Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GRAMD1A Gene 0 79.76 104.24 381.36 106.29 61.80 89.19 45.63 168.79 178.59 196.49 229.80 69.69 104.46 187.85 197.03 118.64 166.69 305.62 190.74 153.61 221.86 173.16 218.18 2 453966 Transcript 0 4.07 1.53 2.12 0.39 2.75 0.33 0.25 3.71 4.60 0.17 1.64 0.00 0.00 0.01 0.03 0.05 2.40 0.07 0.00 0.01 0.00 0.59 0.02 3 411896 Transcript 0 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 3.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.57 5.39 0.00 0.00 0.00 0.00 0.00 4 317991 Transcript 0 26.08 207.91 277.53 79.86 54.50 177.80 47.18 99.38 133.63 127.94 0.00 0.24 0.00 0.59 0.16 2.27 0.28 274.43 210.17 133.28 0.00 0.12 5.34 5 424536 Transcript 0 32.99 8.30 53.50 13.06 3.80 5.21 14.82 20.49 16.59 19.15 66.60 33.90 31.14 28.45 56.76 24.69 69.79 48.15 21.80 24.21 64.42 27.94 47.09 6 ER1a ExonRegion 0 2.00 0.11 2.72 0.77 1.93 0.65 0.50 5.08 3.57 0.35 0.60 0.00 0.00 0.01 0.05 0.10 1.15 0.14 0.00 0.02 0.00 1.19 0.04 7 E1a_E3a KnownJunction 0 6.15 2.96 1.51 0.00 3.57 0.00 0.00 2.34 5.64 0.00 2.68 0.00 0.00 0.00 0.00 0.00 3.65 0.00 0.00 0.00 0.00 0.00 0.00 8 E2_Aa NovelBoundary 0 6.30 3.35 1.51 0.00 0.00 29.98 6.05 3.82 1.48 1.34 26.74 12.60 12.17 0.00 8.90 46.48 31.88 13.43 34.17 5.24 26.26 0.00 51.82 9 ER2a ExonRegion 0 4.67 5.95 13.42 2.38 0.48 19.15 5.90 12.18 5.43 11.33 65.28 8.63 12.49 19.93 19.91 18.39 45.76 40.29 31.57 13.44 53.80 7.87 54.40 10 E2a_E3a KnownJunction 1 10.00 14.14 59.67 24.94 11.38 16.58 7.33 36.60 33.16 50.66 147.77 31.21 13.31 42.09 43.76 34.35 112.11 89.33 72.00 40.27 178.35 43.66 57.02 11 I2_SR3 SilentIntronRegion 0 24.39 9.55 51.24 26.22 26.27 10.96 31.64 19.79 15.32 23.16 10.31 6.79 20.19 14.58 26.40 19.66 25.36 63.61 20.39 33.38 16.21 9.78 34.47 12 I2_SR6 SilentIntronRegion 0 15.83 9.01 25.10 19.10 19.06 11.10 18.92 15.76 10.02 12.04 5.84 7.70 6.29 12.05 16.57 17.49 17.94 43.65 15.52 24.05 15.44 8.66 22.74 13 I2_AR6 ActiveIntronRegion 0 23.06 9.75 38.09 23.21 11.79 7.07 18.08 22.16 18.50 16.88 10.08 11.19 11.85 11.34 14.94 15.05 23.91 68.04 12.31 26.89 21.97 10.80 20.36 14 I2_AR7 ActiveIntronRegion 0 14.29 12.86 49.94 12.45 18.32 7.05 18.64 15.66 11.27 16.11 6.13 9.19 4.04 6.67 14.64 20.53 19.70 90.48 9.70 21.90 19.66 7.66 26.97 15 ER3a ExonRegion 0 62.43 80.46 219.56 59.82 46.97 65.13 40.31 111.47 122.95 164.74 220.88 53.78 51.72 137.84 155.25 100.43 145.94 268.80 181.41 149.62 189.51 125.72 218.62 16 E3a_E4a KnownJunction 0 90.02 150.96 298.13 98.16 97.20 221.86 53.08 152.06 182.15 206.49 356.77 108.04 114.60 206.19 216.33 111.08 222.72 309.08 248.57 194.18 290.17 199.13 253.44 17 E3a_E5a KnownJunction 0 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 3.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.57 5.39 0.00 0.00 0.00 0.00 0.00 18 E4a_E5a KnownJunction 0 60.08 132.74 395.17 112.84 73.34 58.09 40.54 208.74 220.51 205.76 258.49 86.58 68.83 235.09 297.92 105.61 155.68 416.90 242.64 209.33 248.41 181.86 214.77 19 ER4a ExonRegion 0 80.83 154.07 434.60 130.12 99.13 149.76 58.00 231.12 265.02 275.91 384.37 121.23 96.26 261.33 281.84 137.43 237.98 462.82 301.55 250.46 352.17 230.18 278.84 20 I4_AR1 ActiveIntronRegion 0 17.44 6.38 8.60 7.97 5.23 2.88 6.75 2.02 7.22 4.69 5.31 1.40 3.36 0.97 1.61 7.00 3.88 8.66 6.25 5.01 3.46 0.82 8.06 21 ER5a ExonRegion 0 160.21 168.43 513.63 162.76 100.55 77.30 79.90 282.10 299.17 303.66 483.75 146.03 175.90 342.90 366.21 230.88 304.89 544.37 434.30 282.73 357.62 368.76 406.12 22 E5a_E6a KnownJunction 0 103.65 150.37 560.74 197.81 87.44 65.98 78.96 330.85 314.99 336.39 495.70 186.81 222.23 370.83 301.01 180.72 399.44 426.14 318.50 330.52 410.94 312.60 367.32 23 ER6a ExonRegion 0 68.46 120.27 522.07 150.23 77.16 90.05 58.65 257.17 288.90 309.21 399.78 171.60 178.22 282.38 262.42 175.53 324.25 382.93 258.05 271.52 362.11 289.59 334.89 24 E6a_E7a KnownJunction 0 64.38 163.66 742.58 210.96 93.46 138.50 71.99 353.11 376.41 402.98 467.59 280.74 369.94 270.47 332.90 192.94 359.05 414.87 316.15 312.56 403.53 292.51 405.56 25 ER7a ExonRegion 0 156.14 194.55 700.35 190.49 127.49 167.28 77.29 343.82 359.84 384.62 510.02 211.96 313.35 391.35 407.20 232.54 418.46 462.13 443.10 305.78 408.33 434.31 476.32 26 E7_Da KnownBoundary 0 18.00 9.54 62.51 24.77 8.40 9.31 10.82 39.88 24.65 35.70 112.13 20.41 33.44 38.55 44.01 30.93 86.40 42.45 18.17 19.75 80.80 26.76 52.07 27 E7a_E8a KnownJunction 0 103.13 207.73 720.79 172.41 167.74 198.92 74.86 290.35 315.19 371.26 400.73 157.55 168.98 296.49 266.40 169.53 299.58 473.94 380.25 330.20 347.56 291.17 292.54 28 ER7b ExonRegion 0 32.99 8.30 53.50 13.06 3.80 5.21 14.82 20.49 16.59 19.15 66.60 33.90 31.14 28.45 56.76 24.69 69.79 48.15 21.80 24.21 64.42 27.94 47.09 29 E7_Db NovelBoundary 0 106.91 12.30 50.74 12.35 35.40 15.22 13.34 39.27 22.74 20.87 84.28 51.32 82.46 38.97 95.80 52.64 79.85 30.97 66.92 28.63 84.45 53.82 103.12 30 I7 Intron 0 15.98 4.96 15.70 7.79 6.22 5.11 7.23 7.78 5.99 10.72 4.04 6.72 9.62 4.61 14.39 5.87 10.35 18.56 12.95 13.10 13.56 9.92 23.88 31 I7_AR1 ActiveIntronRegion 0 25.23 3.09 20.30 9.47 4.84 6.91 7.10 10.44 7.36 14.43 5.39 17.58 12.01 10.77 35.60 13.88 19.77 21.84 20.58 15.34 22.32 17.52 35.50 32 I7_SR1 SilentIntronRegion 0 17.59 8.83 17.93 10.95 7.59 6.27 11.31 9.82 8.57 13.65 4.47 6.33 16.07 4.22 10.23 4.71 8.29 22.26 14.11 14.35 15.02 9.33 31.30 33 E8_Aa NovelBoundary 0 14.15 27.56 17.95 10.69 16.38 2.90 24.78 10.93 9.98 11.74 5.16 7.65 0.00 7.95 4.45 16.92 9.54 30.18 8.85 37.26 11.12 7.90 21.60 34 ER8a ExonRegion 0 68.83 183.32 553.19 156.88 92.99 170.07 75.45 229.95 260.00 319.55 338.73 141.59 203.23 256.19 224.61 146.00 244.10 425.69 264.94 275.20 336.92 268.29 301.50 35 E8_Da NovelBoundary 0 34.90 5.92 19.01 18.68 12.82 2.73 14.57 20.21 16.84 25.47 13.00 6.30 19.32 17.54 30.04 8.54 43.01 68.44 24.66 37.39 25.88 5.76 19.38 36 E8a_E9a KnownJunction 0 55.86 204.31 485.58 140.28 66.13 175.81 64.30 201.96 267.42 253.95 357.99 153.50 170.28 288.78 296.06 154.32 238.62 428.30 240.57 210.99 275.90 230.42 328.82 37 E8a_E10a NovelJunction 0 10.52 14.47 71.85 25.97 10.44 0.00 17.97 25.67 10.56 33.31 4.26 0.00 0.00 2.47 19.04 20.59 4.77 46.05 9.04 5.88 5.44 6.06 11.44 38 I8 Intron 0 24.44 9.88 31.82 17.91 18.35 10.39 13.99 25.90 21.41 24.54 16.55 8.36 6.78 21.63 25.04 21.40 26.02 51.53 19.00 28.56 23.46 14.65 25.03 39 I8_SR1 SilentIntronRegion 0 32.69 6.64 32.52 15.05 15.24 16.06 13.48 14.88 16.70 21.99 12.86 6.99 5.52 17.54 21.80 23.33 22.94 46.77 17.86 27.28 15.98 16.75 18.94 40 I8_AR1 ActiveIntronRegion 0 16.94 8.69 34.44 23.07 14.89 8.68 12.69 32.42 22.84 28.78 20.59 4.61 5.33 26.84 27.89 25.75 33.49 69.68 23.83 32.03 30.67 15.44 35.34 41 I8_AR2 ActiveIntronRegion 0 39.11 12.30 27.83 20.12 31.34 25.32 26.29 52.18 17.17 22.83 26.23 5.57 21.66 30.86 50.29 18.40 40.87 89.04 44.44 44.28 40.09 18.45 28.39 42 I8_SR2 SilentIntronRegion 0 24.48 11.70 30.56 16.51 20.91 8.54 14.46 26.20 22.81 23.64 15.74 10.87 7.50 20.43 24.12 18.72 23.15 43.39 16.28 26.92 22.38 13.38 22.33 43 E9_Aa NovelBoundary 0 22.45 15.00 40.36 21.24 31.75 20.44 3.80 26.49 29.57 16.52 18.95 6.30 0.00 19.01 32.02 11.19 17.67 55.09 9.32 27.68 21.07 11.88 20.15 44 ER9a ExonRegion 0 61.25 145.37 530.70 143.85 82.17 112.30 72.36 207.98 244.35 273.06 332.66 145.78 238.03 302.59 295.75 176.33 241.29 552.23 298.78 227.24 311.82 256.55 343.82 45 E9_Da NovelBoundary 0 41.86 8.88 50.97 17.05 28.61 4.66 5.70 23.70 17.30 25.52 9.69 0.00 6.82 16.48 31.40 18.46 8.60 47.13 35.86 33.49 14.33 5.94 21.85 46 E9a_E10a KnownJunction 0 91.94 147.01 502.67 154.19 51.95 111.41 73.49 206.73 225.00 264.51 207.32 93.18 166.87 208.67 206.32 181.06 144.65 513.90 320.20 158.90 299.81 201.40 369.11 47 I9 Intron 0 34.53 5.43 28.70 16.26 3.97 4.35 7.85 19.09 13.10 17.23 14.33 4.46 6.87 18.75 24.34 21.15 19.58 38.67 13.22 26.50 16.32 3.71 27.86 48 I9_AR1 ActiveIntronRegion 0 37.61 6.01 31.37 17.59 4.40 4.83 8.69 21.11 14.46 18.83 15.11 4.94 7.63 20.07 25.59 22.28 21.34 41.54 14.53 28.84 17.70 4.11 30.67 49 E10_Aa NovelBoundary 0 42.38 5.85 68.21 25.64 25.98 10.73 14.93 26.57 23.84 37.02 15.85 11.10 13.47 26.31 34.12 19.74 17.20 65.50 25.51 14.19 31.44 5.39 30.47 50 ER10a ExonRegion 0 98.76 133.08 592.38 159.06 72.09 111.59 60.44 222.54 255.96 270.73 289.01 84.47 165.92 265.53 260.79 164.94 201.09 487.12 264.20 206.26 297.52 204.57 297.26 51 E10a_E11a KnownJunction 0 174.40 159.91 580.11 153.63 95.93 173.71 79.93 245.91 248.43 288.12 277.91 81.03 184.73 276.12 222.51 153.72 132.49 479.62 211.77 191.18 286.83 202.44 298.77 52 ER11a ExonRegion 0 110.29 129.79 546.42 130.64 71.34 142.75 57.00 222.90 259.83 276.65 305.74 72.17 123.90 235.90 231.95 172.22 194.02 471.97 265.60 204.99 330.12 235.98 289.96 53 E11_Da NovelBoundary 0 26.82 17.63 34.06 13.98 15.62 9.26 28.40 17.87 16.17 34.89 7.00 5.70 14.93 17.25 19.66 15.98 13.28 63.80 7.81 20.26 22.05 10.16 35.25 54 E11a_E12a KnownJunction 0 74.61 107.15 617.60 180.26 85.74 132.14 62.18 227.84 282.29 326.35 317.55 78.78 70.77 223.03 119.66 255.66 198.04 661.26 527.07 233.36 279.67 427.29 443.63 55 I11 Intron 0 27.89 12.29 29.58 20.47 25.09 9.10 12.52 19.37 23.97 19.74 16.78 10.62 19.72 17.96 16.40 18.89 12.79 36.66 15.06 24.24 19.12 25.03 28.45 56 I11_AR1 ActiveIntronRegion 0 23.32 7.68 17.82 12.80 16.00 5.20 11.67 13.78 10.45 12.37 7.30 5.61 3.91 14.30 18.43 14.04 12.45 21.96 9.01 22.10 15.25 15.09 22.19 57 I11_AR2 ActiveIntronRegion 0 29.68 13.94 33.76 23.21 28.35 10.48 12.93 21.41 28.68 22.37 20.07 12.38 25.13 19.35 15.90 20.68 13.03 41.88 17.20 25.19 20.59 28.57 30.81 58 ER12a ExonRegion 0 53.87 103.53 458.35 124.91 63.66 112.77 48.09 210.79 213.54 240.83 266.39 56.19 77.52 217.30 212.09 146.73 190.60 417.86 234.85 182.33 288.52 195.27 216.29 59 E12a_E13a KnownJunction 1 66.97 161.09 559.24 181.86 94.40 114.42 79.36 244.76 266.66 252.53 225.00 17.11 142.52 283.24 204.83 169.02 168.30 497.19 267.11 187.79 292.95 307.70 158.86 60 ER13a ExonRegion 0 79.38 138.83 537.88 139.53 69.48 122.51 52.71 236.83 241.84 265.41 285.71 67.85 115.40 253.01 245.73 146.56 177.53 457.40 289.92 178.35 300.56 202.54 260.50 61 E13a_E14a KnownJunction 0 81.27 133.40 446.35 126.29 45.25 102.44 42.44 214.28 182.41 219.06 178.83 36.91 58.92 212.26 263.68 141.67 175.32 315.05 164.15 150.52 256.31 117.26 195.23 62 ER14a ExonRegion 0 112.03 122.09 507.60 120.94 56.68 111.81 47.25 190.00 206.88 248.27 255.43 73.93 123.97 252.67 226.14 152.56 167.19 319.08 185.44 180.23 281.97 205.76 229.98 63 E14a_E15a KnownJunction 0 189.00 179.24 600.10 138.44 79.54 135.21 63.15 277.87 227.60 291.10 228.27 97.83 125.64 209.67 201.62 140.39 171.11 453.50 197.37 141.45 303.20 131.41 226.47 64 ER15a ExonRegion 0 96.38 144.50 579.45 168.30 94.96 177.98 78.11 245.49 241.87 292.33 264.05 95.46 112.97 299.10 254.78 172.33 209.26 468.72 272.10 204.19 290.68 242.73 323.28 65 E15a_E16a KnownJunction 0 88.90 197.20 565.00 150.46 135.74 176.21 110.58 286.08 220.69 244.42 266.44 117.94 161.68 267.47 211.01 177.39 216.64 394.93 211.86 186.51 324.70 307.64 217.59 66 ER16a ExonRegion 0 99.10 144.36 466.32 131.51 66.46 98.01 53.64 211.14 189.34 210.46 238.10 89.58 155.69 227.28 241.32 146.49 214.98 395.79 225.61 145.96 275.32 212.52 274.63 67 E16a_E17a KnownJunction 0 166.18 292.97 650.72 183.46 79.63 128.56 55.69 264.64 230.76 263.03 301.81 86.13 122.07 227.85 340.81 232.76 242.92 430.45 243.02 163.12 324.15 254.73 232.61 68 ER17a ExonRegion 0 118.40 200.98 402.45 108.55 79.36 156.81 70.03 180.62 179.53 182.71 243.83 45.46 121.46 227.65 245.06 152.73 197.04 305.40 187.50 152.78 280.35 196.63 235.30 69 E17_Da NovelBoundary 0 36.82 3.29 54.73 15.92 12.56 15.39 8.21 23.62 18.81 29.87 15.16 0.00 13.64 22.01 4.45 35.55 25.62 85.27 22.40 23.65 30.77 8.51 51.47 70 E17a_E18a KnownJunction 0 23.78 184.51 238.34 68.62 55.94 181.03 45.53 89.66 115.42 93.43 0.00 0.00 0.00 0.00 0.00 3.59 0.00 271.19 160.57 110.58 0.00 0.00 3.84 71 E17a_E19a KnownJunction 0 200.26 26.57 121.02 25.40 94.31 33.45 39.22 103.51 59.92 35.05 370.46 66.77 212.16 282.42 261.33 193.03 274.80 37.18 38.59 6.14 294.06 257.98 408.29 72 E18a_E19a KnownJunction 0 29.41 203.32 227.34 69.75 46.01 150.03 42.48 82.89 106.60 115.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 202.58 232.10 126.49 0.00 0.00 4.35 73 ER18a ExonRegion 0 25.05 235.90 366.90 101.19 61.54 202.33 53.51 125.60 178.89 175.09 0.00 0.72 0.00 1.76 0.48 3.22 0.83 349.53 237.84 162.77 0.00 0.35 7.83 74 E19_Aa NovelBoundary 0 50.97 20.33 80.33 32.23 52.04 12.78 19.52 54.92 28.10 42.28 51.33 0.00 0.00 38.38 41.29 42.13 30.01 40.33 26.64 29.66 49.24 59.76 39.61 75 ER19a ExonRegion 0 93.42 160.09 696.17 201.66 130.84 151.78 72.00 257.03 286.59 267.90 233.09 73.72 131.67 220.02 259.23 140.68 179.81 321.29 229.08 207.58 234.00 200.89 300.35 76 E19a_E20a KnownJunction 0 97.35 170.69 872.83 262.84 112.39 136.06 59.13 369.79 355.35 335.99 275.91 121.54 149.67 263.52 342.79 198.75 216.18 479.24 316.06 266.34 311.91 262.08 371.76 77 ER20a ExonRegion 0 68.10 94.05 616.85 189.62 74.04 84.25 43.21 285.42 286.45 295.87 321.42 66.16 117.95 258.17 317.96 152.39 204.14 373.34 224.24 211.27 288.18 221.82 267.38 78 E20a_E21a KnownJunction 0 96.68 123.20 622.66 209.46 58.74 77.51 56.17 333.48 333.10 289.22 273.12 72.17 96.26 250.40 341.43 194.39 234.60 326.20 165.56 161.84 236.36 238.93 250.37 79 I20 Intron 0 19.46 7.56 12.85 8.37 13.04 4.79 6.92 11.39 8.88 11.85 10.20 3.70 3.27 9.26 10.37 9.71 9.29 23.22 8.96 15.50 4.76 7.33 11.07 80 I20_AR2 ActiveIntronRegion 0 31.51 8.28 15.11 8.88 16.57 4.69 7.78 15.09 9.96 13.77 12.38 4.74 4.52 10.74 12.07 9.57 7.65 22.81 11.19 15.51 5.28 8.88 9.41 81 ER21a ExonRegion 0 114.48 83.85 231.94 77.23 64.66 54.74 33.87 118.34 119.37 133.28 151.35 35.51 53.77 121.43 163.64 71.59 112.78 168.58 101.24 100.41 124.39 120.68 135.36