Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF568 Gene 0 15.06 36.54 16.18 33.73 25.75 25.29 22.61 22.40 24.75 31.71 4.94 8.82 9.96 6.44 5.59 6.75 6.26 26.08 21.21 30.43 9.65 12.11 11.10 2 427117 Transcript 0 5.50 11.73 8.23 17.03 12.89 12.08 9.73 18.40 16.58 20.87 1.67 3.32 3.57 5.53 3.08 8.27 3.85 25.15 20.63 16.72 9.24 4.43 6.23 3 333987 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 415168 Transcript 0 12.01 31.20 10.99 19.39 16.14 11.30 12.43 9.75 9.44 12.74 1.82 5.32 7.75 2.48 4.12 2.13 6.11 2.90 6.26 14.02 1.19 8.01 2.46 5 444991 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 354259 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 455427 Transcript 0 8.84 42.39 12.80 23.15 21.12 37.02 44.34 19.18 22.95 28.33 0.62 0.00 1.50 2.59 0.04 0.95 0.69 46.64 43.39 42.74 7.01 2.70 15.59 8 433993 Transcript 0 0.33 1.97 2.22 7.35 1.26 4.33 0.56 5.49 7.52 7.65 0.00 0.00 0.00 4.94 0.00 1.75 1.04 50.15 38.17 16.78 2.78 1.31 8.54 9 455817 Transcript 0 0.00 0.00 0.00 1.70 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.08 4.14 6.20 0.00 0.00 0.00 10 ER1a ExonRegion 0 0.98 0.00 0.38 1.36 4.32 4.66 1.63 0.00 1.24 0.88 0.00 0.00 0.00 0.00 0.00 6.86 0.00 0.00 1.23 0.00 1.19 0.00 0.45 11 E1_Ad KnownBoundary 0 34.08 24.34 1.69 4.13 34.72 68.20 41.34 11.09 9.06 13.67 6.53 0.00 0.00 9.48 8.90 23.24 4.58 16.21 4.80 24.29 17.61 2.63 27.66 12 ER1b ExonRegion 0 4.23 1.02 1.23 1.36 5.35 17.42 4.63 0.86 1.24 1.15 0.00 0.00 0.00 0.00 0.00 8.92 0.00 0.00 3.19 3.19 2.20 0.00 2.94 13 ER1c ExonRegion 0 20.76 14.62 2.28 3.05 14.40 35.45 21.44 6.58 4.00 6.01 2.12 0.00 0.00 4.18 2.62 12.31 4.24 9.85 3.64 13.68 13.01 1.39 17.90 14 ER1d ExonRegion 0 19.65 12.89 6.62 15.41 9.27 17.84 18.40 12.48 16.56 29.92 6.21 1.99 0.00 9.46 2.68 14.10 12.77 24.85 10.72 21.66 31.57 6.61 15.08 15 E1_Ae KnownBoundary 0 3.78 12.23 14.55 21.28 11.46 7.61 13.96 17.13 30.44 47.71 11.53 0.00 0.00 22.78 8.90 34.18 16.36 36.56 38.40 46.98 26.32 18.19 27.32 16 ER1e ExonRegion 0 3.37 5.73 7.35 24.13 13.01 11.29 19.32 22.63 28.55 42.41 14.01 0.00 0.00 14.21 5.87 22.36 8.48 48.71 30.77 54.40 15.93 23.34 24.09 17 E1a_E2a KnownJunction 0 6.52 5.92 5.44 39.69 33.45 22.32 25.84 40.29 31.19 49.43 25.53 0.00 7.30 7.06 14.34 33.15 4.68 66.82 40.75 76.00 14.15 25.11 24.24 18 ER2a ExonRegion 0 5.29 8.66 8.23 27.69 35.28 26.07 16.93 20.17 25.11 42.93 16.71 5.69 4.96 5.75 4.68 17.41 9.24 44.19 16.88 40.43 18.98 15.92 16.15 19 E2a_E3a KnownJunction 0 11.34 15.13 8.66 20.51 48.22 42.76 16.78 10.80 12.67 43.03 10.58 12.60 29.54 0.00 0.00 7.86 4.58 13.27 4.80 26.72 11.92 14.21 19.04 20 E2a_E4a NovelJunction 0 0.00 3.22 0.00 16.75 17.32 33.45 2.21 0.00 7.73 6.12 2.42 0.00 0.00 4.94 0.00 0.00 4.30 2.28 0.00 12.91 6.05 6.12 8.02 21 E2a_E5a KnownJunction 0 0.00 6.05 1.83 0.00 0.00 0.00 5.83 2.01 3.18 2.34 0.00 0.00 0.00 0.00 0.00 0.00 9.07 1.74 4.61 15.40 0.00 3.12 0.00 22 ER3a ExonRegion 0 14.06 22.53 13.62 25.35 19.27 31.42 17.05 19.03 21.08 49.96 17.62 9.21 10.33 14.86 6.59 6.47 14.77 37.66 27.59 42.76 35.93 18.55 16.89 23 E3a_E4a KnownJunction 0 14.15 34.01 23.21 26.70 41.09 10.16 3.71 20.95 25.20 65.46 19.11 6.30 6.82 16.25 0.00 8.72 12.72 43.65 22.40 54.52 29.28 20.21 15.71 24 ER4a ExonRegion 0 9.47 23.64 17.82 24.39 16.83 25.33 27.00 25.81 32.72 53.50 18.90 8.29 9.54 13.98 2.21 9.92 21.76 33.95 37.41 39.70 37.05 15.61 34.29 25 E4a_E5a KnownJunction 0 6.96 32.03 12.86 28.93 8.49 46.68 36.66 43.74 42.71 44.70 15.79 18.91 8.28 13.24 4.45 15.81 17.86 27.48 40.28 38.67 35.71 24.49 20.49 26 ER5a ExonRegion 0 14.87 20.24 23.72 44.89 25.68 26.47 24.19 32.46 44.28 56.79 17.67 18.34 12.63 16.61 4.96 21.20 15.49 51.78 23.40 50.01 39.13 13.24 26.01 27 E5a_E6a KnownJunction 0 23.49 29.27 26.85 47.78 29.37 24.08 17.84 37.13 53.79 65.06 18.32 18.16 0.00 16.01 4.45 22.64 25.71 42.90 13.27 49.34 37.44 8.76 29.96 28 ER6a ExonRegion 0 26.28 36.37 15.62 38.98 26.62 41.36 29.58 23.30 42.68 58.12 15.34 27.28 18.52 13.15 7.37 18.76 13.34 39.36 29.50 39.65 48.73 27.37 21.96 29 E6_Da NovelBoundary 0 7.56 9.27 5.29 9.36 0.00 5.17 8.48 0.00 4.54 4.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.78 8.28 20.71 0.00 0.00 3.67 30 E6a_E7a KnownJunction 0 23.26 34.47 8.54 18.01 4.33 44.12 9.58 13.18 13.45 27.88 11.79 31.51 15.10 11.54 15.20 14.36 4.30 8.29 0.00 24.93 24.46 7.84 12.72 31 E6a_E9a KnownJunction 0 12.30 12.63 2.87 18.48 20.63 7.95 11.66 7.23 10.30 29.84 5.16 0.00 0.00 2.47 0.00 4.36 0.00 12.44 17.60 19.43 17.24 13.84 24.76 32 ER7a ExonRegion 0 19.69 28.32 10.05 31.60 26.87 37.10 28.64 24.63 29.24 37.11 8.78 16.32 23.10 6.64 7.86 8.21 10.71 8.39 9.91 23.99 6.03 18.82 9.50 33 E7_Da KnownBoundary 0 0.00 35.13 11.56 43.62 22.75 21.29 42.40 35.12 33.94 35.27 2.63 5.85 20.45 4.94 4.45 0.00 3.74 0.00 4.80 49.15 6.05 11.63 10.33 34 ER7b ExonRegion 0 9.64 22.23 12.85 39.53 27.41 22.15 25.09 25.37 21.66 22.82 4.22 16.53 10.44 4.63 6.58 4.95 10.33 9.24 10.37 23.40 7.51 12.74 8.24 35 ER7c ExonRegion 0 5.88 26.89 7.62 28.77 24.38 18.13 13.98 22.85 22.64 24.98 0.00 6.25 0.00 5.77 0.00 2.97 6.60 8.62 9.91 9.69 4.41 5.09 5.87 36 ER7d ExonRegion 0 8.06 32.73 10.77 31.16 19.14 25.88 17.08 15.79 21.34 15.90 5.47 10.93 11.03 3.83 3.18 4.83 5.72 6.99 9.94 15.89 2.59 13.95 5.19 37 E7_Dc KnownBoundary 0 17.56 75.78 18.33 56.44 18.85 36.17 20.54 13.02 12.64 17.16 7.11 6.30 6.82 7.00 10.01 4.36 0.00 6.92 4.61 9.46 0.00 14.21 3.50 38 ER7e ExonRegion 0 24.02 56.35 20.15 38.78 32.27 22.60 19.03 17.49 15.70 23.14 3.65 10.63 15.49 4.95 8.23 4.26 3.15 4.06 7.90 12.63 2.38 12.89 4.92 39 E7_Dd NovelBoundary 0 3.78 38.48 34.21 48.94 14.77 18.51 14.53 16.96 10.30 17.35 0.00 7.65 6.82 0.00 4.45 0.00 0.00 1.87 4.52 17.83 0.00 14.45 0.00 40 I7_AR1 ActiveIntronRegion 0 5.23 15.78 16.11 18.71 11.32 10.36 6.56 8.18 8.44 9.71 0.34 2.65 5.06 0.20 0.36 1.57 0.00 1.14 2.30 7.97 1.17 6.99 0.00 41 E8_Aa NovelBoundary 0 3.78 9.60 3.64 4.93 0.00 24.13 6.76 7.97 3.01 11.12 0.00 0.00 0.00 4.77 0.00 0.00 0.00 34.32 44.90 18.15 0.00 0.00 12.89 42 ER8a ExonRegion 0 0.33 1.97 2.22 7.35 1.26 4.33 0.56 5.49 7.52 7.65 0.00 0.00 0.00 4.94 0.00 1.75 1.04 50.15 38.17 16.78 2.78 1.31 8.54 43 E8_Ab KnownBoundary 0 0.00 2.50 1.54 0.00 4.33 2.56 3.62 7.39 4.54 7.87 0.00 0.00 0.00 0.00 0.00 3.85 0.00 17.04 0.00 12.14 0.00 0.00 4.10 44 ER8b ExonRegion 0 6.35 20.18 9.84 13.33 8.89 26.24 14.21 19.99 12.90 16.37 0.00 0.00 0.00 4.66 3.13 0.18 0.00 55.86 30.25 24.84 4.58 3.03 7.02 45 E8a_E9a KnownJunction 0 7.04 11.18 11.62 19.98 0.00 11.19 0.00 14.66 13.98 19.56 0.00 0.00 0.00 2.71 0.00 0.00 0.00 49.29 23.81 25.44 5.93 6.25 4.35 46 ER9a ExonRegion 0 14.64 30.03 14.18 29.64 11.27 18.30 12.82 18.50 24.05 44.70 4.24 0.28 0.60 9.36 5.62 1.64 0.00 82.13 83.97 48.17 20.96 13.43 18.43 47 E9a_E10a KnownJunction 0 0.00 3.16 1.39 9.16 4.07 8.57 0.00 15.85 12.99 19.39 0.00 0.00 0.00 7.36 0.00 0.00 0.00 38.30 31.25 5.94 12.48 0.00 0.00 48 E9a_E11a KnownJunction 0 0.00 17.50 17.15 13.02 3.82 9.65 9.94 6.90 16.17 15.45 5.37 0.00 0.00 7.24 0.00 0.00 0.00 40.71 61.84 19.75 2.29 8.14 4.35 49 E9a_E12a KnownJunction 0 0.00 0.00 0.00 1.70 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.08 4.14 6.20 0.00 0.00 0.00 50 I9_SR2 SilentIntronRegion 0 3.32 12.77 3.48 12.38 7.00 4.46 6.68 10.23 11.56 15.57 0.48 0.44 0.58 0.88 1.33 0.37 0.30 8.26 7.26 12.38 1.35 0.77 3.62 51 E10_Aa NovelBoundary 0 112.54 127.61 110.52 132.22 122.07 149.97 188.57 174.36 149.94 128.70 28.90 35.41 86.52 15.60 30.53 116.55 102.85 90.12 67.58 127.51 42.32 61.66 68.97 52 ER10a ExonRegion 0 15.52 32.04 22.93 40.56 30.27 23.01 27.56 39.35 35.51 42.35 5.01 9.96 10.71 9.23 9.23 17.94 11.55 37.16 29.41 44.22 14.05 13.28 18.23 53 E10_Da NovelBoundary 0 3.41 37.16 12.71 26.04 29.03 21.69 5.92 29.29 12.33 25.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 4.24 8.88 0.00 0.00 0.00 54 E11_Aa NovelBoundary 0 3.19 6.05 1.83 10.52 0.00 4.77 4.50 11.50 17.27 8.19 0.00 0.00 0.00 0.00 6.30 0.00 4.39 15.63 0.00 9.65 0.00 0.00 0.00 55 ER11a ExonRegion 0 8.43 40.13 20.88 15.70 37.72 30.48 41.46 5.88 9.79 23.04 1.64 1.40 0.00 5.66 0.84 1.22 0.00 27.81 23.15 31.57 8.18 8.64 10.73 56 E11_Da NovelBoundary 0 13.26 21.71 1.77 15.05 12.22 14.03 7.86 4.64 10.62 11.79 0.00 0.00 0.00 0.00 4.45 0.00 0.00 21.10 9.60 23.91 2.66 2.94 0.00 57 E11a_E12a KnownJunction 0 6.82 20.92 24.63 7.42 32.94 19.08 38.29 0.00 8.10 25.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.18 24.00 26.91 0.00 5.39 3.93 58 E12_Aa NovelBoundary 0 0.00 11.45 0.00 19.01 3.31 0.00 6.23 12.24 8.68 4.70 0.00 0.00 0.00 4.24 0.00 0.00 0.00 4.35 0.00 9.27 2.47 3.12 8.54 59 ER12a ExonRegion 0 12.04 32.86 27.14 21.30 30.05 30.64 23.87 12.19 21.34 27.84 1.09 2.98 2.05 5.09 0.00 1.58 2.65 52.74 26.98 37.12 4.11 13.89 17.01 60 E12a_E13a KnownJunction 0 20.52 34.66 27.23 35.93 24.79 15.50 29.15 17.79 34.90 35.89 0.00 0.00 0.00 5.12 0.00 0.00 4.77 75.11 18.07 61.23 11.43 5.94 16.05 61 ER13a ExonRegion 0 16.71 50.68 35.72 40.94 35.75 32.55 31.57 25.29 41.94 39.98 2.11 4.67 0.98 5.52 1.87 0.75 2.68 72.52 36.79 54.84 11.02 12.19 14.39 62 E13_Da KnownBoundary 0 7.04 25.52 42.70 36.66 32.68 26.06 23.94 27.36 30.15 43.27 5.05 0.00 0.00 0.00 0.00 0.00 4.21 44.15 16.75 62.77 16.31 4.78 4.35 63 ER13b ExonRegion 0 7.09 50.27 12.90 44.49 25.02 22.40 23.46 25.95 35.38 38.37 0.17 2.28 0.67 3.76 1.79 1.27 0.53 33.15 29.15 49.86 5.23 8.12 9.85 64 E13_Db KnownBoundary 0 10.45 41.57 33.32 50.24 54.84 4.54 37.36 21.85 42.51 39.06 2.68 0.00 0.00 4.83 6.30 0.00 0.00 53.81 48.19 46.34 5.99 9.06 12.38 65 ER13c ExonRegion 0 12.26 46.93 24.87 37.22 28.30 30.02 22.42 22.66 33.06 45.22 0.67 0.89 0.00 4.98 1.12 0.00 0.29 63.49 57.45 62.18 10.07 4.07 15.93 66 E13_Dc KnownBoundary 0 20.08 48.41 11.59 31.86 22.41 52.98 27.03 41.69 29.69 39.22 0.00 0.00 0.00 0.00 0.00 0.00 4.58 42.53 89.41 69.80 10.93 2.27 25.10 67 ER13d ExonRegion 0 8.84 42.39 12.80 23.15 21.12 37.02 44.34 19.18 22.95 28.33 0.62 0.00 1.50 2.59 0.04 0.95 0.69 46.64 43.39 42.74 7.01 2.70 15.59 68 IG33_AR1 ActiveIntergenicRegion 0 11.18 43.74 11.70 27.34 10.49 18.18 18.39 15.34 15.83 22.18 0.00 0.00 1.06 2.44 1.66 0.97 0.74 8.88 18.59 30.92 4.28 5.58 10.42 69 IG33_SR1 SilentIntergenicRegion 0 6.77 35.42 14.22 25.05 12.06 14.91 19.46 13.72 21.24 16.63 0.00 0.34 0.00 5.82 2.32 1.23 0.88 20.06 24.92 20.30 4.95 6.14 11.53 70 IG33_AR2 ActiveIntergenicRegion 0 9.33 41.78 18.32 45.89 34.64 30.38 20.44 29.31 37.13 38.61 0.10 3.60 0.00 3.70 2.87 0.00 0.00 11.52 18.03 31.79 2.26 8.89 7.27 71 IG33_SR2 SilentIntergenicRegion 0 9.05 35.80 17.12 38.81 21.25 21.60 22.77 19.06 26.37 27.75 0.05 0.25 0.16 2.70 0.90 0.29 0.00 32.64 25.29 26.90 5.56 6.06 7.98 72 IG33_AR3 ActiveIntergenicRegion 0 8.32 31.97 20.02 34.47 24.09 28.02 21.09 14.98 27.41 18.08 0.63 1.67 0.00 1.68 1.00 0.00 0.54 10.89 10.11 24.02 0.58 9.49 4.76 73 IG33_SR3 SilentIntergenicRegion 0 11.74 55.13 20.59 43.27 18.68 17.90 17.42 18.91 22.74 26.49 0.35 0.64 0.00 1.74 0.55 0.27 0.59 17.94 26.80 27.25 2.96 10.28 7.62 74 IG33_AR4 ActiveIntergenicRegion 0 5.78 48.15 10.81 32.37 20.71 23.38 16.29 15.28 21.79 23.35 0.00 3.59 0.00 0.00 2.80 0.00 0.00 19.25 24.66 31.00 5.02 6.62 4.01 75 IG33_SR4 SilentIntergenicRegion 0 7.18 45.37 5.57 18.04 5.99 6.59 4.67 8.04 11.48 11.36 0.00 0.00 0.00 0.36 0.20 0.00 0.00 3.74 5.18 7.36 0.75 2.40 0.80