Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KIAA1683 Gene 0 19.06 12.46 39.36 34.64 64.25 76.89 17.26 120.28 203.36 133.68 0.39 1.22 0.51 3.04 1.57 5.89 2.26 88.12 47.96 48.71 22.48 8.38 13.06 2 358422 Transcript 0 0.00 0.00 0.00 0.00 13.58 9.00 0.88 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.41 6.30 1.24 1.19 0.00 3 359737 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 427634 Transcript 0 0.69 0.41 2.83 2.63 13.94 4.01 1.79 7.61 29.86 15.56 0.00 0.00 0.00 3.59 0.00 0.00 0.00 11.84 2.07 10.93 4.16 0.00 4.32 5 411671 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 392413 Transcript 0 4.12 2.76 6.50 4.90 8.18 16.10 4.11 29.24 55.54 37.17 0.26 0.53 0.00 1.07 0.70 2.57 0.99 29.74 13.83 19.41 6.57 2.37 4.50 7 392412 Transcript 0 9.33 7.78 18.67 17.59 43.19 51.72 10.96 58.78 93.54 68.73 0.10 1.24 0.45 1.53 0.64 3.61 1.16 51.46 33.49 30.36 14.73 5.04 9.01 8 IG7 Intergenic 0 15.30 13.00 34.89 19.03 27.96 16.32 13.93 53.20 115.05 46.44 1.28 1.60 0.81 1.50 5.67 5.34 5.44 32.28 23.27 26.79 27.47 4.46 57.99 9 IG7_AR1 ActiveIntergenicRegion 0 20.51 15.21 31.66 20.77 27.94 14.04 15.31 46.86 105.27 39.74 2.53 4.73 1.79 1.23 8.36 6.84 10.60 22.66 18.46 27.73 42.60 5.98 58.12 10 IG7_SR1 SilentIntergenicRegion 0 13.98 12.45 35.77 18.60 28.00 16.93 13.60 54.90 117.71 48.23 0.96 0.79 0.56 1.57 4.99 4.95 4.11 34.81 24.53 26.57 23.59 4.07 58.02 11 ER1a ExonRegion 0 1.01 4.85 10.43 5.03 13.18 11.48 5.83 7.38 29.59 14.81 0.00 1.70 0.00 0.61 0.98 1.42 0.00 7.08 6.43 14.28 8.40 0.00 14.16 12 E1_Da NovelBoundary 0 3.04 8.95 8.25 3.80 26.49 21.58 22.21 21.48 70.63 24.39 0.00 0.00 0.00 0.00 0.00 3.42 9.16 23.26 0.00 17.19 11.31 0.00 3.50 13 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 I1 Intron 0 13.32 13.68 21.05 12.26 41.06 13.84 16.33 41.47 69.91 37.30 0.24 0.45 0.49 0.77 0.77 4.87 0.21 18.95 19.23 17.53 9.56 1.57 15.89 15 I1_SR1 SilentIntronRegion 0 9.80 12.43 22.24 12.11 42.10 12.85 15.81 42.83 71.91 38.36 0.29 0.53 0.00 0.91 0.76 5.77 0.25 20.97 21.85 18.72 11.17 1.55 17.31 16 I1_SR2 SilentIntronRegion 0 34.47 21.79 15.65 13.93 37.84 20.43 20.43 36.43 63.11 33.69 0.00 0.00 3.31 0.00 0.88 0.00 0.00 8.66 5.46 11.85 0.94 1.79 8.81 17 E2_Aa NovelBoundary 0 44.90 15.13 20.76 26.87 82.60 39.30 67.08 105.19 154.02 88.83 0.00 0.00 0.00 0.00 0.00 3.16 0.00 11.69 7.15 41.23 13.90 2.88 16.05 18 ER2a ExonRegion 0 31.66 5.95 18.33 23.95 91.92 36.68 19.21 62.58 104.38 56.54 0.00 0.00 0.00 3.12 0.86 0.00 0.00 26.96 33.94 31.91 6.48 7.84 17.43 19 E2_Da NovelBoundary 0 20.82 5.46 23.33 43.72 78.27 34.53 19.87 120.06 193.43 85.45 0.00 0.00 0.00 0.00 4.94 11.96 0.00 88.46 47.15 99.46 11.55 5.14 52.33 20 E2a_E3a KnownJunction 0 0.00 0.00 0.00 2.00 3.74 0.00 0.00 0.00 10.04 7.12 0.00 0.00 0.00 4.83 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 4.01 21 E2a_E3b KnownJunction 0 6.74 0.00 0.00 1.56 7.81 2.33 0.00 12.40 10.71 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.90 0.00 0.00 0.00 0.00 0.00 22 I2 Intron 0 11.95 5.74 14.58 11.18 25.05 11.23 8.93 44.67 74.75 35.88 0.13 1.23 0.59 0.65 1.44 1.43 0.00 18.59 22.36 29.43 7.88 3.73 13.34 23 I2_SR1 SilentIntronRegion 0 14.66 5.67 12.12 11.34 30.39 12.35 8.79 42.13 70.85 34.21 0.19 1.71 0.82 0.78 1.35 1.72 0.00 13.79 21.15 27.64 6.36 3.61 13.00 24 I2_AR1 ActiveIntronRegion 0 1.59 0.00 5.51 2.04 0.67 0.46 3.64 10.37 21.00 13.19 0.00 0.00 0.00 0.00 3.63 0.00 0.00 0.92 14.33 19.68 3.31 1.56 11.75 25 I2_SR2 SilentIntronRegion 0 4.36 6.84 24.18 11.51 12.87 11.38 10.36 57.53 93.66 41.42 0.00 0.00 0.00 0.59 2.95 1.31 0.00 27.06 31.39 35.66 8.97 3.61 11.14 26 I2_AR2 ActiveIntronRegion 0 6.37 5.07 17.40 10.50 10.79 5.11 8.33 45.56 77.37 40.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.29 18.68 33.11 15.95 4.78 18.61 27 E3_Aa NovelBoundary 0 7.26 6.58 39.21 29.97 39.81 10.45 16.65 110.08 135.56 70.24 0.00 0.00 0.00 2.47 5.07 0.00 0.00 74.24 56.28 53.63 11.24 3.06 64.96 28 ER3a ExonRegion 0 1.38 0.81 5.67 3.27 24.15 8.02 3.57 15.21 49.68 24.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 21.16 4.14 21.86 8.32 0.00 4.63 29 E3_Ab KnownBoundary 0 3.78 3.03 12.51 9.86 68.34 18.57 12.81 41.20 123.90 46.52 0.00 0.00 0.00 2.41 0.00 0.00 0.00 45.31 9.32 42.57 10.69 0.00 4.35 30 ER3b ExonRegion 0 19.64 9.62 27.65 24.34 43.23 44.48 18.90 111.55 197.03 109.07 0.36 0.66 0.72 4.92 0.61 7.36 1.91 67.84 31.74 54.30 22.83 3.67 13.56 31 E3_Da KnownBoundary 0 7.19 12.17 33.12 42.12 53.48 77.34 20.98 197.24 319.67 173.31 0.00 0.00 0.00 0.00 0.00 12.30 4.30 121.04 78.50 74.91 29.04 3.12 15.02 32 E3a_E3c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 ER3c ExonRegion 0 23.72 13.59 35.48 32.76 55.55 63.74 20.43 189.11 354.85 200.22 0.41 3.95 1.24 6.27 2.50 5.68 1.99 106.40 82.97 89.65 31.15 9.88 20.56 34 E3_Db KnownBoundary 0 6.00 5.06 26.67 20.88 71.39 64.51 27.25 192.31 323.55 173.80 0.00 6.00 0.00 6.53 9.39 0.00 0.00 100.52 86.03 51.84 10.87 17.82 8.19 35 E3b_E6c KnownJunction 0 0.00 0.00 0.00 0.00 27.16 18.00 1.77 0.00 2.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.82 12.59 2.47 2.39 0.00 36 ER3d ExonRegion 0 16.74 9.61 25.95 22.53 36.51 58.72 15.72 117.05 234.45 136.54 0.00 1.39 1.02 2.06 2.53 7.53 3.06 85.02 50.27 54.03 19.77 8.91 13.59 37 E3_Ac KnownBoundary 0 61.27 31.64 29.09 34.73 79.97 96.59 21.64 107.29 256.42 132.89 0.00 0.00 6.49 0.00 0.00 8.46 14.31 113.71 80.19 67.24 28.17 12.12 24.24 38 ER3e ExonRegion 0 9.58 7.32 19.66 17.95 26.28 41.43 8.04 75.41 175.42 101.94 0.48 0.55 1.74 2.36 1.25 4.95 3.00 69.21 45.20 40.37 19.20 6.70 11.08 39 E3_Dc KnownBoundary 0 10.22 0.00 10.70 7.66 4.33 31.46 1.90 64.20 151.73 57.24 2.58 0.00 0.00 0.00 0.00 0.00 4.39 46.22 33.79 52.09 16.74 6.25 7.94 40 E3c_E6b KnownJunction 0 0.00 0.00 1.83 0.00 0.00 2.90 0.00 4.15 20.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 ER3f ExonRegion 0 5.42 5.52 12.99 9.80 16.37 29.35 8.22 54.20 109.29 74.34 0.53 1.06 0.00 2.14 1.41 5.13 1.99 57.36 27.66 36.27 13.15 4.74 8.99 42 E3_Dd NovelBoundary 0 2.82 0.00 23.68 13.92 25.30 34.70 6.09 87.73 117.30 109.38 2.32 0.00 0.00 0.00 0.00 4.36 0.00 52.23 37.74 35.09 11.68 3.12 15.45 43 E3d_E6b KnownJunction 0 2.82 0.00 0.00 0.00 0.00 2.84 0.00 4.27 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 2.56 0.00 0.00 0.00 44 I3 Intron 0 8.60 9.84 19.59 17.69 42.46 64.87 15.02 91.36 166.57 120.87 0.00 0.54 0.00 3.32 1.48 4.05 1.64 77.40 49.18 52.31 21.65 9.82 12.11 45 I3_SR1 SilentIntronRegion 0 7.19 8.02 16.76 14.75 34.86 50.63 12.67 79.28 149.16 106.24 0.00 0.47 0.00 3.31 0.97 3.69 1.34 71.79 41.83 48.05 18.62 9.41 11.36 46 I3_AR1 ActiveIntronRegion 0 13.58 15.19 31.49 29.21 65.18 104.98 23.03 145.81 248.84 187.81 0.00 0.96 0.00 3.95 2.73 4.29 2.64 107.13 74.48 70.05 32.01 11.97 15.49 47 I3_SR2 SilentIntronRegion 0 6.50 9.77 10.75 10.63 41.46 68.96 12.30 44.66 90.12 61.93 0.00 0.00 0.00 1.84 2.09 6.16 1.29 45.04 40.07 39.60 18.03 7.50 9.25 48 E4_Aa NovelBoundary 0 77.79 25.19 79.83 107.05 193.89 263.03 52.60 460.85 690.76 534.82 0.00 0.00 0.00 0.00 4.45 23.67 0.00 378.76 94.69 121.76 26.19 7.96 34.91 49 ER4a ExonRegion 0 9.09 1.09 7.65 4.38 31.55 46.44 12.04 34.04 58.87 36.99 0.00 3.83 2.07 2.15 0.00 3.19 0.00 46.60 46.17 38.39 23.59 2.28 12.33 50 E4_Da NovelBoundary 0 26.30 38.48 33.56 37.86 140.07 112.83 16.30 228.45 353.24 286.83 0.00 0.00 0.00 0.00 0.00 22.22 0.00 210.38 118.31 95.62 33.98 8.70 47.55 51 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.13 0.00 0.00 0.00 52 E5_Aa NovelBoundary 0 31.71 15.98 29.60 42.32 59.93 112.38 22.61 135.30 253.82 215.67 0.00 12.60 0.00 5.00 0.00 0.00 0.00 172.61 80.85 79.26 39.17 10.78 11.27 53 ER5a ExonRegion 0 10.94 18.52 23.49 27.14 73.98 84.98 17.83 98.40 164.06 127.33 0.00 0.93 0.00 2.46 1.50 7.22 3.01 86.84 56.88 56.76 21.41 10.10 17.11 54 E5_Da NovelBoundary 0 48.75 36.51 43.46 47.35 139.05 139.52 38.69 174.61 320.25 212.24 0.00 6.30 0.00 2.41 5.07 3.59 8.79 182.81 147.30 97.99 49.17 16.59 19.63 55 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 E6_Aa NovelBoundary 0 16.60 24.40 29.21 40.22 58.15 89.83 19.39 161.75 245.89 223.22 0.00 0.00 0.00 2.24 0.00 11.62 0.00 171.62 57.51 50.37 33.42 16.59 14.43 57 ER6a ExonRegion 0 26.64 19.26 62.23 56.45 110.41 127.17 24.94 161.48 243.58 179.35 0.49 1.43 0.15 3.02 1.70 7.62 2.78 123.84 64.38 53.51 28.65 12.80 15.60 58 E6_Ab KnownBoundary 0 27.04 14.41 47.69 47.85 81.66 81.49 35.24 119.53 158.27 117.66 0.00 0.00 0.00 2.47 0.00 3.16 0.00 78.60 17.98 14.38 8.09 2.45 11.10 59 ER6b ExonRegion 0 19.54 9.88 42.47 30.30 50.52 68.30 10.89 96.67 156.66 102.99 0.54 0.34 0.00 1.99 0.77 1.29 0.72 66.26 19.38 32.83 16.72 4.48 5.30 60 E6_Ac KnownBoundary 0 20.30 3.03 55.53 42.69 43.89 88.93 6.45 137.76 176.65 113.52 0.00 0.00 0.00 4.71 9.64 4.19 7.57 107.41 4.80 30.55 16.56 3.00 7.51 61 ER6c ExonRegion 0 10.02 6.69 45.33 33.54 29.73 50.15 5.82 95.40 136.39 95.70 0.70 0.03 0.00 2.14 3.25 2.86 2.80 62.15 23.66 26.24 15.39 4.27 3.99 62 E6_Da KnownBoundary 0 13.85 15.06 64.46 39.09 19.69 42.87 4.24 104.74 177.20 127.78 0.00 0.00 0.00 2.47 5.32 6.84 0.00 54.10 39.62 20.07 13.53 0.00 3.16 63 E6a_E6d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64 ER6d ExonRegion 0 11.38 3.96 30.46 27.84 23.79 33.56 4.68 77.32 112.33 74.23 0.00 0.00 0.00 1.47 2.62 0.29 0.00 29.98 19.28 19.26 15.02 2.67 7.80 65 E6_Ad KnownBoundary 0 13.19 5.72 27.53 17.25 18.51 14.59 10.38 66.91 54.92 52.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.92 4.33 11.95 11.49 2.76 3.93 66 ER6e ExonRegion 0 8.84 2.42 22.72 17.50 28.49 29.10 4.13 50.61 65.46 31.47 0.00 0.00 2.48 3.13 0.00 1.40 0.00 18.02 14.90 4.57 7.58 6.43 0.60 67 ER6f ExonRegion 0 6.45 1.85 10.64 11.27 22.26 21.01 1.08 20.03 32.39 6.36 0.00 0.00 1.28 3.40 0.00 2.57 0.00 16.21 15.93 3.09 3.21 2.84 0.00 68 IG6_AR5 ActiveIntergenicRegion 0 0.00 1.69 3.68 8.18 5.35 0.00 0.00 3.46 14.82 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.24 6.37 2.13 0.00 12.50 5.87 69 IG6_AR4 ActiveIntergenicRegion 0 1.90 2.03 4.53 11.72 3.08 0.00 0.00 3.46 15.87 4.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.54 6.37 2.02 0.00 10.11 5.87 70 IG6_AR2 ActiveIntergenicRegion 0 0.00 3.02 5.46 17.64 3.10 0.25 0.57 6.74 6.94 16.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.12 4.09 5.36 0.47 0.89 1.68