Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 U2AF1L4 Gene 0 138.82 26.03 26.64 37.31 27.58 24.70 20.47 32.22 31.29 40.13 51.42 23.71 29.83 69.47 106.50 89.09 49.53 33.41 35.34 34.58 32.51 27.36 29.78 2 392196 Transcript 0 30.31 13.66 9.20 12.19 18.56 9.07 16.20 11.99 9.18 12.02 11.87 11.93 13.38 18.61 22.90 27.58 17.42 17.96 21.31 15.06 11.87 9.16 10.41 3 292879 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 378975 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 412391 Transcript 0 52.75 1.59 1.06 0.00 4.54 6.30 1.89 1.47 2.07 5.56 20.21 15.18 6.79 30.47 35.17 27.19 18.45 2.01 5.01 8.91 6.96 4.15 4.85 6 ER1a ExonRegion 1 455.80 98.54 31.27 31.10 71.27 76.79 48.96 26.95 22.06 39.37 99.13 6.69 2.24 83.46 157.26 257.83 71.57 55.54 135.60 67.87 60.15 73.02 132.88 7 E1a_E2a KnownJunction 0 217.52 49.53 66.97 66.13 30.14 35.60 33.61 62.35 48.29 85.47 17.48 5.55 0.00 49.62 62.55 91.77 30.29 101.69 46.50 25.50 11.43 21.19 23.56 8 E2_Aa NovelBoundary 0 6.89 0.00 1.83 5.49 0.00 0.00 0.00 1.77 15.05 2.85 10.06 0.00 7.47 4.94 0.00 0.00 8.32 0.00 8.47 0.00 6.12 8.63 4.27 9 ER2a ExonRegion 0 57.34 17.61 20.91 25.76 8.03 11.15 8.05 33.12 16.73 37.08 16.61 11.71 5.81 17.39 27.50 39.35 21.16 28.43 13.14 11.94 13.05 8.67 6.97 10 E2_Da NovelBoundary 1 32.30 3.35 14.75 5.03 0.00 8.35 3.93 5.63 12.09 6.93 57.54 0.00 21.43 7.36 22.50 18.88 40.86 0.00 34.17 31.19 35.40 3.12 0.00 11 E2a_E3a KnownJunction 0 6.08 0.00 1.83 0.00 0.00 5.45 0.00 2.30 3.24 4.38 20.64 6.30 0.00 7.24 8.90 3.25 13.18 0.00 4.33 11.82 12.54 5.27 0.00 12 E2a_E5a KnownJunction 0 0.00 14.47 20.22 13.98 0.00 0.00 0.00 20.54 11.57 26.41 0.00 12.45 6.82 0.00 0.00 3.85 12.72 7.42 0.00 5.18 8.77 0.00 0.00 13 I2 Intron 1 62.15 5.33 11.06 12.59 8.11 13.40 6.75 16.33 13.95 14.60 32.50 6.63 11.71 50.28 58.01 63.92 26.39 21.76 27.66 17.89 25.21 23.26 27.52 14 I2_AR1 ActiveIntronRegion 1 62.49 5.35 11.12 12.66 8.16 13.47 6.79 16.42 14.03 14.68 32.68 6.67 11.76 50.55 58.32 64.26 26.53 21.88 27.81 17.99 25.34 23.39 27.67 15 E3_Aa NovelBoundary 0 181.74 15.72 52.72 54.14 24.11 13.51 10.25 59.56 44.94 52.25 72.39 26.11 19.32 121.37 92.34 112.88 107.99 35.82 66.54 59.89 56.90 37.11 64.71 16 ER3a ExonRegion 0 159.97 6.04 2.98 0.00 19.97 14.86 6.80 4.72 6.62 8.40 61.71 38.06 26.53 77.69 99.77 71.42 49.86 5.68 20.73 30.26 19.90 13.50 15.52 17 E3_Da NovelBoundary 0 180.55 12.10 14.99 19.05 35.74 12.38 18.24 15.07 31.05 14.42 44.22 31.51 19.64 82.76 64.78 110.23 71.62 15.13 9.13 26.14 30.52 19.66 22.96 18 E3a_E4a KnownJunction 0 49.19 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 5.13 6.63 12.00 0.00 11.83 10.14 19.23 4.68 2.57 0.00 0.00 0.00 0.00 0.00 19 E3a_E5a NovelJunction 0 311.68 2.50 35.07 43.52 73.68 17.89 28.88 38.98 25.72 30.65 48.54 0.00 0.00 38.79 62.18 90.23 35.34 39.17 30.02 14.00 8.77 19.96 18.69 20 I3 Intron 0 57.15 2.44 4.38 3.66 9.63 19.81 7.15 10.82 2.21 5.13 26.67 20.78 13.90 41.27 60.00 101.65 35.69 9.93 7.64 6.38 14.52 17.50 17.62 21 I3_AR1 ActiveIntronRegion 1 58.47 2.47 4.47 3.74 9.86 20.28 7.32 11.04 2.25 5.21 27.32 21.28 14.24 42.27 61.42 104.10 36.55 10.17 7.83 6.54 14.84 17.90 18.04 22 E4_Aa NovelBoundary 0 105.80 6.05 21.88 22.41 24.02 18.11 8.83 25.42 25.98 15.10 22.01 6.75 20.45 69.99 68.73 54.00 25.25 23.34 13.65 26.27 41.89 22.41 17.93 23 ER4a ExonRegion 0 38.56 1.91 0.47 0.00 2.73 8.40 2.65 0.31 0.47 5.14 7.11 13.25 7.41 36.71 47.64 30.38 14.99 1.81 0.00 2.47 2.38 2.00 8.75 24 E4_Da NovelBoundary 0 77.79 12.23 21.47 25.90 27.93 21.46 15.24 28.71 30.44 25.57 32.22 20.11 41.07 94.06 41.04 64.17 40.30 14.84 13.93 23.78 27.06 14.94 27.40 25 E4a_E5a KnownJunction 0 9.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.73 4.95 6.30 0.00 18.89 9.39 11.71 9.54 0.00 0.00 0.00 0.00 0.00 0.00 26 I4 Intron 0 115.76 3.01 0.00 0.00 3.96 10.84 0.98 0.00 0.00 0.00 21.43 18.64 12.03 26.55 47.18 26.36 19.52 0.00 2.35 6.29 16.29 10.78 10.85 27 I4_AR1 ActiveIntronRegion 0 119.06 3.10 0.00 0.00 4.07 11.11 1.01 0.00 0.00 0.00 22.04 19.19 12.25 27.32 48.46 27.15 20.05 0.00 2.42 6.48 16.71 11.07 11.13 28 E5_Aa NovelBoundary 0 152.18 24.67 26.76 55.17 4.33 45.20 6.23 39.27 32.18 36.72 40.22 54.02 42.04 72.11 121.15 100.66 34.78 16.83 0.00 28.12 28.54 33.43 11.69 29 ER5a ExonRegion 0 171.89 27.98 54.18 73.54 29.27 40.95 26.73 58.35 54.41 75.39 87.62 48.28 36.15 126.17 178.91 103.54 68.05 68.96 51.71 68.34 44.76 43.38 51.26 30 E5_Da NovelBoundary 0 60.01 9.80 16.62 21.31 23.60 2.50 16.21 19.72 11.98 19.13 20.79 26.11 6.01 25.13 45.24 37.77 29.45 15.92 8.56 14.96 17.61 10.10 31.50 31 E5a_E6a KnownJunction 0 158.99 32.56 44.82 90.60 35.31 33.16 52.38 64.20 57.32 89.88 60.91 24.76 12.82 136.50 138.45 133.55 91.54 68.73 30.21 83.22 44.85 19.47 42.34 32 I5 Intron 0 49.40 4.10 10.52 15.80 13.88 9.51 8.77 14.84 10.08 8.86 22.83 10.27 10.49 25.08 25.28 30.83 17.12 4.76 11.93 5.52 8.25 9.61 6.77 33 I5_AR1 ActiveIntronRegion 1 49.96 4.14 10.64 15.98 14.04 9.62 8.87 15.00 10.19 8.97 23.08 10.39 10.59 25.36 25.56 31.18 17.32 4.80 12.07 5.58 8.35 9.72 6.85 34 E6_Aa NovelBoundary 0 30.60 15.59 7.18 19.01 38.96 24.87 36.88 29.29 4.20 9.99 19.74 19.21 20.45 9.65 32.14 39.56 30.48 13.14 12.33 8.69 15.38 8.70 24.16 35 ER6a ExonRegion 0 121.98 33.29 60.74 100.69 35.28 34.26 36.62 57.74 68.18 83.95 89.93 37.43 44.62 142.41 192.32 145.67 85.35 46.66 34.70 74.02 59.65 46.63 35.47 36 E6_Da KnownBoundary 0 9.33 0.00 11.00 8.86 8.32 13.40 4.02 2.55 11.26 9.70 21.53 0.00 0.00 9.59 41.54 28.20 23.09 0.00 4.61 0.00 8.83 5.57 0.00 37 E6a_E7a KnownJunction 0 171.44 26.44 85.72 104.08 38.62 61.95 49.68 69.33 88.60 92.14 100.24 35.11 53.57 141.39 167.38 117.92 86.02 77.81 18.35 64.75 73.21 55.29 34.23 38 ER6b ExonRegion 0 8.83 2.84 7.08 8.91 4.57 9.58 4.13 2.98 7.88 13.15 11.83 1.94 3.15 19.35 25.86 15.37 12.46 3.50 0.00 3.30 11.47 4.56 1.67 39 E6b_E7a KnownJunction 0 19.34 12.04 5.94 9.92 10.78 5.17 6.98 2.18 7.58 15.63 4.69 6.30 0.00 30.14 24.85 11.96 9.44 9.37 0.00 2.94 5.00 13.47 4.35 40 ER7a ExonRegion 0 159.11 57.09 48.38 86.98 42.70 40.94 31.42 65.12 71.68 76.25 103.69 42.44 72.99 143.18 212.31 118.27 89.71 57.53 29.20 63.56 76.81 45.47 25.73 41 E7_Da KnownBoundary 0 31.34 17.43 6.50 16.48 23.17 11.07 7.77 25.55 10.04 13.27 37.11 37.81 8.28 12.60 13.35 12.30 8.88 35.61 30.40 11.12 8.71 2.82 4.35 42 E7a_E9a KnownJunction 0 195.59 37.69 18.78 32.10 4.16 24.53 7.29 25.42 43.66 41.23 52.12 11.85 32.95 81.82 115.33 129.97 77.70 17.08 17.88 35.86 63.51 22.53 39.95 43 ER7b ExonRegion 0 35.19 11.32 15.06 16.84 24.73 9.91 10.10 15.42 7.19 15.69 17.86 5.34 6.54 16.41 21.28 34.34 14.97 27.45 15.83 13.56 14.69 10.14 8.54 44 E7b_E8a KnownJunction 0 17.71 8.88 0.00 4.40 4.41 2.56 9.80 3.94 2.40 4.75 2.58 6.00 0.00 4.94 0.00 3.67 8.51 3.86 9.60 5.37 8.71 2.63 0.00 45 ER8a ExonRegion 1 38.03 20.78 12.53 15.33 26.54 14.76 28.69 16.60 17.96 15.60 15.16 24.44 33.60 34.47 47.42 44.71 28.78 22.56 38.50 26.24 12.22 14.69 22.68 46 E8_Da NovelBoundary 1 65.64 18.29 33.56 39.59 48.81 21.92 36.96 29.12 15.39 15.23 12.63 0.00 20.45 14.48 55.75 79.30 13.18 36.93 23.44 34.52 11.92 21.19 20.83 47 I8 Intron 0 41.63 19.47 19.39 14.14 15.38 7.34 11.98 18.38 18.58 19.34 20.52 8.87 14.45 24.96 32.05 33.11 18.96 24.77 18.30 13.70 10.36 11.61 8.69 48 I8_AR1 ActiveIntronRegion 0 41.76 19.53 19.45 14.19 15.43 7.36 12.02 18.44 18.64 19.40 20.59 8.90 14.50 25.05 32.15 33.22 19.03 24.86 18.36 13.75 10.38 11.64 8.72 49 E9_Aa NovelBoundary 0 35.64 3.29 48.05 15.35 17.23 17.21 4.20 28.22 20.54 25.04 21.79 6.30 6.82 19.31 22.75 47.25 28.24 22.47 22.31 17.90 0.00 19.90 4.10 50 ER9a ExonRegion 0 211.60 15.82 30.74 42.81 24.98 20.42 11.65 43.52 42.72 53.13 61.79 22.81 40.64 78.37 138.48 107.48 64.87 33.10 28.59 26.05 38.98 30.97 23.04