Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KIAA0355 Gene 0 56.06 57.76 52.94 47.30 62.58 56.80 44.11 75.40 80.24 90.15 58.00 43.07 51.15 58.52 40.52 54.07 55.44 55.81 40.96 37.36 41.41 73.17 54.32 2 299505 Transcript 0 37.51 33.39 37.76 31.70 39.77 50.65 36.10 63.33 77.72 82.79 66.47 33.29 51.05 68.04 37.93 65.52 68.31 70.50 46.56 41.17 49.88 67.36 69.99 3 IG38_AR1 ActiveIntergenicRegion 0 12.09 31.96 6.13 4.09 1.53 5.24 3.97 12.10 7.41 5.08 3.87 1.24 0.00 1.62 9.53 10.61 19.81 18.48 0.00 24.92 2.20 0.00 0.42 4 IG38_SR2 SilentIntergenicRegion 0 7.14 28.58 6.38 8.99 9.90 8.17 11.73 10.12 9.93 8.59 1.23 6.10 7.91 1.99 6.94 7.75 6.45 13.16 11.94 24.99 0.97 2.08 9.61 5 IG38_AR2 ActiveIntergenicRegion 0 9.50 34.94 7.04 11.42 21.55 9.20 13.36 16.10 12.21 8.70 1.47 9.39 5.11 1.05 10.54 7.28 7.25 10.14 15.36 22.14 1.29 1.96 5.25 6 ER1a ExonRegion 1 32.61 39.24 10.21 5.64 18.02 11.00 14.17 19.01 22.64 20.54 38.57 0.00 1.83 20.81 11.20 28.89 52.09 8.57 18.61 16.06 23.45 21.29 52.86 7 E1a_E2a KnownJunction 1 186.63 124.58 31.08 18.78 70.29 61.21 41.69 54.46 73.58 66.30 163.52 0.00 6.82 48.56 17.80 102.54 211.13 33.29 95.91 55.54 73.70 54.93 183.79 8 I1_AR4 ActiveIntronRegion 1 16.31 1.28 1.23 8.08 2.68 1.83 7.36 7.17 6.54 2.42 0.86 0.00 2.43 0.42 2.90 16.62 0.61 10.40 8.85 6.93 0.00 1.85 2.72 9 I1_SR4 SilentIntronRegion 0 12.83 3.45 3.62 3.29 9.49 2.33 8.66 6.82 4.14 5.21 0.99 3.33 6.97 0.92 2.81 3.70 3.43 3.61 2.71 4.62 0.62 0.79 3.02 10 I1_AR3 ActiveIntronRegion 0 11.16 3.33 5.86 4.20 8.28 3.49 5.77 16.56 8.26 12.90 1.56 7.12 2.65 1.23 3.37 5.58 2.76 5.25 3.11 3.75 1.79 0.96 5.09 11 I1_SR4 SilentIntronRegion 0 11.60 4.31 4.21 3.25 6.53 4.96 5.55 12.68 8.75 6.55 1.07 3.23 3.00 1.05 0.94 2.68 2.82 5.56 2.51 3.71 1.73 0.36 4.71 12 ER2a ExonRegion 0 40.23 32.55 26.34 30.60 43.76 41.37 41.50 59.70 73.99 80.48 58.02 67.94 77.89 51.77 32.33 42.93 59.10 42.55 37.50 37.49 35.19 67.97 55.84 13 E2a_E3a KnownJunction 0 17.56 13.02 24.19 19.68 35.06 45.60 31.27 52.16 60.53 54.07 57.07 80.73 44.64 59.80 25.96 23.75 57.32 62.93 55.15 26.27 55.35 59.89 56.68 14 ER3a ExonRegion 0 12.64 21.86 17.76 18.02 25.05 39.15 29.95 40.63 44.26 42.55 47.71 30.82 41.36 53.09 32.38 34.92 50.14 42.45 22.98 23.96 32.42 54.46 47.48 15 E3a_E4a KnownJunction 0 20.37 6.45 10.17 10.62 53.74 35.15 24.42 42.31 39.26 45.53 41.33 7.20 18.99 97.24 41.91 51.44 46.94 44.15 26.45 26.97 32.87 62.46 54.89 16 I3_AR1 ActiveIntronRegion 0 12.52 9.31 6.26 8.70 10.64 0.76 5.49 19.14 18.79 15.21 2.12 1.30 4.03 1.73 7.10 7.70 8.25 9.30 6.61 5.59 3.50 1.27 9.30 17 ER4a ExonRegion 0 30.04 28.22 17.68 23.05 39.76 36.48 41.60 49.03 64.09 77.16 44.43 26.50 28.21 59.09 24.98 48.73 51.62 52.77 24.74 40.92 33.20 58.19 51.57 18 E4a_E5a KnownJunction 0 42.82 28.74 24.42 27.30 48.81 50.14 66.95 68.84 76.16 96.49 62.65 57.32 52.11 73.17 32.39 65.37 55.17 75.65 35.67 37.90 32.31 77.09 74.69 19 ER5a ExonRegion 0 36.53 27.71 23.08 25.36 28.07 36.98 34.49 48.50 70.68 83.49 62.32 38.92 59.80 71.99 38.68 77.00 70.45 62.34 37.99 35.33 49.58 55.06 67.11 20 E5a_E6a KnownJunction 1 9.63 31.18 26.31 13.58 29.54 33.16 15.50 37.38 67.24 75.80 43.17 56.87 13.64 57.51 9.27 67.93 62.93 41.79 20.89 40.01 57.82 32.27 57.79 21 ER6a ExonRegion 0 17.99 31.91 19.24 23.29 31.89 45.65 31.95 37.80 64.92 57.98 42.33 35.62 24.12 56.87 29.51 58.98 57.26 73.41 40.58 42.71 44.21 61.73 44.48 22 E6a_E7a KnownJunction 0 33.19 29.53 28.15 27.30 53.23 30.21 36.26 30.76 80.35 58.64 51.17 24.16 33.60 69.75 67.12 58.28 83.50 59.57 57.79 48.07 42.19 73.36 60.01 23 E7_Aa NovelBoundary 0 34.52 22.50 9.46 13.52 23.77 18.80 14.75 10.39 9.49 2.58 0.00 0.00 0.00 0.00 5.69 0.00 7.85 15.59 0.00 6.07 0.00 0.00 11.10 24 ER7a ExonRegion 0 40.64 20.18 39.93 32.49 25.09 36.15 28.39 52.77 80.78 78.51 60.31 15.90 33.27 65.01 27.99 38.81 47.73 69.70 46.62 46.26 46.21 64.54 49.02 25 E7a_E8a KnownJunction 0 33.41 31.90 41.90 33.53 18.85 26.18 38.11 58.94 74.54 75.80 38.38 38.26 35.39 33.02 18.54 30.42 72.84 65.25 30.78 50.88 27.49 63.07 36.62 26 E7a_E9a NovelJunction 0 11.04 0.00 4.26 0.00 0.00 0.00 0.00 0.00 3.36 1.10 0.00 5.70 0.00 2.47 10.75 0.00 4.77 0.00 0.00 5.75 2.84 0.00 0.00 27 ER8a ExonRegion 0 56.15 43.80 45.18 34.45 29.19 59.11 43.61 65.24 87.48 88.84 73.43 22.93 36.47 89.92 33.57 89.16 61.30 106.11 56.36 52.63 55.09 81.04 83.09 28 E8a_E9a KnownJunction 0 40.01 50.52 41.81 23.44 50.59 54.97 45.40 76.73 89.78 84.99 88.76 24.91 75.48 90.12 40.79 54.43 55.26 111.51 98.54 57.59 54.73 82.91 76.06 29 ER9a ExonRegion 0 31.39 36.67 40.80 26.39 33.19 63.14 39.55 62.07 84.97 85.76 63.37 32.30 54.34 68.66 39.05 69.30 64.26 95.50 54.20 43.57 58.57 69.47 78.36 30 E9a_E10a KnownJunction 0 51.64 26.71 35.75 35.13 44.65 93.75 27.12 61.57 87.38 89.93 85.13 31.51 40.91 67.75 17.80 60.16 71.90 78.55 61.18 55.48 73.02 78.69 89.72 31 I9 Intron 0 13.63 6.04 5.76 8.97 8.44 3.94 8.77 8.29 7.09 7.44 2.20 3.47 8.36 1.89 2.38 3.75 3.54 9.34 2.61 5.10 1.53 2.76 3.52 32 I9_SR1 SilentIntronRegion 0 13.92 6.11 6.04 9.35 8.55 4.12 8.97 8.60 7.43 7.77 2.30 3.64 8.58 1.98 2.49 3.90 3.71 9.79 2.64 5.20 1.60 2.88 3.66 33 E10_Aa NovelBoundary 0 16.67 15.33 12.30 11.65 10.36 2.44 19.21 13.35 2.84 16.63 2.11 0.00 12.82 0.00 0.00 0.00 4.02 0.00 9.51 11.38 0.00 3.12 0.00 34 ER10a ExonRegion 0 37.51 32.28 52.39 43.03 48.31 68.76 45.06 86.11 108.83 111.87 88.51 59.34 65.88 81.28 44.29 79.39 84.95 89.21 58.17 43.12 69.43 90.52 81.74 35 E10_Da NovelBoundary 0 25.78 0.00 23.24 14.58 4.33 4.32 7.77 16.22 7.96 8.70 5.37 12.60 0.00 4.94 0.00 4.36 3.65 6.59 9.04 11.76 11.55 0.00 8.54 36 E10a_E11a KnownJunction 0 25.56 20.59 32.82 31.56 61.97 66.44 43.54 64.90 63.69 93.80 67.17 41.71 46.43 75.76 40.05 82.54 69.94 64.67 20.89 47.55 70.98 49.72 49.00 37 I10_AR1 ActiveIntronRegion 0 14.99 4.03 5.69 7.48 8.34 9.87 8.63 8.76 3.65 7.26 3.29 2.02 3.28 3.06 1.74 3.37 3.74 5.20 5.42 7.84 3.12 4.72 4.16 38 I10_AR2 ActiveIntronRegion 0 15.04 13.54 9.33 18.83 17.82 8.31 15.62 9.57 8.60 9.03 2.22 9.60 19.19 4.67 9.07 7.16 9.90 7.24 8.12 7.26 5.03 5.92 7.90 39 E11_Aa NovelBoundary 0 6.67 3.35 15.02 12.12 32.68 8.01 20.80 4.11 4.86 5.88 0.00 0.00 6.82 12.13 4.45 0.00 0.00 7.54 4.80 3.26 11.31 5.69 0.00 40 ER11a ExonRegion 0 13.20 19.02 26.81 21.19 25.90 35.42 25.12 43.69 50.60 71.74 51.02 23.26 43.23 61.42 33.91 46.26 47.15 52.75 32.99 32.63 46.16 48.01 55.96 41 E11_Da NovelBoundary 0 20.08 11.71 10.64 18.35 14.86 12.32 8.44 5.91 8.13 14.64 14.79 0.00 6.82 23.19 0.00 27.34 17.30 10.28 4.80 8.69 18.22 8.63 11.87 42 E11a_E12a KnownJunction 1 14.08 23.94 53.99 37.46 26.74 63.15 12.37 84.69 55.41 74.76 49.96 7.05 76.94 63.34 44.87 56.14 27.49 71.55 3.29 30.87 47.51 56.64 82.80 43 I11 Intron 0 11.95 9.32 7.28 11.33 17.95 15.22 16.53 13.00 12.96 11.92 11.55 9.94 22.08 17.85 8.59 16.19 12.93 10.86 5.08 6.36 7.02 9.96 9.56 44 I11_AR1 ActiveIntronRegion 0 12.92 9.21 9.53 13.20 15.81 17.51 18.51 12.93 14.32 11.78 11.99 7.00 16.00 17.03 8.70 15.22 15.60 10.76 5.65 6.07 7.15 12.72 10.41 45 I11_SR1 SilentIntronRegion 0 10.01 9.62 2.63 7.52 22.56 10.56 12.53 13.24 10.22 12.31 10.72 16.18 34.95 19.71 8.42 18.35 7.47 11.15 3.93 7.01 6.79 4.28 7.85 46 E12_Aa NovelBoundary 1 13.71 6.31 8.07 11.89 4.07 14.48 4.46 14.01 15.77 21.79 19.27 0.00 54.05 21.37 4.45 32.13 9.26 23.26 14.12 9.08 6.24 2.88 8.45 47 ER12a ExonRegion 0 20.92 31.65 51.18 44.41 22.69 57.68 29.76 95.99 90.96 109.16 90.54 32.03 61.34 81.24 59.83 81.69 74.87 95.48 60.29 43.71 65.25 76.43 75.46 48 E12a_E13a KnownJunction 1 25.49 22.43 57.12 55.17 56.62 93.47 45.80 107.29 130.99 139.52 115.66 11.85 54.05 60.57 55.63 95.02 114.17 89.58 57.88 45.45 78.09 71.03 70.17 49 E13_Aa NovelBoundary 0 9.63 21.51 14.72 18.98 24.19 13.29 12.59 12.90 28.12 8.19 9.95 0.00 0.00 12.07 4.94 11.62 11.03 5.14 4.80 6.20 0.00 13.41 4.18 50 ER13a ExonRegion 1 18.70 16.17 66.60 58.79 32.14 54.32 36.97 97.03 127.48 132.81 92.29 55.63 146.99 92.37 68.68 105.42 81.77 115.80 50.28 50.28 61.95 83.82 87.88 51 E13a_E14a KnownJunction 1 39.64 18.02 99.14 69.69 27.84 63.03 53.53 123.30 149.77 144.71 71.02 42.76 167.68 136.62 90.49 171.49 70.87 154.95 114.45 45.57 48.25 149.16 125.74 52 ER14a ExonRegion 0 84.29 92.73 75.59 65.89 92.80 65.92 50.72 88.91 78.10 94.18 46.79 33.41 36.92 50.29 45.13 47.94 42.11 43.31 36.98 34.65 31.84 75.10 41.01