Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C19orf12 Gene 0 62.54 109.67 61.65 68.91 73.71 101.11 65.24 111.82 140.23 146.67 66.34 34.80 28.24 62.19 56.63 51.73 43.12 99.77 48.18 79.34 60.69 75.58 61.27 2 392275 Transcript 0 0.09 2.29 1.64 0.39 0.10 0.64 3.72 1.44 2.54 2.21 0.60 0.00 0.00 1.38 0.86 2.42 4.49 1.26 2.05 0.31 2.16 2.65 1.30 3 323670 Transcript 0 42.92 104.22 35.89 62.61 60.40 83.00 49.94 76.29 91.98 88.81 22.88 12.86 16.27 28.25 26.88 19.33 20.50 59.80 31.99 58.30 30.71 38.33 36.03 4 342680 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 392276 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.69 1.26 2.58 0.00 0.00 0.00 5.81 4.02 4.21 0.00 0.00 0.00 0.00 0.00 0.00 6 392278 Transcript 0 0.00 0.00 0.00 0.00 3.48 2.78 0.00 0.00 5.27 3.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.05 0.00 2.43 8.40 0.00 0.00 7 ER1a ExonRegion 0 0.23 0.88 0.11 0.51 0.09 0.55 1.14 0.00 1.29 0.89 0.66 0.00 0.00 1.36 0.17 1.88 1.04 0.32 2.28 0.22 1.90 0.79 1.14 8 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 E1_Ac KnownBoundary 0 7.41 3.22 0.00 0.00 3.65 13.57 10.82 0.00 0.00 5.37 15.42 0.00 0.00 16.60 0.00 25.55 4.77 9.24 3.67 6.20 12.17 15.55 24.33 10 ER1b ExonRegion 1 4.94 6.10 1.23 0.00 6.84 15.89 9.27 0.00 3.16 3.57 19.33 0.00 0.00 23.46 3.55 19.48 4.40 11.50 9.20 5.67 12.00 10.88 26.43 11 E1_Ad KnownBoundary 0 7.19 6.64 9.37 1.83 39.47 131.97 44.69 2.09 17.19 19.56 30.17 0.00 0.00 19.13 18.67 45.46 36.93 46.05 13.18 24.29 25.27 20.02 70.17 12 ER1c ExonRegion 1 6.61 8.13 3.98 0.00 18.62 66.17 24.22 0.72 6.79 12.23 31.25 0.00 0.00 24.97 10.28 34.06 19.53 22.17 10.22 17.73 26.44 18.66 44.91 13 ER1d ExonRegion 0 7.61 16.01 11.62 3.53 22.69 71.42 26.29 15.72 21.07 43.86 18.38 0.09 1.86 16.66 13.24 18.02 21.18 61.11 16.26 21.70 24.81 9.29 25.33 14 E1_Da KnownBoundary 0 0.00 0.00 1.74 0.00 0.00 0.00 3.97 3.78 1.19 2.82 2.16 0.00 0.00 7.36 11.00 0.00 0.00 6.72 4.80 2.75 0.00 0.00 3.84 15 E1a_E2a KnownJunction 0 0.00 6.12 2.87 3.43 0.00 17.89 1.81 7.60 16.58 20.52 11.58 10.50 0.00 6.65 0.00 0.00 8.13 28.35 0.00 5.75 8.59 0.00 7.09 16 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.69 1.26 2.58 0.00 0.00 0.00 5.81 4.02 4.21 0.00 0.00 0.00 0.00 0.00 0.00 17 ER1e ExonRegion 0 0.03 0.00 4.81 0.67 0.19 1.38 1.50 4.31 2.15 1.08 1.15 0.00 0.00 2.78 2.40 5.38 12.44 3.45 3.88 0.71 4.57 1.54 2.77 18 E1_Ae KnownBoundary 0 0.00 0.00 9.43 4.13 0.00 0.00 0.00 1.56 5.41 4.14 0.00 0.00 0.00 9.36 0.00 6.84 9.26 4.56 8.00 7.73 8.15 0.00 10.16 19 ER1f ExonRegion 0 1.43 1.58 3.00 0.38 5.32 5.27 2.13 4.52 7.11 5.63 1.98 0.00 0.19 6.26 2.92 8.76 2.13 18.44 3.12 4.04 8.58 2.82 5.76 20 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 3.48 2.78 0.00 0.00 5.27 3.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.05 0.00 2.43 8.40 0.00 0.00 21 E1b_E3a KnownJunction 0 0.00 5.99 0.00 0.00 0.00 0.00 8.52 0.00 4.20 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.63 0.00 22 I1 Intron 0 14.35 19.18 14.50 16.27 12.45 10.91 11.78 17.00 18.79 17.21 9.70 7.28 8.76 17.08 10.71 14.54 10.57 36.87 10.38 19.77 11.99 9.11 14.91 23 I1_SR1 SilentIntronRegion 0 15.20 20.53 14.38 16.30 13.07 11.12 12.80 17.33 18.36 16.56 9.64 8.09 9.02 17.48 11.20 15.12 10.65 34.36 10.93 19.63 11.62 9.25 15.48 24 I1_AR1 ActiveIntronRegion 0 9.32 11.09 15.20 16.10 8.75 9.66 5.67 15.02 21.40 21.13 10.08 2.41 7.22 14.73 7.80 11.10 10.09 52.06 7.08 20.67 14.24 8.24 11.49 25 ER2a ExonRegion 0 4.41 15.98 19.66 14.15 10.77 10.80 9.07 39.48 47.65 63.68 47.66 8.48 6.57 50.34 32.55 23.90 31.24 65.73 16.17 48.70 46.11 29.95 28.04 26 E2_Da NovelBoundary 0 10.74 17.76 13.48 20.21 12.73 0.00 10.73 15.20 12.82 24.15 2.68 0.00 0.00 12.07 5.19 3.25 8.98 28.11 8.66 8.56 8.53 0.00 8.02 27 E2a_E3a KnownJunction 0 13.04 2.70 21.41 10.26 15.20 7.38 0.00 17.99 42.51 32.53 41.91 6.30 6.17 14.19 14.09 14.61 20.48 60.15 13.08 29.59 34.35 14.14 16.90 28 I2 Intron 0 13.46 45.30 18.41 19.96 19.77 22.12 18.16 25.92 25.81 33.31 16.16 11.25 11.85 22.62 13.26 18.53 12.71 47.29 12.15 28.63 14.50 13.60 19.22 29 I2_SR1 SilentIntronRegion 0 15.21 52.55 18.02 20.16 20.46 20.02 16.94 22.56 24.58 29.51 13.53 10.01 10.74 18.60 11.49 17.14 12.82 46.35 11.39 29.59 13.79 13.04 18.29 30 I2_AR2 ActiveIntronRegion 0 10.88 37.27 16.47 17.72 20.50 21.16 17.85 30.97 30.52 36.79 20.24 13.93 16.58 32.20 17.80 17.58 15.36 51.21 12.66 25.99 16.23 14.34 19.65 31 I2_SR3 SilentIntronRegion 0 7.46 23.42 12.02 14.32 18.24 10.77 16.80 19.98 11.68 19.68 11.36 7.60 11.80 21.11 8.50 20.26 9.31 36.49 11.23 16.00 11.39 7.83 20.71 32 I2_AR4 ActiveIntronRegion 1 12.93 37.54 26.43 25.36 16.70 38.97 24.61 36.95 32.76 52.66 24.64 15.02 10.19 27.75 17.36 24.87 10.52 52.20 15.23 35.32 16.98 18.26 21.84 33 E3_Aa NovelBoundary 0 82.01 52.89 38.53 24.71 7.39 34.13 20.67 22.67 47.60 55.15 11.85 6.30 25.16 19.90 6.30 16.49 9.54 72.58 12.52 49.60 20.14 11.70 33.97 34 ER3a ExonRegion 0 57.83 52.49 59.67 41.91 34.25 111.85 42.68 89.32 116.77 124.62 78.07 18.04 13.66 78.74 57.36 63.92 65.18 149.27 38.20 87.45 102.59 64.54 50.16 35 E3_Da KnownBoundary 1 95.35 68.94 73.06 51.91 35.91 104.83 52.82 112.42 135.53 125.82 102.97 18.61 33.11 97.18 52.29 93.99 64.42 169.63 73.41 95.75 117.93 76.17 77.77 36 E3a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 ER3b ExonRegion 1 71.70 51.13 65.60 22.85 13.47 57.31 28.80 80.59 120.84 144.26 75.24 11.29 16.16 77.81 41.86 76.64 45.51 151.52 63.02 77.55 97.51 56.74 65.03 38 E3_Ab KnownBoundary 1 57.94 53.02 74.48 28.30 8.23 32.65 19.61 53.31 129.19 147.28 39.69 6.30 0.00 68.57 13.35 85.87 54.32 171.12 31.25 68.97 83.71 51.07 82.46 39 ER3c ExonRegion 1 48.57 56.45 76.01 36.80 6.80 43.47 20.07 89.09 138.37 164.75 76.32 11.70 16.99 96.57 48.85 94.14 66.82 126.45 57.77 77.06 99.88 65.55 89.21 40 E3_Db KnownBoundary 1 52.97 83.60 83.00 75.15 17.91 66.89 25.39 118.99 165.13 167.16 90.18 12.30 32.30 127.79 78.50 116.98 81.44 146.50 67.11 113.01 113.79 80.34 84.00 41 ER3d ExonRegion 1 39.96 75.05 91.36 72.89 48.16 97.88 48.83 146.04 223.16 226.51 136.71 22.16 21.97 135.58 87.88 132.13 101.24 251.22 99.26 109.63 162.46 131.47 131.56 42 E3_Dc KnownBoundary 0 51.86 54.79 116.52 119.27 34.97 120.73 54.28 189.27 339.03 275.76 119.08 49.82 32.95 127.91 96.42 102.96 113.60 458.14 63.63 95.17 142.58 103.85 123.35 43 ER3e ExonRegion 1 96.85 117.95 105.80 99.18 75.48 164.04 78.14 159.35 278.02 265.23 144.38 40.85 22.47 112.30 112.12 252.58 117.66 420.12 138.26 137.41 180.46 279.59 200.12 44 E3_Dd KnownBoundary 1 79.79 146.75 118.12 85.34 57.56 109.54 75.78 152.67 225.40 245.92 100.66 30.46 12.82 136.80 80.10 134.75 77.79 216.14 92.33 127.20 157.35 74.83 118.91 45 ER3f ExonRegion 0 131.14 200.55 117.82 120.36 149.04 178.12 131.05 212.06 252.22 271.95 128.55 91.55 65.20 107.06 113.33 80.82 67.42 125.88 74.40 133.54 82.73 140.67 96.05 46 E3_De KnownBoundary 0 127.21 231.08 41.07 79.41 143.80 103.01 87.09 108.81 121.12 138.39 40.12 29.86 27.27 46.38 62.67 34.01 34.50 50.82 51.58 85.84 26.26 66.44 92.45 47 ER3g ExonRegion 0 42.92 104.22 35.89 62.61 60.40 83.00 49.94 76.29 91.98 88.81 22.88 12.86 16.27 28.25 26.88 19.33 20.50 59.80 31.99 58.30 30.71 38.33 36.03