.53 12.77 0.00 1.04 0.49 56 ER11b ExonRegion 0 4.30 3.21 3.25 1.55 6.21 6.77 20.13 6.61 12.81 37.45 0.00 0.00 1.98 0.70 2.30 0.00 1.67 17.64 3.32 25.03 1.16 2.10 3.03 57 E11a_E12a KnownJunction 0 11.19 0.00 2.90 3.43 20.54 7.67 12.72 12.57 17.13 29.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.85 0.00 8.88 0.00 0.00 0.00 58 ER12a ExonRegion 0 5.15 6.51 5.87 4.94 7.17 14.32 21.17 19.13 18.44 55.82 0.51 0.31 0.34 0.49 0.43 2.60 0.29 37.83 2.51 21.16 1.54 1.83 3.60 59 E12a_E13a KnownJunction 0 10.59 5.92 3.31 1.47 8.23 18.34 9.89 15.36 14.87 51.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43.40 0.00 11.12 0.00 0.00 0.00 60 ER13a ExonRegion 0 7.98 18.47 4.33 1.82 6.80 19.58 22.79 12.76 22.63 52.52 3.28 3.23 0.96 3.49 3.51 7.02 3.22 38.80 7.75 26.04 2.22 3.82 6.28 61 E13_Ab KnownBoundary 0 33.93 96.23 123.03 150.86 26.66 73.59 91.68 110.94 69.99 112.82 2.42 0.00 0.00 2.30 6.06 31.53 34.60 294.98 65.23 104.19 11.74 8.51 52.84 62 ER13b ExonRegion 0 7.04 20.69 3.09 2.19 15.36 33.85 27.00 14.28 14.85 38.22 1.01 0.19 0.82 3.71 3.60 4.33 6.67 25.35 7.34 27.94 1.77 2.40 6.64 63 E13_Da NovelBoundary 0 2.74 0.00 1.69 0.00 0.00 4.66 12.23 0.00 2.31 15.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.24 0.00 6.52 0.00 0.00 0.00 64 E13a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.84 5.65 4.15 0.00 9.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.00 0.00 0.00 0.00 0.00 0.00 65 E13a_E16a KnownJunction 0 6.96 2.70 1.83 0.00 3.74 2.90 6.89 1.97 29.28 33.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.99 0.00 15.21 0.00 0.00 0.00 66 E14_Aa NovelBoundary 0 0.00 9.67 71.38 87.80 12.99 2.78 35.07 103.88 16.61 77.20 0.00 0.00 0.00 0.00 0.00 0.00 4.58 74.70 0.00 28.06 3.03 3.00 0.00 67 ER14a ExonRegion 0 0.00 1.73 0.86 0.85 0.16 1.13 3.19 3.23 0.00 6.49 0.86 0.00 0.00 0.00 0.00 0.00 0.00 5.75 0.00 1.01 0.00 0.00 0.00 68 E14_Da NovelBoundary 0 0.00 0.00 0.00 1.53 7.64 2.84 11.79 8.63 0.00 16.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 5.56 0.00 0.00 0.00 69 E14a_E15a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.85 3.98 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70 E14a_E16a NovelJunction 0 0.00 0.00 1.21 0.00 0.00 0.00 12.59 5.05 0.00 15.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.62 0.00 0.00 0.00 71 E15_Aa NovelBoundary 0 0.00 0.00 16.47 20.64 3.40 0.00 3.27 7.64 15.97 27.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48.75 0.00 8.56 0.00 0.00 0.00 72 ER15a ExonRegion 0 1.52 0.00 0.00 0.00 3.81 2.09 4.72 3.16 0.00 9.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.25 0.00 0.00 0.00 0.00 0.00 73 E15a_E16a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 6.98 0.00 4.60 0.00 3.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74 E16_Aa NovelBoundary 0 3.48 0.00 2.90 0.00 20.29 0.00 5.61 12.77 3.59 8.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.47 0.00 5.94 0.00 2.88 0.00 75 ER16a ExonRegion 0 5.37 7.12 5.23 0.69 11.25 15.06 14.04 11.58 13.55 45.76 0.00 0.00 0.00 0.90 0.00 3.01 0.00 22.65 1.08 10.40 0.00 0.80 0.99 76 E16_Da KnownBoundary 0 3.48 5.85 3.67 0.00 8.57 8.18 23.32 9.08 6.16 37.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.22 0.00 3.26 0.00 2.33 0.00 77 E16a_E17a KnownJunction 0 0.00 0.00 0.00 0.00 7.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 78 ER16b ExonRegion 0 3.28 4.53 6.61 0.76 11.36 10.81 17.35 7.14 1.83 37.44 0.10 0.42 0.21 0.24 1.09 0.22 0.71 10.94 0.86 6.19 0.20 0.10 0.63 79 E16_Db KnownBoundary 0 347.84 376.31 136.96 138.98 347.88 271.38 530.39 180.73 150.78 182.23 117.66 73.67 125.32 70.99 95.19 282.75 275.55 241.42 287.07 414.95 193.55 96.57 266.76 80 ER16c ExonRegion 0 10.29 10.64 4.66 3.30 10.54 6.19 17.96 4.41 5.47 15.81 2.99 15.11 14.36 9.35 19.66 8.57 10.18 8.16 9.83 16.49 6.11 4.30 11.58 81 E16_Dc NovelBoundary 0 0.00 0.00 5.41 0.00 0.00 2.27 10.55 3.57 2.86 15.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.86 0.00 0.00 0.00 0.00 82 E17_Aa NovelBoundary 0 9.48 60.45 49.29 52.64 96.52 39.35 104.58 84.33 15.51 119.19 0.00 0.00 6.66 0.00 0.00 0.00 0.00 24.25 0.00 23.97 0.00 0.00 0.00 83 ER17a ExonRegion 0 9.46 6.74 9.25 1.59 21.12 16.28 23.35 18.69 2.76 47.72 0.00 0.00 0.10 0.00 0.00 0.46 0.21 4.71 0.60 4.53 0.00 0.39 0.00