Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF506 Gene 0 117.05 116.70 56.26 90.80 103.69 75.73 121.22 68.08 58.10 94.16 8.31 41.55 53.60 25.41 49.86 51.05 25.87 85.14 48.38 110.03 12.26 39.09 34.68 2 450683 Transcript 0 59.80 76.00 33.43 50.83 89.99 98.87 103.04 38.99 27.78 50.15 2.83 27.09 37.25 15.61 31.20 29.45 7.44 41.59 32.84 57.95 4.75 23.21 20.73 3 443905 Transcript 0 43.32 52.33 25.87 40.84 65.62 70.09 69.10 30.52 32.42 47.57 3.49 12.91 14.78 13.62 28.47 33.86 14.47 63.36 33.38 67.81 7.29 21.54 23.57 4 ER1a ExonRegion 1 59.11 65.59 10.69 11.66 114.31 217.71 151.76 11.26 10.02 11.79 0.00 0.00 7.20 20.06 36.84 50.60 7.06 71.76 67.11 56.01 8.61 22.09 41.66 5 E1_Ab KnownBoundary 1 202.33 211.08 29.27 32.56 345.84 645.93 515.38 29.86 21.04 34.97 0.00 0.00 12.50 59.04 110.64 149.88 28.33 198.77 222.12 173.15 31.51 62.46 121.73 6 ER1b ExonRegion 1 76.27 64.62 23.60 27.70 106.88 208.03 181.33 32.81 29.72 37.82 0.43 1.16 4.99 15.96 24.37 55.53 11.37 157.25 59.96 104.12 23.49 31.77 30.35 7 E1_Da NovelBoundary 0 0.00 0.00 8.78 3.20 7.72 0.00 1.99 6.78 5.06 4.16 2.68 0.00 0.00 4.94 4.45 0.00 12.44 6.96 0.00 0.00 0.00 0.00 0.00 8 E1a_E2a KnownJunction 0 34.82 12.96 3.40 11.65 3.57 5.39 29.46 22.22 23.38 31.51 7.53 0.00 8.28 0.00 0.00 11.19 18.14 49.37 14.02 32.02 17.42 3.12 3.84 9 E1a_E5a NovelJunction 0 0.00 0.00 3.13 1.83 0.00 0.00 0.00 24.81 25.61 14.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 10 I1 Intron 0 12.89 14.65 9.62 22.63 15.00 5.34 17.49 11.80 8.57 13.35 2.54 9.43 11.21 3.38 4.88 9.45 7.08 6.77 6.35 11.81 3.39 1.31 5.41 11 I1_AR1 ActiveIntronRegion 0 12.95 8.68 10.31 27.74 12.28 3.47 15.47 11.22 6.74 12.52 1.34 7.64 12.67 1.13 3.06 5.06 5.88 3.64 4.10 5.48 1.35 2.06 1.23 12 I1_SR2 SilentIntronRegion 0 20.00 21.24 17.05 32.42 20.88 5.98 19.38 18.46 11.99 18.80 2.07 11.44 13.36 3.17 4.31 8.90 7.92 8.70 8.66 15.56 3.90 0.78 6.44 13 I1_AR2 ActiveIntronRegion 0 14.43 22.19 6.10 29.53 14.08 4.53 23.27 13.22 8.78 18.41 6.21 10.05 14.19 5.59 5.38 15.15 11.47 12.17 7.19 17.34 5.28 2.91 10.34 14 I1_SR3 SilentIntronRegion 0 6.70 18.30 6.13 20.22 2.68 7.34 19.20 8.64 8.65 19.50 5.80 8.66 9.38 9.74 0.00 14.86 3.85 12.01 6.37 21.63 8.81 0.00 15.66 15 I1_AR3 ActiveIntronRegion 0 8.74 11.75 7.72 19.13 11.51 6.05 20.92 10.19 5.99 13.67 4.67 10.03 9.89 4.02 3.37 14.72 9.83 9.77 7.51 13.55 3.44 0.37 7.82 16 I1_SR4 SilentIntronRegion 0 9.62 9.25 5.19 18.36 11.48 4.24 18.49 8.08 8.31 12.29 2.41 11.61 10.33 3.68 4.69 9.06 7.32 6.28 4.66 11.52 3.66 2.29 4.84 17 I1_AR4 ActiveIntronRegion 0 0.49 5.86 3.31 13.06 8.03 4.22 7.98 2.24 5.36 8.22 3.16 11.92 7.13 2.74 7.50 4.13 12.05 2.26 0.99 6.80 1.80 0.00 3.17 18 I1_AR5 ActiveIntronRegion 0 10.59 6.94 5.28 18.41 11.14 4.63 11.52 7.03 7.51 12.02 5.57 13.83 22.82 4.41 4.04 10.42 11.69 2.24 4.02 8.42 1.14 1.38 4.27 19 E2_Aa NovelBoundary 0 76.61 21.25 18.60 44.25 24.79 7.67 37.85 10.23 11.49 29.41 7.90 18.01 19.15 12.07 0.00 25.04 16.36 6.59 8.66 5.94 17.30 5.51 8.45 20 ER2a ExonRegion 0 8.82 18.61 26.06 29.99 16.03 10.37 16.20 34.71 42.59 50.58 0.41 9.68 5.91 23.01 44.84 53.24 16.04 118.20 64.11 124.64 18.67 34.45 28.77 21 E2_Da NovelBoundary 0 73.86 80.18 22.18 61.63 32.00 7.50 48.62 16.59 26.01 36.51 10.11 18.16 60.71 2.41 15.20 27.51 8.79 39.84 31.81 20.33 22.61 8.08 23.13 22 E2a_E3a KnownJunction 0 25.49 51.96 43.76 63.69 102.46 39.98 35.24 54.79 46.82 69.60 0.00 24.61 13.96 10.01 34.12 84.51 18.79 140.73 52.71 158.13 13.65 36.62 58.47 23 E2a_E4a KnownJunction 0 0.00 0.00 5.17 0.00 4.24 0.00 3.97 6.16 9.14 10.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27.28 4.71 6.01 0.00 0.00 0.00 24 E3_Aa NovelBoundary 1 16.52 49.07 9.91 30.60 25.21 2.90 46.02 20.66 28.79 37.02 4.90 31.21 25.81 4.41 10.75 22.90 9.16 14.47 13.46 23.39 6.30 17.45 22.88 25 ER3a ExonRegion 0 11.07 30.61 22.72 38.50 113.94 237.15 132.62 23.32 33.85 50.06 0.00 10.06 8.45 14.60 33.85 29.07 11.14 69.44 25.58 86.39 5.81 27.32 21.84 26 E3_Da NovelBoundary 0 49.27 97.61 24.16 19.78 51.36 19.99 158.23 26.66 26.85 38.98 17.27 6.30 0.00 6.59 27.44 19.31 18.61 34.32 36.05 86.86 9.45 0.00 13.06 27 E3a_E4a KnownJunction 0 13.48 47.95 27.67 28.10 59.85 92.16 151.04 19.88 38.02 52.78 0.00 6.15 21.10 14.54 18.05 7.86 8.42 15.84 50.26 73.12 0.00 19.90 11.95 28 E3a_E5a NovelJunction 0 7.26 26.64 3.93 8.29 17.15 24.08 30.38 11.87 10.10 15.77 0.00 0.00 0.00 4.36 4.45 32.98 3.55 22.30 3.76 5.43 3.15 11.21 7.34 29 I3 Intron 0 25.01 33.44 15.39 31.11 27.80 9.47 34.51 28.60 19.12 30.54 2.75 15.97 23.97 5.86 17.88 19.23 5.29 15.12 12.10 45.35 3.40 6.80 8.72 30 I3_SR1 SilentIntronRegion 0 25.91 34.65 15.95 32.23 28.81 9.81 35.76 29.63 19.82 31.65 2.85 16.54 24.84 6.07 18.53 19.93 5.48 15.67 12.54 46.99 3.52 7.05 9.03 31 E4_Aa NovelBoundary 1 53.79 91.96 33.62 105.61 75.89 24.30 100.78 45.43 40.65 49.40 17.43 25.21 64.61 4.59 42.52 22.81 0.00 27.28 8.47 119.14 10.32 19.90 6.74 32 ER4a ExonRegion 0 125.75 110.82 58.98 87.90 99.88 82.57 152.41 70.90 66.22 105.55 5.73 42.73 57.35 25.65 46.59 54.88 29.44 95.58 55.93 152.46 12.00 46.29 44.94 33 E4_Da KnownBoundary 0 150.32 223.97 226.49 268.86 251.70 116.86 228.06 167.50 118.81 208.80 5.00 63.92 34.25 21.90 57.36 95.45 31.60 119.39 76.24 301.75 8.53 80.58 63.17 34 E4a_E5a KnownJunction 0 0.00 9.60 0.00 1.63 7.56 0.00 8.30 1.77 0.00 2.53 0.00 0.00 0.00 4.65 4.45 0.00 0.00 4.06 0.00 12.34 0.00 0.00 3.76 35 ER4b ExonRegion 0 120.28 162.41 84.42 140.82 151.42 78.91 153.38 99.55 64.17 127.71 8.48 81.27 104.55 26.78 56.75 37.76 15.24 25.72 26.69 111.82 5.63 47.54 20.53 36 E4_Db NovelBoundary 0 111.87 130.63 61.38 84.74 158.40 44.58 174.00 47.15 22.66 68.47 5.11 47.87 80.19 38.32 34.37 31.96 9.26 5.18 12.33 70.56 3.15 12.68 3.67 37 I4 Intron 0 83.15 69.00 28.52 63.93 75.74 22.37 62.68 31.43 23.34 52.97 8.96 38.34 64.29 17.09 31.32 41.34 8.05 26.46 13.99 32.71 4.30 21.86 19.35 38 I4_AR1 ActiveIntronRegion 0 83.15 69.00 28.51 63.93 75.74 22.37 62.68 31.43 23.34 52.97 8.96 38.34 64.29 17.09 31.32 41.34 8.05 26.46 13.99 32.71 4.30 21.86 19.35 39 E5_Aa NovelBoundary 1 116.32 102.68 26.05 60.86 60.53 4.66 71.15 33.11 24.07 37.66 19.16 45.16 26.62 4.59 15.70 86.30 16.74 45.93 16.09 59.12 10.44 10.65 15.71 40 ER5a ExonRegion 0 83.95 96.46 32.90 65.16 79.52 51.24 86.72 47.40 48.62 60.93 12.39 33.14 33.49 26.56 51.29 51.77 36.66 73.53 47.87 70.68 18.01 32.07 39.39 41 E5_Da NovelBoundary 1 132.39 59.20 25.28 41.42 44.65 18.17 44.12 23.86 24.42 47.28 2.68 0.00 13.64 9.48 14.71 54.17 4.77 119.80 17.79 46.98 11.68 6.25 16.13 42 E5a_E6a KnownJunction 0 10.89 6.12 0.00 1.76 6.71 15.16 4.42 4.68 4.86 10.99 0.00 0.00 0.00 0.00 5.19 4.36 0.00 7.38 0.00 3.26 0.00 8.51 0.00 43 I5 Intron 0 88.52 114.33 47.61 76.12 92.04 39.03 73.42 46.36 37.56 57.06 8.22 24.24 33.74 19.85 32.58 33.36 18.94 48.50 33.75 53.70 6.24 17.15 19.75 44 I5_SR2 SilentIntronRegion 0 13.19 46.53 11.41 21.38 27.60 13.68 23.12 14.00 9.38 12.68 2.30 11.65 12.90 9.03 12.90 12.17 7.11 4.87 11.22 7.64 1.14 10.80 6.52 45 I5_AR2 ActiveIntronRegion 0 120.34 231.16 50.62 96.18 84.51 30.99 65.08 50.91 32.50 60.00 3.68 18.97 31.77 9.13 18.66 15.76 7.34 15.77 17.20 48.72 0.81 18.81 9.73 46 I5_AR3 ActiveIntronRegion 0 39.92 51.47 54.29 67.22 99.01 49.62 79.34 37.32 36.24 58.92 13.72 29.71 30.39 31.36 35.83 63.05 31.57 79.18 37.74 53.46 10.65 19.79 26.48 47 I5_SR4 SilentIntronRegion 0 59.36 62.45 26.68 38.77 98.58 55.74 103.22 20.00 22.62 28.57 6.45 3.60 17.50 18.18 16.10 28.35 17.39 41.04 59.31 40.76 6.91 11.07 28.54 48 I5_AR4 ActiveIntronRegion 0 68.47 56.02 47.36 79.89 79.63 33.19 79.96 48.06 36.49 51.32 8.95 26.16 31.22 20.06 34.41 33.84 13.33 40.85 43.50 54.94 4.76 13.06 21.35 49 I5_SR5 SilentIntronRegion 0 73.93 62.83 52.99 91.13 94.76 25.93 62.87 61.09 39.65 70.36 18.26 44.64 45.77 17.81 31.91 25.72 39.61 20.01 17.79 42.33 4.48 18.46 17.11 50 I5_SR6 SilentIntronRegion 0 38.99 31.03 26.38 60.39 52.90 13.14 32.81 33.70 26.40 37.06 7.03 18.61 18.67 4.59 12.61 12.83 7.81 35.32 21.10 21.40 1.76 5.01 10.98 51 I5_AR5 ActiveIntronRegion 0 171.09 182.56 63.65 93.52 144.00 59.76 96.19 68.81 62.47 87.51 9.73 32.44 56.73 29.48 58.27 40.90 32.85 88.52 44.90 87.89 12.75 25.08 28.52 52 E6_Aa NovelBoundary 0 109.87 171.42 17.56 44.02 158.57 111.92 112.17 22.14 19.53 31.80 2.53 13.05 46.91 34.38 28.06 43.07 13.84 34.90 25.22 51.84 20.14 9.12 31.41 53 ER6a ExonRegion 1 158.35 123.61 54.02 86.99 89.29 54.96 65.39 61.78 54.74 86.14 12.06 16.40 26.47 24.96 52.31 59.49 26.25 132.52 57.25 70.72 13.52 26.36 29.58 54 IG45 Intergenic 0 11.18 10.08 6.26 13.50 10.35 4.72 12.60 4.12 5.84 10.41 7.48 8.71 11.12 6.08 11.20 16.38 13.07 8.77 5.98 9.21 4.54 1.35 5.51 55 IG45_AR2 ActiveIntergenicRegion 0 14.48 12.92 9.51 19.52 13.52 4.78 17.47 5.88 9.00 9.19 4.72 11.00 25.89 4.69 18.21 16.47 6.45 8.98 9.34 14.91 2.15 1.70 4.31 56 IG45_SR2 SilentIntergenicRegion 0 11.05 13.67 7.18 16.57 10.65 4.42 14.28 4.83 5.97 11.95 8.41 11.45 10.87 6.25 8.94 18.53 16.18 10.11 7.03 11.04 3.95 1.71 6.19 57 IG45_AR1 ActiveIntergenicRegion 0 15.87 4.60 5.96 10.75 14.04 7.95 12.62 3.92 6.55 14.28 12.11 5.26 4.08 10.70 17.62 20.65 18.23 11.04 3.95 5.42 10.53 1.13 8.53