Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF599 Gene 0 3.39 5.06 3.65 4.17 6.37 7.50 6.94 5.88 6.45 10.10 1.40 1.43 1.54 2.31 1.65 1.10 1.49 6.84 5.75 5.82 6.09 3.82 6.27 2 392231 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 329285 Transcript 0 2.28 2.35 0.09 0.00 1.10 6.72 6.31 0.00 0.73 1.24 3.02 0.00 0.00 1.42 3.05 2.67 0.85 0.47 1.80 1.80 11.47 1.28 3.09 4 379196 Transcript 0 3.79 7.42 6.58 6.82 15.81 12.34 18.54 10.02 11.30 23.80 1.15 1.36 4.34 2.39 1.02 1.90 2.11 7.86 5.16 7.03 9.21 8.94 11.52 5 392229 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER2a ExonRegion 0 2.28 2.35 0.09 0.00 1.10 6.72 6.31 0.00 0.73 1.24 3.02 0.00 0.00 1.42 3.05 2.67 0.85 0.47 1.80 1.80 11.47 1.28 3.09 8 E2_Ab KnownBoundary 0 9.41 8.95 5.85 0.00 3.90 17.66 26.01 3.78 5.24 4.67 9.27 0.00 0.00 2.12 13.35 11.45 3.74 3.52 4.33 8.82 31.51 2.82 7.85 9 ER2b ExonRegion 0 5.36 3.42 7.03 3.97 7.00 11.23 8.54 10.59 7.75 18.97 5.86 1.27 0.00 5.07 5.31 2.24 4.96 15.03 15.30 12.40 22.78 5.45 17.44 10 E2a_E3a KnownJunction 0 0.00 15.66 9.61 4.79 20.37 24.13 39.22 12.12 16.32 18.10 0.00 0.00 0.00 9.18 14.46 0.00 0.00 7.21 0.00 14.38 16.80 5.69 15.45 11 ER3a ExonRegion 0 11.47 15.18 16.53 14.27 11.88 19.75 15.13 14.25 21.16 31.16 6.88 3.17 0.00 14.43 11.29 5.43 4.42 28.31 23.23 23.61 31.32 10.32 18.66 12 E3a_E4a KnownJunction 0 12.30 12.56 28.00 18.91 15.70 19.65 11.79 22.67 30.93 54.72 5.05 0.00 0.00 12.77 28.68 4.36 4.21 32.91 30.12 24.10 43.55 8.39 14.17 13 ER4a ExonRegion 0 8.40 21.69 22.13 14.42 14.86 11.67 14.49 22.11 23.40 39.37 5.28 4.24 0.00 12.20 10.06 2.14 6.36 35.34 16.66 22.16 35.14 21.73 27.78 14 E4_Da NovelBoundary 0 10.74 0.00 9.22 5.49 15.45 8.23 6.32 5.63 17.25 19.77 6.63 0.00 0.00 9.12 37.70 8.46 8.23 14.84 24.57 25.63 40.46 5.33 19.63 15 E4a_E5a KnownJunction 0 0.00 6.12 4.55 1.73 11.88 2.44 12.23 2.05 6.77 17.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.21 0.00 2.68 9.76 4.90 8.28 16 E4a_E6a KnownJunction 0 0.00 15.39 9.11 11.55 7.81 2.33 6.32 4.44 4.25 7.33 0.00 0.00 0.00 4.94 5.19 0.00 0.00 14.05 0.00 12.40 5.81 5.82 0.00 17 I4_AR1 ActiveIntronRegion 0 4.50 3.89 8.47 1.96 6.66 11.34 4.85 5.89 8.53 8.91 2.99 1.53 2.40 6.07 8.57 4.59 2.55 9.36 8.00 10.97 13.61 10.06 13.52 18 I4_SR2 SilentIntronRegion 0 3.52 3.27 2.98 5.49 6.02 8.72 8.62 9.08 8.44 18.67 2.58 3.96 4.59 4.21 0.89 2.11 5.41 12.23 6.10 17.48 4.61 6.19 8.23 19 I4_AR3 ActiveIntronRegion 0 2.23 3.82 4.16 3.64 2.81 7.15 7.32 5.43 5.95 10.26 2.39 1.87 10.88 2.91 0.00 4.29 12.59 4.34 2.40 7.90 5.34 6.19 2.09 20 E5_Aa NovelBoundary 0 10.30 5.72 3.49 8.86 12.48 10.79 16.16 10.10 11.60 11.15 2.63 5.40 6.33 0.00 0.00 7.43 4.39 2.57 4.80 25.89 10.87 2.69 12.72 21 ER5a ExonRegion 0 7.58 8.73 8.60 11.90 19.74 22.24 24.84 17.99 15.83 30.07 2.31 2.73 8.68 4.78 2.04 3.80 4.22 7.51 10.32 11.37 8.65 12.97 14.76 22 E5_Da NovelBoundary 0 13.78 2.70 2.75 7.96 7.56 21.12 22.83 8.46 12.79 18.94 0.00 0.00 6.33 4.47 0.00 0.00 4.11 2.57 0.00 9.01 0.00 2.45 8.02 23 I5_AR1 ActiveIntronRegion 0 4.69 10.52 4.05 12.76 26.70 23.83 36.70 5.71 5.44 19.57 2.14 5.27 2.65 1.98 3.34 1.10 2.44 2.38 4.71 7.08 2.44 10.78 5.43 24 ER6a ExonRegion 0 4.74 14.70 3.59 8.20 12.15 9.58 8.68 7.23 14.48 9.68 0.56 6.16 1.03 1.60 1.02 0.00 0.02 15.87 8.13 10.56 2.18 1.71 5.46 25 E6_Ab KnownBoundary 0 6.59 25.52 0.00 6.46 24.53 27.43 10.51 6.98 14.50 9.27 0.00 6.30 0.00 2.18 0.00 0.00 0.00 16.62 31.34 14.13 5.93 5.39 0.00 26 ER6b ExonRegion 0 3.04 7.75 0.66 2.98 6.02 8.82 3.67 2.33 5.66 4.61 0.00 0.81 0.58 0.94 0.36 0.00 0.00 9.36 7.46 4.90 2.04 1.49 3.63 27 E6_Da KnownBoundary 0 9.41 3.35 0.00 0.00 6.88 7.67 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 0.00 0.00 0.00 0.00 0.00 28 E6a_E6c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER6c ExonRegion 0 4.18 5.17 0.00 0.00 2.58 8.33 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 30 E6_Ac KnownBoundary 0 6.89 0.00 0.00 3.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER6d ExonRegion 0 1.03 0.49 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 32 E6_Db KnownBoundary 0 7.04 22.23 15.20 25.34 37.27 10.85 8.61 28.92 20.14 23.37 20.74 7.65 0.00 3.00 5.81 37.00 13.56 50.86 18.26 55.48 18.22 20.64 32.52 33 ER6e ExonRegion 0 0.19 0.09 0.17 0.00 0.12 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 IG50_SR3 SilentIntergenicRegion 0 3.11 15.63 5.49 13.62 11.71 11.36 7.73 10.76 11.33 16.25 0.47 1.18 0.98 1.32 0.53 1.09 0.91 5.20 3.67 11.72 0.60 1.05 1.96 35 IG50_AR2 ActiveIntergenicRegion 0 2.35 17.88 4.43 9.61 12.90 17.31 10.64 11.26 12.68 16.11 0.43 2.74 1.00 0.64 1.23 0.33 0.00 11.75 6.38 16.92 2.47 3.13 3.59 36 IG50_SR2 SilentIntergenicRegion 0 1.06 14.74 0.46 7.60 6.69 4.58 9.27 10.92 8.74 16.65 1.93 2.67 0.97 1.00 0.51 0.73 0.00 4.80 3.19 11.15 0.55 3.13 0.73