Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LSR Gene 0 18.83 0.91 5.40 4.96 10.67 3.21 5.55 15.12 7.79 4.32 127.64 9.31 37.48 92.69 149.34 1.66 101.04 1.56 2.57 2.95 7.00 9.85 8.36 2 354900 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 361790 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 360798 Transcript 0 7.41 0.00 0.00 0.00 7.81 0.00 1.90 7.31 3.94 0.00 32.11 0.00 13.64 12.18 32.26 0.00 44.13 0.00 0.00 0.00 0.00 0.00 0.00 5 443983 Transcript 0 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 1.79 0.00 10.00 0.00 0.00 11.24 19.28 0.00 25.43 0.00 0.00 0.00 0.00 3.12 0.00 6 347609 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 427250 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.84 0.00 0.00 2.47 0.00 0.00 9.54 0.00 0.00 0.00 0.00 0.00 0.00 8 ER1a ExonRegion 0 5.78 0.00 0.00 0.00 3.51 1.67 0.72 0.25 1.25 0.00 18.34 0.00 1.55 9.95 15.88 0.00 10.34 0.00 0.00 0.48 0.00 1.23 1.34 9 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 3.74 0.00 2.21 2.30 1.33 0.00 32.85 0.00 6.33 14.42 14.09 0.00 17.58 0.00 0.00 0.00 0.00 3.12 0.00 10 ER1b ExonRegion 1 0.40 0.00 0.00 0.00 1.61 0.00 0.33 3.93 4.19 0.71 47.35 0.00 2.63 33.66 47.32 0.00 23.32 0.00 0.00 1.12 0.00 3.29 2.10 11 E1_Ac KnownBoundary 0 12.37 0.00 0.00 1.66 3.40 2.10 0.00 7.15 2.86 0.00 39.17 0.00 6.66 50.56 108.91 0.00 36.00 0.00 0.00 2.88 0.00 5.82 3.93 12 E1_Da KnownBoundary 1 37.12 0.00 0.00 0.00 10.44 5.05 8.35 13.06 3.18 0.00 102.66 0.00 0.00 86.82 297.92 0.00 64.70 0.00 0.00 0.00 0.00 7.72 7.43 13 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER1c ExonRegion 1 13.23 0.00 0.00 0.00 4.11 3.01 3.74 10.62 3.71 0.00 66.55 0.00 4.19 74.59 195.73 0.00 45.27 0.00 0.00 2.20 0.00 4.76 3.04 15 ER1d ExonRegion 1 10.04 0.00 0.00 1.81 5.96 4.72 3.01 7.75 3.66 0.75 84.45 3.04 5.34 59.69 103.50 0.00 76.84 0.00 0.00 0.17 0.00 4.11 2.53 16 E1b_E2a KnownJunction 0 6.45 0.00 0.00 3.66 7.56 0.00 6.71 9.12 5.90 1.10 64.86 6.30 19.15 41.67 49.08 0.00 72.18 0.00 0.00 0.00 0.00 3.12 0.00 17 E2_Ab NovelBoundary 0 2.96 0.00 0.00 2.73 0.00 0.00 0.00 3.53 3.79 0.00 53.07 0.00 19.80 18.25 36.96 0.00 46.19 0.00 0.00 0.00 0.00 2.69 0.00 18 ER2a ExonRegion 0 2.31 0.00 0.00 2.73 4.38 0.00 2.65 5.19 4.49 1.04 78.90 4.33 14.07 44.00 62.25 0.00 81.32 0.00 0.00 0.00 0.00 5.11 0.00 19 ER2b ExonRegion 0 15.32 0.00 0.93 2.74 7.21 1.14 3.44 20.06 8.76 1.86 171.35 7.10 31.07 122.12 189.35 0.10 114.54 0.00 0.00 0.32 0.00 8.01 4.57 20 E2a_E3a KnownJunction 0 20.08 0.00 3.31 1.30 21.05 0.00 8.04 22.02 9.40 4.08 217.11 6.30 67.69 195.89 301.50 3.59 171.86 0.00 0.00 0.00 0.00 8.82 8.02 21 E2a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.84 0.00 0.00 2.47 0.00 0.00 9.54 0.00 0.00 0.00 0.00 0.00 0.00 22 ER3a ExonRegion 0 11.78 0.00 0.82 1.18 19.44 2.31 4.08 22.97 7.12 1.36 266.32 12.05 79.65 168.66 236.04 0.99 200.06 0.00 0.05 0.02 0.94 6.86 2.25 23 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 1.79 0.00 27.59 0.00 13.31 16.95 22.37 0.00 16.83 0.00 0.00 0.00 0.00 0.00 0.00 24 E3a_E5a KnownJunction 0 17.19 0.00 1.80 3.26 7.64 0.00 0.00 25.47 6.71 0.00 172.36 18.91 107.30 144.21 261.82 0.00 131.28 0.00 0.00 0.00 0.00 8.45 0.00 25 E3a_E6a KnownJunction 0 7.41 0.00 0.00 0.00 7.81 0.00 1.90 7.31 3.94 0.00 32.11 0.00 13.64 12.18 32.26 0.00 44.13 0.00 0.00 0.00 0.00 0.00 0.00 26 ER4a ExonRegion 0 0.22 0.00 0.00 0.84 0.99 0.00 0.00 0.39 1.67 0.00 21.74 3.11 26.74 17.32 35.48 0.00 36.19 0.00 0.00 0.00 0.00 5.04 0.00 27 E4_Da NovelBoundary 0 12.67 0.00 7.84 4.00 3.23 0.00 8.13 6.28 1.79 2.47 5.37 0.00 0.00 10.65 0.00 0.00 0.00 5.14 0.00 3.20 0.00 0.00 0.00 28 E4a_E5a KnownJunction 1 0.00 0.00 0.00 2.06 0.00 0.00 0.00 1.81 2.63 0.00 24.01 0.00 64.44 27.67 22.25 0.00 26.46 0.00 0.00 0.00 0.00 8.27 0.00 29 E5_Aa NovelBoundary 0 10.82 0.00 7.10 0.00 0.00 5.79 8.48 6.57 6.54 8.73 6.63 0.00 0.00 0.00 0.00 4.36 3.46 0.00 0.00 5.31 0.00 0.00 0.00 30 ER5a ExonRegion 0 19.15 2.12 4.87 5.27 13.25 3.82 8.20 24.39 12.55 4.15 260.97 18.73 113.10 140.29 216.69 1.09 177.53 0.00 3.27 4.41 0.81 8.70 6.85 31 E5_Da NovelBoundary 0 10.22 2.57 3.67 6.63 3.31 0.00 9.63 15.20 10.01 7.36 2.68 6.00 6.82 2.47 8.90 0.00 14.03 2.57 3.67 3.07 2.47 2.82 8.54 32 E5a_E6a KnownJunction 0 7.11 0.00 0.00 0.00 4.24 0.00 6.27 13.39 3.94 0.00 113.45 0.00 105.19 105.42 142.04 0.00 93.41 0.00 0.00 0.00 0.00 11.27 6.49 33 I5 Intron 0 12.49 3.44 11.26 9.17 12.59 2.84 10.43 8.87 7.41 9.52 10.69 9.38 3.63 12.45 16.32 5.58 15.74 5.25 6.96 6.98 5.32 2.49 6.24 34 I5_SR2 SilentIntronRegion 0 18.58 2.13 3.83 4.83 16.56 1.92 10.16 6.03 1.92 4.59 5.71 4.89 2.81 6.00 9.77 0.52 8.65 1.44 2.23 3.10 3.26 1.09 2.69 35 I5_AR1 ActiveIntronRegion 0 13.66 3.40 16.58 12.71 16.64 2.91 11.08 8.94 7.99 9.23 11.63 9.33 3.18 13.71 19.18 7.13 20.25 6.83 6.47 6.53 5.18 2.70 6.79 36 I5_SR3 SilentIntronRegion 0 11.61 4.54 8.07 9.42 9.06 3.27 10.88 8.34 8.41 12.22 11.06 10.75 4.91 13.84 15.47 6.07 14.79 6.32 6.72 7.27 5.66 3.34 7.32 37 I5_AR2 ActiveIntronRegion 0 22.15 2.35 12.66 9.51 14.69 3.10 15.80 14.60 9.72 19.55 20.53 4.14 7.82 11.19 21.21 3.76 19.66 6.94 15.86 9.79 7.54 5.51 8.61 38 I5_AR3 ActiveIntronRegion 0 12.58 5.54 13.21 6.52 14.27 5.88 10.39 16.59 9.41 12.19 12.11 19.11 5.66 12.97 13.71 6.29 19.69 8.03 14.90 6.46 8.81 4.31 5.81 39 I5_AR4 ActiveIntronRegion 0 8.06 2.54 13.83 5.58 8.82 1.76 8.89 12.05 10.45 9.64 11.99 11.64 2.25 15.94 19.68 7.59 14.99 2.70 13.18 11.91 6.99 0.78 7.80 40 E6_Aa NovelBoundary 0 33.41 5.92 4.29 6.96 4.24 2.38 14.00 8.17 9.20 0.00 2.68 0.00 0.00 7.24 23.86 0.00 7.39 4.97 3.86 3.26 5.50 3.12 0.00 41 ER6a ExonRegion 0 29.63 0.60 5.68 8.04 20.33 4.95 6.35 29.74 13.05 3.40 262.82 21.92 126.63 165.15 267.32 2.56 194.03 0.82 3.73 6.22 3.84 8.94 7.41 42 E6_Da NovelBoundary 0 6.82 0.00 4.76 3.03 3.65 2.38 4.46 5.01 3.36 2.44 2.16 44.11 0.00 16.60 43.88 0.00 7.95 2.45 4.42 11.44 2.97 2.57 0.00 43 E6a_E7a KnownJunction 0 21.41 0.00 6.62 5.73 11.46 10.11 0.00 22.84 8.13 2.71 190.15 18.76 72.72 156.69 207.80 0.00 173.26 0.00 0.00 0.00 0.00 12.31 10.76 44 E6a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 I6 Intron 0 5.18 0.71 7.02 6.38 2.80 1.92 4.62 7.20 3.21 3.58 12.83 6.32 6.75 7.91 16.93 3.11 3.46 1.92 2.23 1.49 7.70 0.73 0.00 46 I6_SR1 SilentIntronRegion 0 5.25 0.72 7.11 6.46 2.84 1.95 4.69 7.30 3.25 3.63 13.01 6.37 6.84 8.02 17.17 3.16 3.51 1.95 2.26 1.51 7.80 0.74 0.00 47 E7_Aa NovelBoundary 0 3.48 5.53 13.28 7.49 0.00 2.90 5.61 11.67 6.97 7.20 15.16 5.55 6.82 12.07 20.03 4.19 3.65 4.73 0.00 7.67 6.12 0.00 11.95 48 ER7a ExonRegion 0 17.64 0.00 3.27 2.23 3.48 8.19 2.52 20.89 6.59 3.10 146.29 29.44 80.36 127.85 172.48 0.00 139.35 1.60 0.00 0.04 0.00 15.24 6.66 49 E7_Da NovelBoundary 0 9.48 6.45 9.20 17.71 0.00 0.00 6.23 20.62 9.92 8.46 32.96 18.91 6.33 19.42 41.16 3.93 12.44 2.53 4.24 16.94 0.00 0.00 3.50 50 E7a_E8a KnownJunction 0 18.52 0.00 0.00 0.00 3.90 5.00 6.58 21.44 3.04 0.00 98.39 0.00 46.59 74.64 143.27 0.00 127.26 0.00 0.00 0.00 0.00 5.02 0.00 51 E7a_E8b KnownJunction 0 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 1.79 0.00 10.00 0.00 0.00 11.24 19.28 0.00 25.43 0.00 0.00 0.00 0.00 3.12 0.00 52 ER8a ExonRegion 0 14.82 0.00 0.31 0.00 2.68 3.67 3.97 16.85 5.25 2.29 98.09 7.58 49.25 76.33 138.53 0.00 115.53 1.85 0.00 1.60 0.00 6.77 0.00 53 ER8b ExonRegion 0 12.65 0.81 8.14 4.59 9.22 9.01 12.41 26.39 10.13 8.98 113.35 14.27 32.98 109.46 175.23 5.92 131.65 1.01 2.54 5.87 0.00 4.41 12.87 54 E8a_E9a KnownJunction 0 23.71 0.00 0.00 3.63 4.33 0.00 0.00 15.40 2.92 1.26 71.02 0.00 33.44 95.59 180.60 0.00 105.10 0.00 0.00 0.00 0.00 19.29 0.00 55 ER9a ExonRegion 0 24.26 1.82 11.77 7.82 12.31 3.29 7.24 13.95 8.54 8.47 92.72 4.10 19.11 85.50 146.44 1.94 85.16 4.46 4.41 4.34 18.30 14.94 14.21 56 E9_Da NovelBoundary 0 6.67 3.35 12.24 5.23 0.00 2.90 4.24 2.09 8.83 11.93 17.58 37.51 0.00 15.36 14.83 7.95 16.83 2.57 12.71 5.50 3.09 3.12 0.00 57 E9a_E10a KnownJunction 0 0.00 0.00 10.41 10.82 3.14 0.00 0.00 14.79 8.04 7.55 88.39 0.00 6.82 31.61 58.59 0.00 57.78 1.66 0.00 0.00 25.58 11.70 7.09 58 E10_Aa NovelBoundary 0 3.63 0.00 18.42 3.36 0.00 0.00 1.99 7.15 7.06 5.64 16.74 11.10 0.00 4.59 23.49 4.19 18.42 6.84 0.00 0.00 8.71 0.00 3.16 59 ER10a ExonRegion 0 55.96 3.01 11.48 15.89 22.99 4.04 12.80 7.75 9.99 7.49 95.40 29.77 18.25 66.30 123.48 7.72 85.12 2.86 11.86 7.89 26.19 26.68 22.55 60 ER10b ExonRegion 0 2.12 0.00 0.61 2.73 2.68 3.67 0.66 0.00 0.00 1.15 3.87 0.00 0.00 8.12 8.70 0.00 6.60 0.00 0.00 0.00 0.00 0.00 0.00