Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF345 Gene 0 27.74 22.11 15.25 32.35 39.81 21.63 29.15 28.16 17.89 30.65 8.60 9.64 12.66 10.97 12.12 12.32 5.21 15.11 17.08 19.00 4.75 13.73 9.01 2 318177 Transcript 0 14.02 10.11 5.54 14.59 13.14 7.24 11.93 11.82 8.43 11.98 3.74 4.03 6.00 5.42 6.65 7.72 2.32 6.89 8.37 8.65 2.69 5.09 4.17 3 420450 Transcript 0 39.18 40.82 12.64 5.62 40.85 70.18 30.19 9.06 15.57 9.32 3.16 0.00 2.63 9.59 8.70 22.54 11.67 30.10 10.10 24.86 13.38 4.17 24.57 4 432005 Transcript 0 0.96 2.18 12.01 3.13 7.84 8.64 2.01 13.99 16.48 10.18 0.35 1.08 1.17 0.20 0.98 0.45 0.50 12.49 1.45 26.32 7.62 0.34 2.23 5 344705 Transcript 0 2.89 3.85 5.16 7.11 14.90 2.21 11.70 4.00 3.36 8.89 2.05 0.00 0.00 0.00 2.16 1.67 0.00 1.62 3.67 4.70 2.41 3.58 1.66 6 ER1a ExonRegion 0 5.57 0.67 1.20 4.01 5.18 7.84 7.47 7.63 7.27 6.75 6.36 0.00 0.00 2.64 3.20 5.96 3.26 8.44 8.51 6.30 2.90 0.00 3.87 7 E1_Da NovelBoundary 0 7.56 0.00 3.49 3.80 14.01 2.61 0.00 8.42 6.28 9.37 9.53 0.00 0.00 2.24 0.00 0.00 0.00 6.26 0.00 9.72 2.47 0.00 0.00 8 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 E2_Aa NovelBoundary 0 23.63 2.50 0.00 2.06 12.99 42.53 14.62 11.34 14.32 11.28 10.11 6.30 0.00 4.94 4.45 0.00 0.00 13.64 11.86 12.27 8.22 0.00 7.85 10 ER2a ExonRegion 0 39.18 40.82 12.64 5.62 40.85 70.18 30.19 9.06 15.57 9.32 3.16 0.00 2.63 9.59 8.70 22.54 11.67 30.10 10.10 24.86 13.38 4.17 24.57 11 E2_Ab KnownBoundary 0 130.54 114.19 31.02 17.15 114.94 185.29 87.53 28.67 58.19 35.78 12.95 0.00 6.82 24.19 26.70 62.12 17.48 82.24 41.41 76.89 30.09 7.96 71.19 12 ER2b ExonRegion 0 52.02 49.56 17.32 13.02 63.65 94.25 32.51 15.10 33.71 18.23 1.78 2.05 2.35 12.27 10.31 26.75 5.13 56.40 25.65 39.14 16.41 3.62 31.38 13 E2_Da NovelBoundary 0 25.34 2.83 0.00 3.53 0.00 0.00 2.16 6.28 10.19 11.55 0.00 0.00 0.00 4.41 9.64 7.78 0.00 7.09 8.19 8.88 0.00 8.57 0.00 14 E2a_E3b KnownJunction 0 9.56 9.27 7.24 13.92 20.71 13.23 6.54 10.93 33.77 16.49 0.00 6.15 0.00 2.47 0.00 3.42 0.00 45.85 3.67 11.38 7.48 0.00 3.84 15 E3_Aa NovelBoundary 0 7.33 6.05 6.45 12.62 0.00 0.00 10.29 14.46 22.40 11.39 2.63 0.00 0.00 2.47 10.88 10.25 3.93 12.31 4.52 14.64 3.15 5.82 0.00 16 ER3a ExonRegion 0 7.89 10.88 4.08 13.59 5.79 3.08 7.80 8.41 12.33 10.49 2.78 1.56 1.91 5.80 4.62 14.17 2.72 7.53 6.15 12.68 4.26 1.70 2.88 17 E3_Ab KnownBoundary 0 12.82 2.89 11.18 7.56 0.00 6.98 11.53 16.72 20.08 8.27 0.00 0.00 0.00 7.36 8.90 12.39 4.77 17.82 9.60 2.88 2.59 5.63 11.35 18 ER3b ExonRegion 0 5.95 8.00 16.43 15.40 11.21 15.98 3.36 22.28 38.64 18.95 7.94 1.35 1.33 5.29 12.86 5.18 11.06 28.91 14.59 18.89 10.84 5.55 6.75 19 E3_Da NovelBoundary 0 2.89 0.00 10.05 13.25 3.57 2.21 4.24 33.52 16.70 7.58 0.00 0.00 0.00 0.00 8.90 3.33 4.77 9.00 0.00 20.58 0.00 0.00 0.00 20 E3a_E4a KnownJunction 0 10.59 8.35 3.10 20.44 24.70 4.94 2.21 7.23 15.60 13.62 5.32 0.00 0.00 4.83 0.00 0.00 18.51 10.11 28.61 8.69 11.68 4.96 0.00 21 E3a_E5a KnownJunction 0 0.00 0.00 15.02 1.27 11.21 2.44 0.00 16.59 14.44 12.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.47 0.00 27.10 11.00 0.00 0.00 22 I3_AR1 ActiveIntronRegion 0 7.60 6.27 8.02 8.40 9.06 5.43 9.19 19.91 13.32 10.05 0.68 0.24 0.03 3.51 2.26 3.36 4.19 5.47 3.36 11.49 2.39 0.73 1.52 23 I3_SR4 SilentIntronRegion 0 3.85 0.00 0.89 6.81 13.38 3.67 1.56 12.10 11.68 13.76 1.93 8.27 0.00 0.00 0.00 5.40 0.00 3.53 2.03 19.92 0.20 0.00 0.00 24 E4_Aa NovelBoundary 0 0.00 6.64 6.50 17.45 11.29 2.73 4.46 11.05 4.54 2.58 2.21 6.30 6.33 0.00 0.00 0.00 0.00 1.99 18.45 9.52 0.00 2.69 0.00 25 ER4a ExonRegion 0 5.10 10.53 5.33 26.30 20.78 11.00 3.35 8.64 14.60 17.74 8.07 0.00 6.35 3.25 0.17 10.14 9.90 9.89 19.49 8.39 13.74 12.38 0.00 26 ER4b ExonRegion 0 10.50 16.12 6.63 36.60 33.00 16.16 14.12 13.25 19.49 22.56 7.37 2.41 21.71 13.84 6.45 28.40 5.38 18.82 12.86 13.40 11.92 14.28 8.92 27 ER4c ExonRegion 0 13.46 18.95 9.85 33.60 35.32 25.49 22.22 26.88 20.29 30.60 14.54 7.23 14.73 17.74 6.41 13.37 9.44 18.53 12.52 27.06 1.37 8.73 13.86 28 E4_Ac KnownBoundary 0 20.15 9.27 16.29 35.76 50.93 19.82 41.65 34.71 17.97 40.96 10.69 12.60 0.00 12.30 4.45 3.25 0.00 12.27 25.04 8.05 0.00 7.65 3.33 29 ER4d ExonRegion 0 11.83 14.05 13.94 41.49 45.92 44.76 48.02 32.38 14.62 33.69 19.16 6.73 11.47 13.81 3.94 9.66 3.30 7.72 31.57 8.89 0.79 17.00 1.99 30 E4_Db KnownBoundary 0 18.89 28.88 8.52 52.31 44.74 33.62 39.26 26.62 14.03 23.40 11.63 6.30 26.95 12.18 4.45 16.06 9.26 2.11 13.55 16.04 3.15 13.66 8.28 31 E4b_E4d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER4e ExonRegion 0 29.50 35.91 6.95 32.30 36.90 27.62 19.98 23.61 14.51 33.60 12.26 4.14 19.32 11.68 4.24 12.69 4.78 12.88 17.54 29.02 1.02 10.23 10.30 33 E4_Ad KnownBoundary 0 36.97 24.80 6.30 28.20 56.11 14.99 27.47 22.55 18.72 36.96 2.68 0.00 26.78 16.83 10.14 11.02 0.00 28.31 7.91 23.07 2.66 12.12 3.76 34 ER4f ExonRegion 0 22.83 24.77 11.59 34.66 37.40 21.01 31.22 27.23 18.07 33.62 10.89 9.26 9.51 12.88 8.98 18.04 8.13 23.82 19.79 31.08 5.76 11.54 7.65 35 E4_Dc KnownBoundary 0 47.71 44.33 16.35 35.16 66.30 36.00 57.59 49.17 20.69 59.15 14.11 12.60 6.82 15.66 35.60 19.14 0.00 30.55 9.41 41.87 2.90 11.70 11.27 36 E4c_E4e KnownJunction 0 5.78 7.70 10.32 14.22 29.80 4.43 23.41 8.01 6.71 17.78 4.11 0.00 0.00 0.00 4.33 3.33 0.00 3.23 7.34 9.40 4.82 7.16 3.33 37 ER4g ExonRegion 0 26.94 25.20 14.56 29.15 35.85 22.96 33.83 28.82 20.03 40.71 10.60 12.71 7.66 12.90 10.91 20.84 9.29 19.21 22.31 24.61 8.89 11.92 10.56 38 E4_Ae KnownBoundary 0 23.56 14.67 10.35 36.26 55.94 18.51 51.36 20.91 19.27 37.45 7.69 19.51 0.00 6.83 8.90 15.72 3.74 12.89 31.25 16.30 13.90 16.90 15.11 39 ER4h ExonRegion 0 28.81 19.73 18.76 34.11 55.45 22.77 38.47 31.36 20.66 37.65 14.32 8.38 12.77 12.98 12.26 13.63 6.53 17.79 24.84 19.94 5.97 14.70 12.93 40 E4_Dd KnownBoundary 0 31.26 0.00 25.13 38.59 68.68 27.60 66.69 36.68 17.39 39.14 14.74 12.00 13.31 7.06 8.90 3.16 8.98 12.15 3.95 18.86 0.00 8.76 4.35 41 ER4i ExonRegion 0 26.58 23.07 22.79 42.79 56.04 25.59 33.57 41.82 21.53 40.40 7.23 12.94 9.29 8.03 13.36 9.97 3.89 7.44 7.82 14.78 1.58 21.20 2.87 42 E4_De KnownBoundary 0 28.52 46.18 12.36 40.85 55.77 40.66 50.79 28.09 8.51 39.57 7.26 0.00 20.13 7.06 15.20 3.93 0.00 2.57 4.80 5.69 0.00 33.74 0.00 43 ER4j ExonRegion 0 42.61 28.91 16.88 40.75 41.58 18.03 32.46 31.25 14.12 30.68 5.81 14.57 22.11 13.25 18.77 10.75 3.31 11.60 18.82 15.60 3.62 18.66 9.94 44 E4_Df NovelBoundary 0 46.67 18.15 11.15 34.49 6.96 2.67 26.98 38.49 9.84 16.84 5.05 7.20 15.10 0.00 0.00 0.00 4.77 1.53 8.09 15.28 0.00 0.00 0.00 45 ER5a ExonRegion 0 1.93 4.37 8.99 5.00 4.48 14.85 4.02 11.39 18.53 8.19 0.69 2.16 2.35 0.41 1.97 0.90 1.00 18.52 2.90 25.54 4.24 0.68 4.46