Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ELL Gene 0 15.87 5.90 17.60 8.56 8.31 7.54 8.76 14.76 14.39 16.97 54.11 26.06 31.22 72.80 106.83 94.07 81.39 17.01 13.14 11.40 49.53 53.71 73.90 2 262809 Transcript 0 31.31 11.35 39.43 15.90 20.78 11.76 16.41 27.05 26.08 26.80 89.78 49.38 81.82 136.38 209.40 148.20 125.39 27.40 15.67 17.30 67.02 77.44 103.67 3 392395 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 ER1a ExonRegion 1 5.12 0.00 0.51 0.89 0.31 2.13 1.11 1.45 0.26 1.89 8.81 0.60 3.49 6.01 24.63 20.67 14.43 1.25 1.85 1.88 4.66 3.00 23.22 5 E1_Ab KnownBoundary 0 14.37 0.00 2.75 1.76 0.00 5.62 0.00 2.55 2.58 4.14 25.53 0.00 6.82 19.19 68.36 53.15 35.81 3.69 4.24 3.20 11.37 5.82 61.80 6 ER1b ExonRegion 1 39.92 7.15 22.77 8.09 12.14 19.36 23.93 18.38 17.33 27.52 88.99 12.21 22.35 74.82 145.88 164.96 168.19 10.22 40.90 21.20 78.53 62.00 200.28 7 E1a_E2a KnownJunction 1 6.67 0.00 12.92 7.06 0.00 0.00 0.00 6.61 10.53 17.62 100.82 12.30 5.84 33.08 59.58 38.96 110.24 7.09 0.00 5.43 103.48 20.33 16.39 8 Ix Intron 0 6.32 1.00 8.07 1.91 2.88 1.04 2.95 5.77 5.27 4.15 1.02 2.95 3.48 1.53 10.09 10.71 8.76 3.46 2.69 4.70 6.92 2.30 20.39 9 Ix_SR5 SilentIntronRegion 0 6.31 0.92 8.73 1.96 2.89 1.03 3.09 6.40 5.85 3.86 0.86 3.01 3.97 1.63 10.85 12.59 9.57 3.89 3.36 5.25 7.14 2.23 23.42 10 Ix_AR5 ActiveIntronRegion 0 6.15 0.73 4.25 2.03 2.24 1.54 4.79 4.30 5.51 2.69 1.37 5.12 4.06 1.66 13.55 12.13 9.54 3.87 1.85 4.79 5.94 1.66 21.65 11 Ix_SR4 SilentIntronRegion 0 7.54 1.43 8.96 2.13 3.89 1.40 2.87 6.04 6.09 5.28 1.15 3.82 3.83 1.59 10.69 10.09 9.33 3.86 2.18 5.05 7.92 2.41 20.94 12 Ix_AR4 ActiveIntronRegion 0 4.99 1.29 11.74 2.32 3.47 0.34 4.02 5.74 3.49 5.37 0.72 2.08 2.87 2.42 7.99 10.50 9.41 3.11 2.60 4.65 6.11 2.37 20.10 13 Ix_AR3 ActiveIntronRegion 0 6.00 2.20 6.90 1.85 3.11 1.03 4.67 10.81 4.78 8.47 2.72 5.94 13.92 1.25 13.37 10.21 13.72 6.51 7.72 4.72 12.60 4.55 29.90 14 Ix_AR1 ActiveIntronRegion 0 9.26 0.86 4.37 2.79 3.41 5.46 3.03 2.13 1.63 3.58 1.64 3.36 6.80 6.40 15.50 17.93 16.09 2.17 2.34 5.39 8.10 5.90 23.52 15 E2_Aa NovelBoundary 0 14.00 0.00 2.87 0.00 4.07 5.00 1.94 0.00 1.30 0.00 0.00 0.00 0.00 4.94 10.38 8.20 0.00 0.00 4.24 0.00 0.00 0.00 4.35 16 ER2a ExonRegion 1 0.75 1.27 24.35 7.89 1.28 2.06 6.92 16.71 19.92 33.86 223.85 17.23 17.39 105.47 181.69 119.50 364.82 28.87 32.45 25.40 168.68 53.17 132.76 17 E2a_E3a KnownJunction 1 0.00 3.35 34.42 12.45 8.66 0.00 5.87 31.67 28.53 34.60 289.28 32.41 35.55 216.67 381.85 254.55 516.60 47.26 65.70 38.54 158.34 121.49 250.54 18 Ix_SR3 SilentIntronRegion 0 18.97 0.90 8.50 0.70 3.92 0.99 5.08 6.71 4.99 2.25 1.31 5.91 3.80 0.23 5.58 5.10 6.74 5.28 3.48 1.82 2.61 6.05 14.52 19 Ix_AR4 ActiveIntronRegion 0 10.58 0.68 5.31 3.25 0.80 2.84 2.65 5.53 0.00 1.78 0.00 4.33 0.63 0.00 5.22 4.71 2.64 3.82 6.90 1.74 10.43 1.53 21.19 20 Ix_AR3 ActiveIntronRegion 0 10.88 0.00 9.10 1.36 2.68 0.26 2.65 5.68 1.24 3.44 0.00 0.00 4.69 0.00 0.00 11.04 3.30 0.26 6.37 0.00 8.81 1.79 4.61 21 ER3a ExonRegion 1 5.66 1.28 21.97 16.58 8.36 9.35 5.19 23.42 24.03 26.17 92.81 20.37 39.94 136.64 251.62 312.07 122.43 44.35 57.81 32.47 73.81 107.63 295.30 22 E3a_E4a KnownJunction 0 6.67 0.00 17.95 17.88 30.31 49.29 20.40 22.22 15.22 18.00 70.97 32.41 20.45 115.31 167.87 79.38 113.88 24.79 8.75 14.57 68.51 72.62 108.50 23 ER4a ExonRegion 0 19.22 9.65 26.42 10.50 14.08 16.86 16.15 19.61 21.12 19.11 73.37 27.48 22.85 116.76 176.98 117.29 117.06 20.66 12.16 20.32 83.16 94.62 77.32 24 E4a_E5a KnownJunction 1 68.46 5.85 29.92 13.45 3.65 10.11 14.18 39.27 23.67 28.39 92.87 36.91 12.82 134.44 209.28 186.96 124.08 28.69 29.55 23.01 93.65 111.32 89.89 25 ER5a ExonRegion 0 23.76 7.77 29.44 11.80 10.54 9.89 10.44 19.30 23.88 29.47 76.95 30.53 22.55 134.57 195.80 152.02 119.13 32.14 22.51 25.93 86.47 90.86 104.75 26 E5a_E6a KnownJunction 0 3.04 5.79 23.12 11.39 0.00 7.89 8.08 30.31 19.50 47.09 101.66 74.12 31.98 133.20 159.34 213.36 113.70 54.64 8.28 14.96 85.13 111.93 167.99 27 Ix Intron 0 3.06 0.78 4.32 2.06 1.15 0.62 1.76 3.49 4.40 2.89 1.13 1.13 0.88 1.42 6.39 5.36 8.49 3.48 1.08 1.68 6.31 2.68 17.35 28 Ix_AR3 ActiveIntronRegion 0 2.97 1.12 2.94 3.22 1.55 1.77 1.78 4.73 5.82 6.11 1.90 1.15 2.62 3.85 8.66 8.40 10.29 5.49 1.21 1.37 2.59 2.75 19.37 29 Ix_SR2 SilentIntronRegion 0 0.76 1.32 6.19 1.95 0.98 0.66 1.23 3.24 4.72 2.11 2.00 1.28 0.64 1.34 7.22 3.98 6.76 2.79 2.09 1.52 5.42 2.64 17.96 30 Ix_AR1 ActiveIntronRegion 0 1.65 0.55 4.31 0.79 0.72 0.25 2.53 2.63 6.10 3.35 0.26 0.00 0.00 1.15 6.39 4.56 10.80 4.93 0.86 1.81 9.30 1.34 18.49 31 E6_Aa NovelBoundary 0 10.52 0.00 0.00 4.59 0.00 0.00 2.03 1.97 6.39 0.00 0.00 6.00 8.12 0.00 17.80 8.72 4.30 3.73 0.00 3.20 0.00 0.00 23.99 32 ER6a ExonRegion 0 12.31 5.84 28.42 13.54 5.76 6.06 8.37 32.87 29.62 43.25 124.25 57.95 69.75 165.65 247.65 207.74 198.34 45.99 21.41 24.58 96.96 145.51 145.54 33 E6_Da NovelBoundary 0 0.00 0.00 10.94 1.93 4.24 2.90 4.42 23.82 7.41 1.61 6.90 0.00 5.84 4.77 10.88 25.04 27.30 11.57 4.80 9.59 5.31 6.06 49.00 34 E6a_E7a KnownJunction 1 3.48 0.00 16.53 12.72 4.07 0.00 2.25 9.49 27.72 45.50 90.23 37.06 26.30 63.10 137.34 67.16 200.28 8.54 3.76 3.26 76.79 71.40 51.05 35 Ix Intron 0 11.26 1.62 6.83 3.91 4.82 2.67 4.19 9.95 9.49 6.23 5.10 4.51 5.40 8.99 22.34 26.20 17.52 8.96 4.56 5.24 15.09 15.13 38.52 36 Ix_AR6 ActiveIntronRegion 0 8.08 0.93 10.06 4.19 3.34 1.15 3.59 7.92 11.89 5.77 6.60 4.14 5.98 11.12 24.33 28.82 21.49 8.45 8.05 8.03 19.24 15.30 45.54 37 Ix_SR3 SilentIntronRegion 0 12.83 1.86 5.61 3.14 3.62 0.92 5.29 10.95 9.20 6.93 4.91 2.43 2.42 7.86 20.99 24.07 16.00 7.00 3.62 5.73 15.31 12.50 40.97 38 Ix_AR5 ActiveIntronRegion 0 7.11 1.96 7.26 2.48 0.00 1.64 1.32 10.37 5.43 5.12 0.00 0.31 19.43 12.01 28.08 41.72 24.64 13.53 13.20 2.43 18.18 19.64 41.01 39 Ix_AR4 ActiveIntronRegion 0 11.20 2.32 10.06 3.19 2.33 2.77 4.30 13.46 11.15 7.54 4.01 8.67 9.24 13.85 31.90 34.14 25.15 15.00 5.70 6.84 20.67 18.14 43.70 40 Ix_SR2 SilentIntronRegion 0 9.96 1.27 5.28 4.03 6.05 3.88 4.36 7.69 8.44 5.65 5.00 3.45 5.06 6.90 16.44 23.76 13.20 7.02 3.46 3.48 11.90 12.91 31.09 41 Ix_AR3 ActiveIntronRegion 0 16.38 2.34 6.63 7.15 11.78 4.88 3.18 15.07 10.41 6.59 7.73 7.12 4.43 8.46 26.68 26.29 19.86 13.33 3.57 5.23 12.42 23.97 42.33 42 Ix_AR2 ActiveIntronRegion 0 11.75 1.81 4.58 3.82 0.04 1.72 1.43 6.41 5.89 3.32 1.52 8.73 13.28 9.94 22.36 22.36 14.52 5.15 3.68 1.47 13.49 16.28 44.00 43 Ix_AR1 ActiveIntronRegion 0 22.75 0.00 5.13 1.36 0.84 5.39 0.00 3.13 3.71 3.44 0.24 4.33 2.35 11.37 29.74 18.76 12.17 1.85 9.16 2.53 13.08 20.57 48.64 44 Ix_SR1 SilentIntronRegion 0 11.82 0.00 2.54 0.09 2.12 2.94 0.00 1.01 2.30 1.64 1.63 1.19 3.40 3.19 24.41 5.94 9.68 1.66 1.59 2.68 5.36 12.47 17.57 45 E7_Aa NovelBoundary 0 14.08 0.00 3.02 0.00 3.40 0.00 2.08 3.90 7.78 10.74 4.84 6.30 0.00 2.88 4.82 15.47 8.51 1.99 4.61 7.99 5.87 8.76 23.56 46 ER7a ExonRegion 0 20.10 7.97 15.59 9.44 8.41 9.34 8.09 22.31 22.03 36.11 89.45 57.00 57.01 103.63 160.91 176.27 157.66 18.82 10.21 9.52 69.00 115.95 121.58 47 E7a_E8a KnownJunction 0 44.97 31.90 39.27 28.53 45.25 24.36 14.66 51.14 36.40 42.68 155.09 52.07 91.39 152.81 287.66 311.20 222.25 54.97 3.48 30.10 107.37 272.31 234.83 48 ER8a ExonRegion 0 25.56 8.36 24.50 10.97 13.00 13.81 10.80 23.65 23.61 28.63 98.85 60.56 84.02 130.59 218.12 165.20 143.41 26.16 18.78 11.55 97.78 111.95 105.64 49 E8_Da KnownBoundary 0 30.38 5.59 21.64 9.92 0.00 5.74 9.85 24.32 20.57 23.58 85.23 52.82 53.57 113.19 173.19 138.43 65.08 39.63 12.61 7.99 91.99 88.11 115.33 50 E8a_E12b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 ER8b ExonRegion 0 19.43 8.67 24.15 6.77 6.03 10.33 8.72 22.02 21.77 20.99 81.09 49.82 77.57 98.93 171.57 110.26 114.37 27.69 12.34 12.58 83.58 68.89 87.11 52 E8b_E9a KnownJunction 0 33.93 3.29 39.80 7.52 28.44 14.03 11.44 12.16 29.63 27.08 101.24 42.61 60.87 114.25 180.60 192.94 116.97 21.60 8.94 9.33 87.29 66.07 76.06 53 Ix_AR3 ActiveIntronRegion 0 11.78 1.48 2.21 0.74 4.87 1.34 1.93 1.84 0.95 2.18 3.27 0.00 2.61 0.00 12.56 6.50 3.61 1.00 1.16 0.00 5.04 0.76 11.08 54 Ix_SR2 SilentIntronRegion 0 6.57 0.84 2.51 0.84 1.11 0.00 1.65 3.74 1.40 3.35 1.08 2.96 0.00 0.55 9.18 2.80 1.37 0.00 0.00 0.00 4.84 0.86 17.05 55 Ix_AR2 ActiveIntronRegion 0 13.33 0.00 2.91 0.21 2.13 1.20 0.74 4.24 2.03 2.13 0.00 0.00 1.91 0.89 6.21 6.97 1.60 0.52 0.00 3.39 4.61 0.59 4.50 56 ER9a ExonRegion 0 16.30 5.55 46.51 18.04 19.49 6.62 7.21 29.46 34.23 33.98 99.44 62.87 94.01 138.53 160.18 166.93 120.90 42.50 23.25 22.58 67.13 82.78 130.48 57 E9a_E10a KnownJunction 1 10.45 12.43 64.40 31.10 0.00 17.55 4.20 40.33 43.75 33.60 86.13 94.38 149.83 198.25 313.62 217.72 162.88 58.41 25.88 17.58 73.33 129.51 168.25 58 ER10a ExonRegion 0 23.17 9.51 51.89 16.52 12.29 13.22 14.75 29.06 32.19 35.91 96.54 51.93 64.08 138.48 206.76 146.62 146.49 34.27 13.82 19.74 83.64 88.36 115.38 59 E10a_E11a KnownJunction 0 55.19 16.18 67.12 31.30 23.17 12.38 29.15 49.74 29.22 44.05 125.29 35.86 81.16 179.94 223.75 156.28 134.74 31.34 12.80 28.83 81.42 61.11 104.14 60 ER11a ExonRegion 0 64.44 33.22 60.70 25.08 59.70 20.42 40.37 46.78 31.56 40.88 159.14 64.65 125.80 240.12 347.83 237.57 206.64 34.16 30.23 35.89 86.34 135.98 172.67 61 E11a_E12a KnownJunction 0 73.05 20.13 30.07 15.15 51.95 16.35 40.59 31.05 31.02 21.46 115.98 76.22 147.39 214.02 425.86 188.41 201.78 14.96 20.99 19.62 80.37 113.71 126.00 62 ER12a ExonRegion 0 12.04 4.54 9.15 6.67 6.46 4.60 6.63 8.49 7.19 8.13 24.16 14.89 13.97 35.29 39.21 44.61 34.68 7.82 6.56 4.96 22.46 24.94 33.35 63 E12_Ab KnownBoundary 0 3.11 0.00 6.33 0.00 0.00 0.00 0.00 4.81 1.74 1.26 9.00 5.25 0.00 0.00 15.45 15.04 20.94 0.00 0.00 0.00 0.00 27.07 15.28 64 ER12b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00