Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DPY19L3 Gene 0 27.29 63.13 33.91 47.58 47.08 34.33 45.97 31.93 30.76 48.11 64.60 105.18 99.27 65.65 28.73 55.62 65.92 58.20 64.42 86.23 55.38 128.18 63.15 2 392250 Transcript 0 5.91 7.59 4.13 3.30 5.57 8.15 7.55 4.67 1.80 3.58 5.82 17.24 5.41 13.82 9.39 7.18 14.02 15.24 7.75 17.20 11.02 5.14 9.76 3 319326 Transcript 0 0.00 1.90 3.43 0.00 0.00 1.10 1.94 0.00 1.15 0.23 3.87 12.41 8.13 7.58 4.64 1.78 4.40 1.72 1.06 3.40 1.18 8.33 4.11 4 342179 Transcript 0 24.88 71.58 32.13 50.58 39.38 32.77 43.20 35.68 35.92 55.27 84.32 81.62 75.49 97.96 33.82 102.95 86.25 176.34 132.42 119.14 120.86 157.71 111.80 5 392248 Transcript 0 0.62 0.00 3.49 7.64 0.00 0.00 0.28 7.13 10.67 12.49 0.00 0.36 0.00 0.00 0.00 0.00 0.00 19.96 0.00 0.00 0.83 0.09 1.22 6 IG13_AR1 ActiveIntergenicRegion 0 5.52 5.58 14.30 10.82 6.67 1.36 3.18 0.83 1.99 12.38 1.41 2.88 4.47 9.07 13.59 9.57 6.93 2.46 6.16 9.59 7.04 1.35 2.24 7 IG13_SR3 SilentIntergenicRegion 0 2.73 3.29 2.36 3.97 5.35 0.89 5.34 2.15 1.55 4.91 2.18 21.80 5.35 6.76 4.74 5.08 3.97 1.99 3.05 4.36 2.42 0.54 3.43 8 ER1a ExonRegion 0 2.13 7.52 0.47 1.93 7.96 15.34 6.82 1.18 1.01 1.84 3.85 7.72 1.64 17.55 5.92 2.72 12.21 10.05 11.28 13.01 10.30 10.37 11.62 9 E1a_E3a KnownJunction 0 6.96 3.03 3.08 1.63 0.00 2.67 0.00 6.90 1.53 4.11 9.27 30.01 0.00 14.48 4.45 7.78 20.57 28.81 4.52 26.21 17.05 2.94 8.28 10 ER2a ExonRegion 0 0.00 0.66 0.85 0.53 1.22 0.53 0.53 0.00 0.34 3.25 6.99 0.00 1.42 6.21 0.59 7.58 12.35 5.75 1.83 5.03 22.21 9.52 7.37 11 E2a_E3a KnownJunction 0 0.00 6.38 1.77 1.50 4.33 0.00 2.25 0.00 1.74 6.53 30.32 0.00 12.66 12.54 0.00 14.53 30.95 18.53 0.00 10.80 37.93 30.92 23.05 12 ER3a ExonRegion 0 3.40 13.97 5.48 7.89 2.11 0.77 2.72 8.60 8.35 16.84 54.02 40.79 14.19 64.96 22.14 66.48 88.60 49.11 32.36 45.24 67.45 83.94 115.15 13 E3_Ab KnownBoundary 0 3.78 18.88 6.18 11.72 3.31 4.32 3.44 10.35 11.23 24.28 50.49 70.52 21.59 97.65 33.62 119.37 132.40 39.13 65.70 70.31 86.36 132.88 184.04 14 ER3b ExonRegion 0 2.03 7.76 16.57 11.66 4.83 16.40 13.81 16.10 16.64 27.64 64.71 68.80 49.48 66.94 22.58 73.08 96.54 59.40 52.65 99.33 54.68 115.55 88.07 15 E3a_E4a KnownJunction 0 7.26 22.17 36.01 16.58 8.15 21.52 23.63 13.55 23.29 30.19 68.49 99.48 100.16 58.86 29.17 67.50 107.71 74.04 25.69 74.97 44.67 126.94 30.90 16 ER4a ExonRegion 0 4.39 13.28 25.94 19.00 14.04 30.34 29.45 16.08 25.26 32.65 70.20 87.57 115.83 73.64 20.80 60.90 121.63 83.60 46.76 96.75 56.22 89.83 51.59 17 E4_Da KnownBoundary 0 0.00 3.16 11.62 9.82 0.00 25.95 19.25 9.65 11.46 9.51 22.06 24.46 32.14 24.72 0.00 26.92 49.18 38.76 8.19 53.50 35.71 37.23 38.75 18 E4a_E4b KnownJunction 0 0.00 0.00 6.98 15.28 0.00 0.00 0.00 14.25 20.51 24.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39.46 0.00 0.00 0.00 0.00 0.00 19 E4_Ab KnownBoundary 0 3.26 3.35 3.10 18.11 18.68 42.31 27.65 5.71 15.68 23.37 68.39 25.81 27.92 21.07 0.00 44.86 60.87 35.28 40.19 96.64 32.43 57.74 39.35 20 ER4b ExonRegion 1 4.23 9.76 19.36 27.26 18.20 58.31 48.72 15.90 30.14 36.47 103.60 81.39 86.30 93.87 15.09 80.84 132.04 92.39 68.17 144.25 69.20 107.93 79.29 21 ER4c ExonRegion 0 1.70 18.36 26.39 21.41 14.15 31.27 37.70 15.21 32.94 34.71 88.71 83.51 93.18 75.03 27.14 57.92 102.20 59.57 47.61 121.47 66.31 132.71 64.41 22 E4_Db KnownBoundary 0 0.00 2.83 15.76 3.80 0.00 0.00 7.95 9.20 5.21 8.22 0.00 37.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.13 0.00 0.00 7.51 23 E4b_E5a KnownJunction 1 0.00 20.39 18.66 15.18 23.51 7.67 21.82 9.00 23.06 23.61 52.64 82.23 182.94 50.68 18.54 79.98 90.42 41.70 63.63 100.48 88.40 125.96 56.94 24 ER4d ExonRegion 0 8.64 12.23 8.83 6.33 8.74 6.45 15.82 5.93 2.86 4.79 4.35 13.99 14.59 9.41 17.80 11.04 9.29 6.85 7.44 12.37 5.71 2.12 9.39 25 E4_Dc NovelBoundary 0 16.74 2.76 2.93 12.42 3.31 0.00 0.00 1.77 3.21 1.40 0.00 0.00 0.00 0.00 0.00 3.93 0.00 0.00 0.00 9.01 0.00 0.00 0.00 26 ER5a ExonRegion 0 6.70 43.62 24.06 18.42 22.02 13.90 23.16 10.79 32.51 33.06 73.49 120.42 152.92 102.98 25.82 74.34 106.75 79.94 86.00 115.97 100.86 157.75 82.03 27 E5a_E6a KnownJunction 0 3.78 51.11 15.91 21.41 40.15 30.55 27.87 11.79 38.57 38.82 64.65 117.34 133.27 95.47 19.66 77.93 84.81 70.55 53.65 69.93 111.63 98.34 85.96 28 ER5b ExonRegion 0 1.23 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.82 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 1.65 0.17 2.45 29 ER6a ExonRegion 1 10.65 35.82 16.51 26.30 42.18 32.57 46.37 22.57 37.73 30.78 67.22 163.99 200.21 109.00 26.35 79.18 80.66 70.34 89.32 84.44 91.26 177.59 99.17 30 E6a_E7a KnownJunction 1 10.74 28.28 10.91 25.97 47.45 28.11 34.49 30.56 48.41 33.66 65.81 202.27 204.05 152.98 26.70 72.20 73.31 80.05 104.29 84.12 112.25 183.46 167.31 31 ER7a ExonRegion 1 8.99 26.55 11.58 22.32 43.73 26.69 33.73 22.00 34.63 43.17 71.45 154.53 181.02 119.12 24.32 91.83 89.01 70.75 103.55 107.88 102.68 158.99 93.73 32 E7_Da NovelBoundary 0 3.11 6.12 0.00 4.10 4.33 20.22 4.33 0.00 1.50 1.67 0.00 6.15 6.82 0.00 5.69 3.85 0.00 6.14 4.42 12.08 5.75 0.00 0.00 33 E7a_E8a KnownJunction 0 7.33 39.07 4.91 9.59 14.86 24.59 18.90 13.76 34.26 34.44 67.44 110.59 172.55 83.94 23.36 48.62 67.60 63.34 77.18 95.24 73.39 123.39 113.19 34 ER8a ExonRegion 1 8.74 44.76 17.71 22.29 32.86 29.86 44.91 16.71 31.34 47.24 93.32 174.96 170.69 127.26 23.65 105.44 126.02 109.82 116.09 141.27 107.56 158.38 122.53 35 E8a_E9a KnownJunction 1 14.82 37.56 23.62 22.71 43.04 43.44 34.40 18.89 32.20 45.58 92.44 122.59 69.64 111.90 16.44 81.69 72.65 120.80 70.68 139.40 125.72 143.47 97.74 36 ER9a ExonRegion 0 9.34 40.99 18.57 22.79 49.45 40.07 36.26 15.07 27.03 30.17 95.63 133.92 115.65 104.12 22.63 87.78 123.99 111.48 112.86 130.24 114.85 153.39 122.75 37 E9a_E10a KnownJunction 1 10.37 48.22 25.25 14.35 28.44 18.85 15.28 6.61 21.21 22.48 89.71 112.84 76.78 88.41 9.39 56.14 80.97 122.41 96.66 148.22 93.04 141.94 107.73 38 ER10a ExonRegion 0 9.44 39.18 16.35 17.82 35.05 32.59 41.36 11.41 20.96 27.17 93.34 149.07 164.44 91.73 18.70 57.82 89.95 82.24 72.35 104.63 74.14 138.68 79.24 39 E10a_E11a KnownJunction 1 20.45 54.27 15.85 27.04 35.23 26.18 63.90 21.24 21.61 19.13 86.44 154.55 187.00 91.29 13.72 68.79 76.86 24.13 109.56 53.37 34.16 137.84 105.42 40 E10a_E12a NovelJunction 0 2.82 6.05 0.00 0.00 4.07 0.00 0.00 0.00 1.30 1.53 2.05 7.65 0.00 2.35 0.00 0.00 0.00 15.46 0.00 6.33 0.00 2.45 0.00 41 ER11a ExonRegion 0 11.18 37.66 16.47 19.17 41.61 27.79 41.26 10.98 26.59 34.32 77.28 116.77 116.10 85.11 19.20 74.97 76.37 42.14 57.40 88.99 38.72 172.30 93.80 42 E11a_E12a KnownJunction 1 3.70 47.56 16.74 16.05 16.64 50.31 37.36 7.72 23.84 26.70 75.97 100.53 136.84 105.36 4.45 68.19 64.80 27.44 22.59 65.96 49.61 189.82 44.64 43 ER12a ExonRegion 1 10.61 34.96 12.40 21.94 18.59 41.95 41.56 15.14 30.84 28.04 85.62 178.68 170.11 81.34 12.90 62.25 75.21 50.44 27.20 83.73 53.43 147.62 57.78 44 E12a_E13a KnownJunction 0 10.00 57.62 11.00 32.10 26.23 48.44 71.37 16.88 27.55 39.14 80.18 191.61 120.45 71.16 20.77 82.63 70.78 55.63 58.07 94.09 89.45 140.90 82.12 45 ER13a ExonRegion 1 12.18 46.98 18.90 25.07 33.09 30.86 46.20 24.20 38.79 41.22 101.98 121.50 112.74 92.83 18.01 80.71 101.44 75.55 64.53 128.96 81.08 162.62 91.98 46 E13a_E14a KnownJunction 1 5.63 46.31 23.86 32.50 30.05 29.47 44.65 35.78 35.79 45.67 105.40 88.08 191.87 114.84 13.35 81.52 97.99 70.10 121.98 120.23 71.48 147.45 93.98 47 ER14a ExonRegion 1 11.53 43.60 28.02 27.66 43.79 29.86 46.70 28.77 40.19 51.92 122.51 139.18 103.87 106.80 18.19 74.62 114.94 88.30 75.31 152.14 97.59 170.34 86.05 48 E14a_E15a KnownJunction 0 20.82 59.86 40.51 29.07 58.66 20.33 51.41 39.88 59.98 57.48 130.45 70.52 61.03 122.84 22.99 126.98 104.07 94.85 83.20 179.80 73.82 150.08 92.53 49 ER15a ExonRegion 0 19.54 41.54 34.08 32.75 43.91 37.15 48.96 35.00 40.39 57.32 127.83 148.44 109.55 120.07 30.26 95.59 124.93 103.89 89.96 150.65 114.32 193.90 104.70 50 E15a_E16a KnownJunction 1 25.12 45.06 35.24 32.83 47.37 51.28 52.69 31.01 27.84 43.49 104.13 153.35 143.98 148.57 26.70 103.56 105.84 91.90 60.61 179.03 67.58 220.62 101.24 51 ER16a ExonRegion 0 17.49 42.78 25.56 19.73 36.10 47.49 31.36 23.38 21.34 38.27 104.78 127.07 110.75 121.21 31.05 80.51 102.04 93.98 92.54 157.67 70.87 176.62 93.05 52 E16a_E18a KnownJunction 1 3.56 53.21 14.49 20.94 3.31 24.59 22.35 18.15 17.19 32.74 60.80 72.62 32.63 93.30 8.90 51.52 64.14 83.98 75.39 78.17 55.91 113.83 100.81 53 E16a_E19a NovelJunction 0 0.00 3.35 2.69 3.53 0.00 16.81 10.11 4.56 6.22 4.92 0.00 13.80 0.00 0.00 4.45 0.00 4.77 2.07 0.00 3.20 0.00 5.02 4.35 54 I16 Intron 0 2.44 18.94 4.32 6.39 3.49 4.18 9.46 4.87 5.48 7.24 6.71 23.10 19.43 10.56 1.33 8.78 10.97 6.47 7.12 24.16 3.83 12.35 8.35 55 I16_SR1 SilentIntronRegion 0 2.52 10.53 1.79 4.05 3.09 4.49 9.50 3.70 5.61 5.68 7.17 22.54 20.49 10.64 1.28 10.20 10.75 6.28 7.02 24.80 3.93 11.09 9.25 56 I16_AR1 ActiveIntronRegion 0 2.28 36.07 6.75 10.25 3.29 2.61 7.43 4.79 5.10 9.72 5.58 19.43 14.59 10.98 1.47 6.20 11.63 6.93 7.12 24.05 4.36 13.61 6.59 57 I16_SR2 SilentIntronRegion 0 2.39 22.97 13.56 10.23 6.64 6.82 15.21 12.66 5.78 10.01 7.16 37.68 27.06 8.95 1.23 7.26 10.52 6.42 7.82 20.54 1.62 16.90 7.80 58 ER17a ExonRegion 0 0.00 1.90 3.43 0.00 0.00 1.10 1.94 0.00 1.15 0.23 3.87 12.41 8.13 7.58 4.64 1.78 4.40 1.72 1.06 3.40 1.18 8.33 4.11 59 I17 Intron 0 10.40 34.36 15.99 19.13 12.74 7.14 25.90 10.42 8.95 19.08 23.56 68.88 62.26 32.65 9.62 21.76 26.03 11.78 22.02 36.83 12.86 41.50 20.75 60 I17_AR1 ActiveIntronRegion 0 10.42 34.43 16.02 19.17 12.77 7.15 25.95 10.44 8.97 19.11 23.60 69.01 62.38 32.71 9.64 21.80 26.08 11.80 22.06 36.90 12.88 41.59 20.79 61 E18_Aa NovelBoundary 0 12.67 18.02 18.04 5.33 4.33 0.00 24.69 3.74 3.33 5.69 25.85 6.30 0.00 11.30 13.72 32.04 15.99 5.39 15.62 34.96 11.12 18.25 16.30 62 ER18a ExonRegion 0 22.03 62.67 21.98 29.57 26.31 28.72 43.31 22.68 26.93 40.64 83.81 98.59 72.89 82.36 30.06 91.89 87.65 114.69 103.70 115.41 95.61 154.21 99.17 63 E18_Da NovelBoundary 0 15.11 5.20 14.87 11.42 0.00 0.00 13.03 9.61 6.60 14.45 2.05 24.61 13.31 6.47 0.00 7.52 12.44 5.68 34.73 17.77 0.00 11.45 7.60 64 E18a_E19a KnownJunction 0 22.82 57.23 22.56 38.06 55.52 21.75 45.89 22.30 23.70 34.17 73.44 82.23 100.64 103.24 31.65 108.77 99.95 115.57 33.51 94.66 101.31 127.92 71.02 65 I18 Intron 0 8.43 27.00 7.31 11.99 6.97 5.14 9.91 11.62 8.35 11.73 7.38 11.31 13.67 7.13 3.70 11.53 11.13 15.59 16.60 22.33 8.91 10.34 9.99 66 I18_AR1 ActiveIntronRegion 0 3.84 20.12 12.38 14.59 3.03 1.04 7.72 16.66 6.75 11.65 1.33 15.21 17.57 6.29 0.14 7.92 2.48 5.78 10.92 14.78 2.20 7.55 2.87 67 I18_SR1 SilentIntronRegion 0 5.19 25.63 8.71 10.12 4.68 3.45 9.29 15.57 7.05 13.52 4.99 8.87 13.77 6.29 4.41 11.08 10.69 15.58 16.23 24.66 8.67 8.75 11.70 68 I18_AR2 ActiveIntronRegion 0 3.50 27.44 2.49 4.61 3.22 2.14 6.39 7.68 5.60 6.45 8.37 6.24 8.52 7.15 1.35 12.78 9.01 17.14 21.06 21.43 11.17 7.87 7.36 69 I18_AR3 ActiveIntronRegion 0 9.01 26.13 6.45 12.36 8.27 5.32 10.17 9.38 9.41 11.02 9.48 13.76 12.77 7.90 4.15 11.95 12.02 17.16 15.67 21.24 9.56 11.99 10.10 70 I18_SR2 SilentIntronRegion 0 21.20 37.61 8.49 20.97 12.84 12.84 14.09 10.10 10.93 13.11 7.82 11.42 19.59 7.17 2.81 11.88 13.74 12.15 20.49 23.24 7.67 11.67 8.76 71 E19_Aa NovelBoundary 0 3.78 17.63 8.54 13.29 15.62 13.40 17.89 12.61 10.24 17.73 4.90 6.30 20.62 7.42 0.00 8.29 13.46 35.15 18.82 24.03 14.27 25.17 11.95 72 ER19a ExonRegion 0 25.00 65.29 30.85 60.05 28.75 30.68 34.60 37.17 31.39 65.60 113.88 100.39 85.83 108.83 38.89 114.64 100.49 219.33 136.49 134.44 158.80 145.28 132.08 73 E19a_E20a KnownJunction 1 11.34 61.96 26.70 63.86 23.94 34.01 43.06 42.51 46.93 58.02 80.18 36.46 68.02 131.91 64.78 185.42 80.41 334.16 306.83 152.38 136.16 270.16 209.82 74 E20_Aa NovelBoundary 0 0.00 0.00 1.83 0.00 4.33 0.00 14.88 11.95 2.69 3.33 0.00 0.00 0.00 2.47 0.00 3.59 0.00 16.87 0.00 3.00 2.59 0.00 0.00 75 ER20a ExonRegion 0 20.09 55.02 34.47 42.74 29.16 33.71 36.48 40.85 36.44 58.54 88.27 48.50 34.66 110.60 36.46 109.30 104.20 235.63 171.77 129.68 183.74 136.69 122.03 76 E20a_E21a KnownJunction 0 34.38 83.67 36.13 42.95 50.51 24.36 36.08 35.57 47.51 56.54 75.97 36.31 44.64 65.69 15.20 88.87 65.73 240.10 136.10 120.74 172.54 88.85 76.31 77 I20_AR2 ActiveIntronRegion 0 5.68 11.44 6.95 9.14 16.05 15.82 12.13 5.80 7.58 10.25 4.35 1.50 5.79 8.05 1.54 10.03 11.14 19.74 15.53 8.17 4.23 18.84 13.21 78 ER21a ExonRegion 0 59.87 133.59 69.90 106.51 97.57 64.33 83.85 66.21 57.26 95.94 98.17 177.90 164.57 87.73 44.66 73.22 87.39 67.30 95.57 127.62 62.77 224.76 83.12 79 IG14_AR1 ActiveIntergenicRegion 0 120.01 198.08 148.82 132.82 103.63 59.40 70.21 82.91 52.79 91.54 72.19 81.00 101.26 67.13 88.30 58.54 57.34 74.99 84.92 92.11 75.65 183.37 74.88 80 IG14_AR3 ActiveIntergenicRegion 0 0.84 4.82 0.72 0.00 1.06 3.64 1.57 0.00 0.00 0.00 5.35 0.00 0.00 3.55 6.81 1.18 0.00 1.46 2.52 0.84 7.84 0.82 4.64