Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF709 Gene 0 3.27 7.54 3.49 4.41 5.79 3.05 5.17 6.40 2.30 4.31 0.97 1.55 1.39 1.65 3.41 2.55 1.56 6.03 2.96 4.43 1.08 0.76 1.86 2 493776 Transcript 0 3.14 10.12 4.67 7.46 10.53 1.97 6.09 13.48 3.01 6.28 0.65 0.53 0.75 0.91 1.64 2.32 0.25 14.49 4.26 5.53 1.23 0.70 0.44 3 415784 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 455490 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 397732 Transcript 0 4.01 16.89 9.06 3.35 3.64 5.86 4.69 6.20 6.01 4.98 2.82 0.48 0.38 3.73 1.59 4.60 0.96 15.17 9.82 5.12 2.29 1.30 5.38 6 ER1a ExonRegion 0 1.73 6.19 1.23 1.61 1.22 0.00 0.12 0.63 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.81 0.00 10.16 3.47 1.26 0.00 0.00 0.00 7 ER1b ExonRegion 0 4.42 19.28 0.77 4.26 7.37 1.07 6.80 1.32 1.05 2.90 0.00 2.04 0.00 0.77 1.17 8.22 0.00 20.06 4.62 5.79 0.00 0.00 1.68 8 E1_Da NovelBoundary 0 3.78 0.00 10.56 6.66 0.00 0.00 4.24 10.88 0.00 7.44 0.00 0.00 0.00 0.00 0.00 7.43 0.00 17.53 3.86 9.78 0.00 0.00 0.00 9 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 Ix Intron 0 2.57 14.44 11.67 16.94 19.21 2.30 15.92 13.87 2.91 5.38 0.37 0.87 0.91 1.19 2.94 4.65 1.98 15.84 5.60 8.54 0.38 0.76 1.70 12 Ix_SR2 SilentIntronRegion 0 1.95 8.03 8.50 12.41 16.21 1.89 11.41 9.70 3.15 3.82 0.11 0.21 0.00 1.14 1.94 4.78 1.52 17.14 5.89 6.94 0.38 0.72 2.20 13 Ix_AR7 ActiveIntronRegion 0 0.00 26.44 26.26 28.62 28.67 12.05 19.86 24.20 4.59 9.67 0.00 0.00 0.00 3.25 0.00 8.07 0.00 22.96 12.74 8.51 0.00 0.00 0.00 14 Ix_AR6 ActiveIntronRegion 0 0.00 31.05 25.90 27.08 45.13 11.86 21.54 15.79 4.86 9.63 0.00 0.00 0.00 1.52 0.58 10.11 3.30 18.48 8.07 8.79 0.00 0.00 0.00 15 Ix_AR5 ActiveIntronRegion 0 0.24 22.60 20.97 21.65 46.97 10.19 19.86 12.10 2.33 7.26 0.00 0.00 0.00 0.00 6.12 6.93 3.30 16.84 3.89 7.33 0.00 0.00 0.00 16 Ix_AR4 ActiveIntronRegion 0 2.12 12.20 16.70 18.53 38.75 4.35 25.99 12.93 1.60 8.28 0.00 0.00 0.00 0.00 10.96 4.62 2.20 17.25 4.01 7.72 0.00 1.85 0.22 17 Ix_AR3 ActiveIntronRegion 0 2.12 4.65 16.63 16.16 17.20 5.50 27.61 14.57 1.94 7.86 0.00 0.00 0.00 1.16 2.07 0.00 0.00 20.85 9.56 14.29 0.00 3.57 2.94 18 Ix_AR2 ActiveIntronRegion 0 0.71 14.62 13.95 14.60 18.35 3.67 25.03 16.21 3.18 8.57 0.64 0.00 0.00 1.62 0.00 0.00 1.41 19.80 8.34 15.10 0.00 3.47 2.94 19 Ix_AR1 ActiveIntronRegion 0 2.99 20.24 17.78 22.14 16.93 1.64 11.11 15.78 4.18 7.19 1.23 0.77 0.84 1.89 3.87 4.52 3.15 22.51 7.35 11.17 0.00 1.45 1.35 20 Ix_SR1 SilentIntronRegion 0 3.02 16.68 10.96 17.98 21.26 2.45 20.52 16.13 2.23 5.53 0.25 1.48 1.70 0.97 3.21 4.62 1.85 11.95 4.54 8.54 0.57 0.45 1.52 21 Ix Intron 0 1.10 19.05 5.70 10.57 13.92 5.73 10.34 9.38 0.96 3.56 0.00 3.71 0.00 1.39 3.37 1.55 0.00 7.65 14.92 9.97 1.15 0.00 0.00 22 Ix_SR1 SilentIntronRegion 0 1.12 19.42 5.82 10.76 14.21 5.85 10.55 9.58 0.98 3.61 0.00 3.79 0.00 1.42 3.45 1.58 0.00 7.81 15.23 10.15 1.17 0.00 0.00 23 Ix Intron 0 1.19 9.15 7.19 17.52 14.05 1.72 15.64 13.52 1.73 2.88 0.00 2.82 4.50 0.00 2.02 2.23 2.48 5.01 5.38 3.99 0.00 0.39 1.10 24 Ix_SR1 SilentIntronRegion 0 1.20 9.22 7.24 17.65 14.15 1.73 15.75 13.62 1.74 2.91 0.00 2.84 4.53 0.00 2.03 2.25 2.49 5.04 5.42 4.02 0.00 0.39 1.11 25 Ix Intron 0 2.60 15.94 10.71 13.08 18.59 3.22 16.27 20.30 3.16 7.93 0.41 2.60 2.71 1.05 1.55 5.41 1.12 17.58 5.67 8.29 0.98 1.02 1.31 26 Ix_AR1 ActiveIntronRegion 0 5.59 37.17 22.66 26.39 41.04 5.38 35.65 33.07 6.03 14.58 0.17 2.83 6.11 1.86 2.76 6.57 1.59 19.03 6.81 13.11 0.61 1.47 1.57 27 Ix_SR1 SilentIntronRegion 0 1.70 10.87 10.04 11.37 10.70 3.21 10.60 21.70 3.09 8.15 0.76 3.36 2.27 0.97 1.59 5.80 0.87 24.26 5.67 8.27 1.54 1.10 1.41 28 E2_Aa NovelBoundary 0 3.56 2.89 11.65 7.16 15.11 0.00 4.28 12.90 0.00 1.34 0.00 0.00 0.00 7.42 0.00 0.00 4.68 24.21 4.80 12.40 0.00 0.00 0.00 29 ER2a ExonRegion 0 6.28 20.24 9.35 14.93 21.06 3.95 12.19 26.96 6.01 12.55 1.29 1.06 1.50 1.83 3.28 4.63 0.49 28.98 8.52 11.06 2.45 1.39 0.87 30 E2_Da NovelBoundary 0 10.45 4.87 140.86 234.94 11.21 8.35 6.58 238.43 162.64 166.22 0.00 0.00 0.00 0.00 4.45 8.72 0.00 57.29 17.13 15.28 0.00 8.51 4.35 31 E3_Aa NovelBoundary 0 0.00 2.63 4.79 1.76 0.00 0.00 1.90 0.00 5.35 5.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.30 4.14 3.20 2.66 0.00 0.00 32 ER3a ExonRegion 0 8.64 21.08 10.25 6.31 10.92 12.70 11.19 7.55 7.11 8.19 3.82 0.00 1.13 6.42 4.77 10.21 2.89 21.10 7.92 6.93 3.71 1.21 8.96 33 E3a_E4a KnownJunction 0 3.41 29.60 16.11 3.73 0.00 2.44 1.99 11.05 10.91 6.74 4.63 0.00 0.00 4.77 0.00 3.59 0.00 24.42 18.35 8.44 3.15 2.69 7.17 34 ER4a ExonRegion 0 0.00 3.67 8.87 3.67 0.61 1.26 0.40 6.71 8.47 6.29 2.59 0.00 0.00 4.55 1.94 10.30 1.33 12.64 7.27 3.65 3.73 1.67 5.46 35 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER5a ExonRegion 0 0.00 0.00 8.43 2.61 7.98 19.67 14.29 7.63 5.30 3.86 1.50 0.00 3.40 8.62 3.70 12.14 0.00 21.57 13.40 7.37 0.00 0.00 15.24 37 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER6a ExonRegion 0 1.73 17.81 0.29 0.32 1.13 3.99 4.31 0.10 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 1.40 0.00 0.00 0.00 39 E6_Da KnownBoundary 0 3.70 17.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 ER6b ExonRegion 0 2.76 4.73 2.25 2.88 3.46 2.39 3.88 3.45 1.42 2.98 0.80 1.79 1.47 1.33 3.57 1.54 1.79 1.34 1.69 3.36 0.76 0.67 1.52 41 ER6c ExonRegion 0 0.00 0.00 0.82 0.00 0.00 2.45 0.88 0.00 0.00 0.00 0.00 1.44 0.00 0.00 0.00 0.00 0.00 0.00 3.19 0.00 0.00 0.00 0.00