Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC092296.5 Gene 0 22.18 61.17 46.56 36.57 41.12 37.01 27.64 50.69 32.15 68.13 1.20 5.67 6.64 9.20 8.63 11.42 3.72 67.43 116.96 109.83 12.66 5.98 11.63 2 438368 Transcript 0 6.50 17.07 29.08 14.66 10.13 8.60 11.50 20.55 14.13 35.96 0.00 1.81 1.65 4.58 4.63 5.79 1.44 44.61 71.89 71.99 8.29 5.05 4.62 3 449434 Transcript 0 4.89 30.06 9.89 11.15 14.37 16.12 17.99 15.28 10.34 19.35 0.99 2.55 5.67 0.71 3.34 6.87 4.56 16.61 29.69 29.15 6.92 6.42 7.55 4 412740 Transcript 0 4.15 66.81 10.80 25.41 64.63 44.75 16.58 48.02 31.62 34.71 0.29 1.08 0.00 2.97 1.80 2.24 0.00 26.46 41.62 61.44 2.99 1.89 1.77 5 427868 Transcript 0 25.13 39.56 24.36 19.96 35.80 18.95 17.83 34.68 15.19 49.59 0.00 0.53 1.15 3.86 1.91 1.31 0.00 25.58 55.16 40.65 2.64 2.17 5.08 6 IG21 Intergenic 0 18.18 44.08 12.71 21.99 37.40 23.30 18.20 27.03 16.84 23.06 1.13 2.06 0.65 0.57 1.18 2.19 0.42 4.11 5.75 10.92 0.56 2.54 2.01 7 IG21_SR2 SilentIntergenicRegion 0 35.40 98.71 23.19 41.32 72.89 47.33 34.98 49.06 28.27 38.39 1.85 5.04 1.17 1.16 1.56 4.26 1.13 8.21 8.48 17.28 0.60 5.41 3.21 8 IG21_AR2 ActiveIntergenicRegion 0 22.20 33.57 18.05 29.20 47.63 25.28 23.62 39.85 28.44 40.76 2.12 0.87 1.04 0.32 2.85 2.54 0.00 4.04 7.17 17.91 1.34 2.54 3.22 9 ER1a ExonRegion 0 20.82 30.22 82.07 38.76 17.76 19.15 17.68 50.15 29.56 85.72 0.00 1.43 2.33 15.26 9.22 18.50 0.66 133.46 270.51 216.17 21.66 7.53 14.74 10 E1_Da NovelBoundary 0 0.00 3.22 8.84 19.48 3.99 2.44 5.96 4.48 12.36 8.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.80 4.61 31.32 0.00 6.18 7.77 11 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E1a_E2e NovelJunction 0 0.00 0.00 15.91 17.41 0.00 0.00 0.00 14.66 22.68 14.59 0.00 0.00 0.00 0.00 0.00 4.19 0.00 21.60 4.80 3.20 0.00 3.00 0.00 13 I1 Intron 0 7.23 51.99 21.88 13.06 30.14 22.44 21.07 20.77 21.86 29.92 1.13 1.49 3.98 2.30 2.66 3.35 1.33 19.59 29.96 64.51 4.16 1.89 4.05 14 I1_SR3 SilentIntronRegion 0 1.16 15.57 7.34 2.96 8.34 6.70 5.57 6.13 4.72 10.32 0.00 0.00 0.71 0.25 1.18 2.18 0.00 4.85 16.92 40.07 1.20 0.00 1.62 15 I1_AR4 ActiveIntronRegion 0 9.13 78.61 21.98 12.38 37.86 21.20 23.67 18.03 20.54 30.30 0.84 0.47 4.73 2.78 3.24 2.85 1.44 9.37 17.00 64.93 3.01 2.26 2.09 16 I1_SR4 SilentIntronRegion 0 8.43 48.35 27.98 17.82 33.84 30.00 25.77 28.94 30.07 37.96 1.82 2.84 4.83 2.82 2.87 4.20 1.81 33.15 44.78 74.56 6.24 2.43 6.49 17 E2_Aa NovelBoundary 0 43.42 101.56 36.72 70.02 47.54 73.65 101.44 55.94 56.13 60.28 22.16 24.31 0.00 14.60 8.65 46.31 25.25 38.68 60.05 79.32 28.73 20.76 46.61 18 ER2a ExonRegion 0 4.37 13.33 8.55 4.79 12.37 8.27 22.04 15.52 9.47 15.42 0.00 5.58 3.13 3.32 11.93 6.54 6.53 22.17 9.70 47.09 5.48 7.45 5.42 19 E2_Ab KnownBoundary 0 24.37 35.39 99.46 71.59 21.48 20.61 59.31 103.22 87.04 105.81 9.74 13.95 12.66 2.35 30.78 43.41 27.49 163.53 36.52 76.64 20.20 19.35 11.78 20 ER2b ExonRegion 0 32.87 57.33 25.62 21.89 32.88 35.26 48.16 33.37 30.48 37.51 11.77 39.72 38.17 31.72 35.14 32.49 30.57 44.04 46.04 94.36 21.90 9.10 39.43 21 E2_Ac KnownBoundary 0 132.02 126.95 167.44 190.85 179.37 80.47 146.75 228.95 213.13 185.72 47.17 7.20 0.00 5.18 24.23 95.45 98.74 276.95 139.86 130.65 82.29 32.88 71.71 22 E2_Ad KnownBoundary 0 74.68 82.62 161.59 129.95 104.92 37.48 81.66 132.46 141.23 144.71 33.11 12.90 14.28 13.66 25.47 54.52 20.94 154.04 62.59 83.35 17.73 17.39 49.08 23 ER2c ExonRegion 0 9.88 30.23 29.25 15.08 52.09 29.34 28.95 32.26 21.41 20.64 1.80 1.15 28.14 11.48 13.73 11.49 3.30 17.98 55.21 58.87 11.90 1.81 17.23 24 ER2d ExonRegion 0 20.77 42.02 57.16 29.20 34.92 41.76 23.29 40.94 30.69 49.07 0.00 8.98 11.49 4.18 8.59 7.32 0.21 40.49 57.66 80.53 3.53 7.32 4.59 25 E2_Da KnownBoundary 0 9.71 18.62 13.07 2.96 3.40 6.64 32.99 13.60 6.34 14.88 1.95 0.00 6.01 0.00 0.00 0.00 0.00 18.82 4.24 12.34 5.68 0.00 3.16 26 E2a_E2e KnownJunction 0 3.78 49.00 56.62 18.08 40.49 45.94 19.12 38.90 12.99 32.13 0.00 0.00 0.00 0.00 0.00 4.36 0.00 31.42 53.65 58.87 5.00 2.51 3.50 27 ER2e ExonRegion 0 4.89 30.06 9.89 11.15 14.37 16.12 17.99 15.28 10.34 19.35 0.99 2.55 5.67 0.71 3.34 6.87 4.56 16.61 29.69 29.15 6.92 6.42 7.55 28 E2_Ae KnownBoundary 0 3.33 41.31 15.97 21.61 24.19 4.88 12.98 18.44 27.49 27.83 2.53 0.00 6.66 0.00 0.00 11.62 9.07 28.69 26.64 39.69 8.03 0.00 15.96 29 ER2f ExonRegion 0 34.84 80.96 78.66 46.01 44.76 37.02 45.44 72.78 45.87 105.92 0.00 3.04 2.66 4.08 7.84 19.84 6.33 79.50 129.83 115.58 21.56 0.56 13.02 30 E2_Db NovelBoundary 0 0.00 3.29 15.26 7.89 7.64 12.04 3.80 9.94 23.26 12.14 2.58 0.00 0.00 0.00 0.00 3.67 0.00 10.69 12.05 6.07 0.00 3.12 0.00 31 E2b_E3a KnownJunction 0 59.05 84.26 147.04 96.76 48.05 53.89 72.74 120.35 100.78 218.15 0.00 6.30 0.00 5.18 14.34 31.36 0.00 140.53 209.79 169.00 31.01 2.69 15.71 32 ER3a ExonRegion 0 48.60 79.94 92.24 62.37 45.93 54.75 48.43 70.14 49.38 144.26 0.00 1.89 3.24 6.53 10.66 14.64 2.76 128.10 211.68 131.18 31.69 11.10 10.95 33 E3_Db NovelBoundary 0 3.41 6.31 8.28 1.30 4.07 18.00 2.08 5.96 2.58 6.50 2.53 0.00 0.00 0.00 0.00 0.00 0.00 15.38 4.42 26.14 5.81 0.00 0.00 34 E3b_E4a KnownJunction 0 3.04 17.37 34.71 16.55 7.81 0.00 8.70 20.33 16.64 41.42 0.00 0.00 0.00 2.47 0.00 0.00 0.00 41.12 52.99 52.60 7.97 8.39 0.00 35 E3b_E5a KnownJunction 0 29.78 24.34 35.21 49.61 42.61 45.77 43.50 53.07 24.16 86.52 0.00 0.00 0.00 4.94 5.56 3.85 0.00 90.00 249.61 63.92 11.18 8.70 12.63 36 ER3b ExonRegion 0 24.69 49.48 78.42 68.14 38.35 61.74 41.04 78.93 47.35 157.51 0.00 4.33 0.00 12.45 4.84 6.93 0.00 137.97 265.45 139.72 19.10 15.97 14.68 37 I3 Intron 0 5.78 24.49 15.71 6.99 16.79 13.36 15.94 20.59 18.62 17.81 0.98 4.33 2.23 2.42 1.04 5.71 2.00 8.19 11.93 21.53 2.45 3.58 3.86 38 I3_AR1 ActiveIntronRegion 0 4.23 21.72 20.88 7.32 12.70 12.95 11.03 22.59 21.07 18.35 0.50 4.41 2.14 1.32 0.00 2.25 1.88 7.70 14.64 22.57 3.08 2.59 1.67 39 I3_SR1 SilentIntronRegion 0 7.60 27.78 9.84 6.63 21.55 13.89 21.65 18.38 15.89 17.28 1.53 4.26 2.35 3.69 2.23 9.72 2.16 8.78 8.86 20.41 1.74 4.74 6.40 40 E4_Aa NovelBoundary 0 197.00 142.47 66.70 125.36 221.65 81.15 144.50 88.84 83.25 61.27 20.90 30.61 50.32 6.53 9.64 69.98 41.89 70.64 79.72 53.95 26.01 14.33 41.57 41 ER4a ExonRegion 0 4.29 24.43 20.06 13.23 12.69 15.59 9.10 16.77 14.98 37.25 0.00 2.03 2.80 1.85 2.01 3.89 0.00 26.29 26.28 44.08 6.34 1.88 2.92 42 E4_Da NovelBoundary 0 1113.90 910.69 630.52 775.89 1082.34 513.80 1354.78 883.54 792.47 765.16 423.32 282.39 892.64 574.14 347.12 760.83 879.29 936.43 783.93 941.05 613.14 439.35 938.57 43 I4 Intron 0 48.09 112.44 64.67 49.05 77.73 65.14 44.60 60.04 47.48 64.52 7.98 12.12 27.88 13.59 14.36 15.29 12.46 45.28 77.46 93.76 16.41 10.86 14.67 44 I4_AR1 ActiveIntronRegion 0 24.20 94.50 95.11 51.87 58.45 38.47 23.16 51.96 39.73 69.27 9.03 5.57 13.99 6.04 12.52 12.37 6.87 52.55 114.29 79.26 19.44 6.84 8.64 45 I4_SR1 SilentIntronRegion 0 58.76 115.07 65.68 50.39 91.76 74.73 54.15 62.76 55.11 62.78 8.41 15.96 36.65 16.98 15.61 17.18 15.84 43.78 68.27 99.55 15.89 13.72 17.17 46 I4_AR2 ActiveIntronRegion 0 76.97 159.48 52.11 91.74 51.68 66.11 54.49 148.19 75.41 149.82 16.68 12.76 22.46 10.34 10.54 30.50 19.28 74.98 76.11 104.14 34.22 9.10 15.46 47 I4_AR3 ActiveIntronRegion 0 45.92 60.74 20.03 86.57 22.69 45.61 25.85 146.77 51.50 137.98 2.44 9.79 11.01 6.28 9.21 13.57 5.17 76.64 69.52 83.35 22.32 1.63 5.75 48 I4_AR4 ActiveIntronRegion 0 27.04 134.44 9.52 24.34 43.62 62.50 30.67 34.29 12.59 43.24 3.22 2.12 5.61 9.47 11.89 7.96 3.30 31.85 63.73 87.89 10.64 3.27 12.73 49 E5_Aa NovelBoundary 0 137.95 453.60 213.98 161.92 133.53 161.78 98.00 142.61 108.51 171.62 12.37 6.30 0.00 5.24 22.13 12.30 33.01 138.21 98.83 177.11 42.44 13.90 28.68 50 ER5a ExonRegion 0 30.88 165.45 78.89 100.05 88.86 89.39 45.73 139.81 66.65 142.56 0.00 1.60 5.18 9.67 6.39 12.80 0.00 106.00 219.20 133.33 14.98 8.43 19.29 51 E5_Da NovelBoundary 0 27.26 199.37 155.29 170.41 103.82 79.67 32.68 168.77 78.56 174.76 0.00 0.00 0.00 7.18 12.49 11.54 4.77 124.03 108.05 195.01 21.37 12.49 3.24 52 E5a_E6a KnownJunction 0 0.00 29.47 0.00 7.69 44.74 23.17 0.00 28.34 18.55 9.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 9.32 14.57 0.00 0.00 0.00 53 E5a_E7a KnownJunction 0 3.78 15.52 7.72 6.53 16.13 5.45 9.32 26.90 1.45 28.69 0.00 0.00 0.00 2.47 0.00 0.00 0.00 2.53 40.10 0.00 0.00 0.00 4.35 54 I5 Intron 0 38.59 189.25 89.34 99.21 87.36 78.88 54.90 99.30 62.60 110.99 2.76 3.58 6.44 10.22 12.97 6.02 4.72 55.07 74.77 170.37 9.19 5.21 5.95 55 I5_AR1 ActiveIntronRegion 0 38.77 190.09 89.72 99.64 87.75 79.25 55.16 99.75 62.88 111.50 2.78 3.60 6.47 10.27 13.04 6.05 4.74 55.31 75.11 171.15 9.23 5.24 5.98 56 E6_Aa NovelBoundary 0 18.00 222.13 55.70 149.00 201.87 133.50 89.87 121.58 78.15 138.96 0.00 0.00 0.00 7.24 10.75 8.54 0.00 60.65 85.37 226.08 2.72 8.45 7.51 57 ER6a ExonRegion 0 8.30 104.16 21.59 43.12 84.52 66.33 33.16 67.71 44.70 59.89 0.58 2.15 0.00 5.94 3.61 4.48 0.00 50.73 73.92 108.31 5.99 3.77 3.54 58 E6_Da NovelBoundary 0 38.08 155.50 47.22 57.40 34.97 78.53 27.29 122.11 69.10 133.32 0.00 0.00 0.00 7.42 9.39 3.85 20.38 49.74 53.37 126.43 25.33 8.14 3.41 59 I6 Intron 0 30.32 77.00 30.37 34.12 41.53 32.99 27.33 41.96 28.88 65.15 0.16 0.91 4.28 4.32 5.59 2.79 0.00 56.33 59.77 100.54 6.39 1.95 4.26 60 I6_AR1 ActiveIntronRegion 0 34.41 87.37 34.46 38.72 47.13 37.44 31.01 47.60 32.77 73.93 0.19 1.04 4.86 4.90 6.34 3.16 0.00 63.92 67.82 114.08 7.25 2.22 4.83 61 E7_Aa NovelBoundary 0 38.75 121.62 12.60 40.49 67.66 65.53 67.22 24.85 27.34 31.37 0.00 0.00 0.00 6.95 4.45 4.36 0.00 9.04 13.55 71.59 2.53 0.00 4.35 62 ER7a ExonRegion 0 46.49 63.59 41.01 33.39 55.47 32.45 26.33 42.45 28.94 70.50 0.00 1.06 2.30 5.25 3.82 2.62 0.00 48.64 70.23 81.30 5.28 4.35 5.80