Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	CTD-2006C1.1	Gene	0	14.46	6.91	10.99	3.55	14.46	4.04	6.79	9.07	10.49	6.60	12.13	9.02	10.09	10.98	18.59	21.38	20.44	6.79	11.29	14.14	4.23	7.25	8.40
2	406892	Transcript	0	3.64	2.64	1.50	0.85	6.51	2.00	4.06	1.51	2.35	1.44	5.65	2.99	3.79	3.76	6.49	9.11	8.28	2.46	2.85	6.11	1.45	1.44	2.86
3	495324	Transcript	0	0.00	0.00	1.11	1.25	0.00	0.00	0.34	1.61	1.12	0.15	0.00	0.34	0.00	1.77	0.35	3.15	0.28	0.00	0.00	0.00	0.00	0.18	0.00
4	489336	Transcript	0	41.31	9.15	45.53	4.76	20.30	5.78	8.68	23.35	21.41	11.32	46.75	24.64	20.17	34.30	76.02	45.50	48.49	12.31	28.64	32.48	10.89	43.65	26.80
5	476474	Transcript	0	1.51	1.19	1.96	1.41	1.88	0.21	0.74	4.89	6.07	4.08	0.46	0.23	0.85	4.52	4.70	2.92	4.89	2.49	1.39	1.01	0.87	0.40	1.95
6	IG16_AR1	ActiveIntergenicRegion	0	14.21	6.16	3.19	7.41	18.34	0.85	4.62	8.97	4.49	4.78	0.45	0.83	3.98	8.57	10.00	12.35	2.31	0.64	0.74	1.97	1.54	0.49	1.37
7	ER1a	ExonRegion	0	2.17	0.66	0.86	0.27	8.63	2.15	6.36	1.51	0.86	1.35	12.23	0.00	0.00	5.44	12.69	16.72	11.88	2.03	3.50	4.73	1.87	2.08	4.70
8	E1_Ab	KnownBoundary	0	3.78	0.00	0.00	1.47	12.82	5.56	11.26	0.00	0.00	3.30	21.06	0.00	0.00	6.59	22.25	25.12	13.65	2.28	9.41	6.52	3.15	2.39	12.89
9	E1_Ac	KnownBoundary	0	3.78	0.00	0.00	0.00	8.32	0.00	4.46	2.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.36	9.44	0.00	0.00	3.26	0.00	3.12	0.00
10	E1_Ad	KnownBoundary	0	49.19	20.98	17.68	3.80	81.41	19.76	27.95	11.21	15.60	10.26	28.06	0.00	0.00	15.19	43.88	109.80	108.56	17.70	38.97	21.03	17.11	18.74	29.71
11	ER1b	ExonRegion	0	17.50	7.46	9.39	2.73	46.02	15.16	20.30	6.91	9.39	5.89	29.64	0.00	0.00	24.15	39.07	82.03	72.84	10.72	20.17	14.33	10.28	14.58	15.27
12	ER1c	ExonRegion	0	39.68	12.71	18.23	4.09	62.55	20.40	24.00	13.18	14.82	10.32	46.87	4.33	0.00	31.06	61.65	118.89	106.87	21.02	41.01	19.68	19.83	26.04	32.67
13	ER1d	ExonRegion	0	37.49	10.86	27.33	8.02	36.72	13.63	10.50	24.29	21.85	13.88	35.69	4.18	1.66	20.91	29.52	68.85	53.82	19.38	42.16	14.39	11.20	16.47	27.86
14	E1_Da	NovelBoundary	0	0.00	0.00	6.33	1.70	0.00	0.00	0.00	3.94	0.00	5.40	9.32	0.00	0.00	2.24	0.00	7.35	12.53	3.81	4.33	9.08	0.00	0.00	0.00
15	E1a_E2a	KnownJunction	1	17.34	3.35	24.30	10.02	0.00	0.00	2.03	30.39	36.52	21.30	59.07	13.20	0.00	14.60	29.05	33.75	115.85	4.02	15.53	29.66	18.29	0.00	6.66
16	ER2a	ExonRegion	0	28.59	2.70	40.51	5.40	1.09	4.19	0.76	27.69	27.05	10.39	63.43	28.19	12.35	39.28	70.52	56.11	77.34	8.71	31.01	33.52	15.92	39.03	21.04
17	E2_Da	NovelBoundary	0	6.37	0.00	14.37	6.13	0.00	0.00	6.40	16.84	11.05	8.30	10.32	18.91	0.00	19.54	11.62	16.66	0.00	2.57	16.66	13.17	0.00	2.39	0.00
18	E2a_E3a	KnownJunction	0	41.79	3.16	54.61	1.43	4.33	4.49	0.00	20.29	17.88	4.65	59.44	25.06	13.64	38.50	89.38	39.48	52.45	10.90	27.67	28.95	10.75	63.81	30.90
19	E2a_E4a	KnownJunction	0	0.00	0.00	1.71	1.93	0.00	0.00	0.00	2.55	1.65	0.00	0.00	0.00	0.00	2.47	0.00	3.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	E2a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	E2a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.57	0.00	0.00	0.00	0.00	3.41
22	E3_Aa	NovelBoundary	0	13.19	0.00	5.50	2.00	10.78	0.00	25.66	2.22	7.00	1.02	2.47	5.40	18.99	14.48	19.78	24.10	3.55	4.10	14.78	5.11	0.00	0.00	0.00
23	ER3a	ExonRegion	0	40.83	15.15	36.44	8.10	36.26	7.08	17.35	26.41	24.93	17.99	34.06	24.21	26.70	30.11	62.66	51.53	44.53	13.71	29.60	36.01	11.04	23.49	22.70
24	E3_Da	NovelBoundary	0	741.61	361.98	365.84	318.94	1012.73	297.56	522.67	468.16	214.93	326.83	578.99	826.77	737.13	334.69	681.75	283.77	263.30	40.91	50.17	143.49	38.86	740.50	127.79
25	I3	Intron	0	24.38	10.40	10.14	7.52	12.76	3.28	9.14	23.28	22.88	14.53	3.46	13.27	20.02	5.28	14.68	24.25	12.74	13.93	15.70	18.97	2.56	1.50	5.35
26	I3_SR1	SilentIntronRegion	0	14.79	7.95	3.68	2.61	6.58	0.32	4.18	7.99	4.79	4.65	1.07	6.36	5.05	0.97	5.66	5.22	1.86	1.45	3.81	4.47	0.06	0.67	1.37
27	I3_AR1	ActiveIntronRegion	0	34.68	16.77	16.66	11.96	19.04	4.77	13.11	30.82	33.67	21.07	4.56	24.46	20.14	9.30	18.35	24.67	16.19	12.35	25.60	23.70	4.29	1.64	6.11
28	I3_AR2	ActiveIntronRegion	0	36.75	9.71	14.57	11.41	19.10	9.71	13.70	47.21	41.52	24.43	6.01	16.34	42.54	8.26	26.48	59.82	29.82	42.01	23.29	43.60	2.79	2.55	14.84
29	I3_SR2	SilentIntronRegion	0	17.54	4.20	8.55	6.92	10.01	2.69	9.13	25.87	28.03	16.41	4.64	4.93	35.97	4.72	18.90	40.21	17.95	24.96	16.59	24.63	4.16	2.28	6.30
30	Ix_AR1	ActiveIntronRegion	0	16.73	6.00	7.70	3.94	19.45	7.45	5.34	5.73	5.27	5.22	0.37	8.93	8.11	3.92	4.84	16.28	6.86	2.32	3.24	7.67	0.42	0.26	4.29
31	Ix_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	16.41	8.73	1.36	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	2.03	4.33	0.00	2.25	0.00	1.74	5.00	2.68	0.00	7.30	0.00	6.30	12.90	4.58	2.53	0.00	0.00	0.00	0.00	0.00
33	ER4a	ExonRegion	0	0.00	0.00	0.51	0.57	0.00	0.00	0.68	0.68	0.59	0.29	0.00	0.68	0.00	1.07	0.70	2.96	0.56	0.00	0.00	0.00	0.00	0.36	0.00
34	E4_Da	NovelBoundary	0	46.08	14.27	37.85	32.90	42.11	12.44	23.01	18.98	26.82	29.28	15.06	18.76	27.92	7.18	28.93	16.49	27.68	4.23	32.47	18.02	0.00	5.20	16.22
35	Ix	Intron	0	8.94	8.48	6.15	4.99	12.07	2.51	8.47	7.65	10.30	6.25	3.31	7.35	18.06	6.66	10.91	17.83	13.95	7.92	8.19	13.00	1.76	2.62	4.03
36	Ix_SR1	SilentIntronRegion	0	8.95	8.49	6.16	4.99	12.09	2.52	8.48	7.66	10.31	6.25	3.31	7.35	18.08	6.67	10.92	17.85	13.97	7.93	8.20	13.02	1.76	2.62	4.03
37	E5_Aa	NovelBoundary	0	25.34	15.85	1.15	15.25	19.44	13.34	13.20	25.01	28.76	16.20	0.00	12.60	54.54	12.18	20.40	57.76	35.62	21.80	8.85	36.82	3.15	3.00	4.35
38	ER5a	ExonRegion	0	8.74	7.26	3.63	2.28	10.91	3.84	5.81	3.02	6.17	2.96	4.73	8.97	11.36	5.85	6.79	10.61	12.96	5.34	5.03	13.59	2.47	2.23	3.89
39	E5_Da	NovelBoundary	0	12.67	5.85	18.01	19.54	0.00	0.00	7.29	9.94	31.28	12.17	7.32	0.00	6.82	2.41	0.00	4.10	16.18	9.12	4.14	15.98	2.41	0.00	3.59
40	Ix	Intron	1	11.31	2.96	3.55	3.95	7.80	0.00	5.14	1.25	9.83	3.32	0.94	10.76	7.50	1.30	14.09	7.22	9.62	3.13	6.19	12.40	2.14	6.07	1.43
41	Ix_SR1	SilentIntronRegion	0	11.31	2.96	3.54	3.95	7.80	0.00	5.14	1.25	9.82	3.32	0.94	10.76	7.50	1.30	14.09	7.22	9.62	3.13	6.19	12.40	2.14	6.07	1.43
42	Ix	Intron	0	12.98	8.56	8.99	6.54	14.67	1.99	7.34	11.33	16.93	8.62	1.20	4.90	11.61	3.90	11.75	10.03	8.59	4.07	8.48	10.94	0.55	1.48	3.46
43	Ix_SR1	SilentIntronRegion	0	18.71	4.86	8.07	5.34	9.91	2.41	7.58	11.08	13.63	7.14	0.69	6.90	10.74	3.94	10.61	7.10	2.37	1.54	5.33	8.13	0.26	1.00	2.46
44	Ix_SR2	SilentIntronRegion	0	10.98	9.87	9.32	6.97	16.34	1.84	7.26	11.42	18.10	9.15	1.37	4.20	11.93	3.89	12.15	11.07	10.77	4.96	9.60	11.93	0.65	1.66	3.81
45	E6_Aa	NovelBoundary	0	6.96	0.00	0.00	3.53	0.00	2.78	0.00	6.12	7.99	1.67	0.00	0.00	0.00	7.42	4.45	0.00	19.35	5.68	4.80	6.20	0.00	0.00	0.00
46	ER6a	ExonRegion	0	0.49	0.47	2.02	1.89	1.81	0.83	1.23	3.18	4.85	4.41	1.35	0.00	0.13	2.80	3.66	6.23	6.53	2.08	2.23	0.12	0.07	0.49	2.86
47	E6_Da	NovelBoundary	0	0.00	2.89	0.00	2.06	0.00	2.84	0.00	0.00	19.73	5.94	4.37	6.30	0.00	10.24	4.45	6.92	0.00	11.23	9.60	5.50	2.66	0.00	0.00
48	E6a_E7a	KnownJunction	0	0.00	0.00	3.31	0.00	0.00	0.00	0.00	8.46	5.67	4.32	0.00	0.00	0.00	10.01	10.01	0.00	4.77	0.00	0.00	0.00	2.35	0.00	0.00
49	I6	Intron	0	6.82	3.65	7.08	4.83	9.98	1.48	3.88	11.40	18.18	9.75	4.46	3.66	8.59	5.74	14.31	8.48	15.10	5.48	5.48	8.25	1.13	1.22	2.36
50	I6_SR2	SilentIntronRegion	0	7.21	3.78	7.49	5.11	10.56	1.56	4.00	12.06	19.23	10.32	4.71	3.87	9.08	6.07	14.59	8.97	15.71	5.80	5.79	8.48	1.19	1.29	2.50
51	E7_Aa	NovelBoundary	0	13.41	2.83	5.00	2.06	18.85	0.00	3.62	2.18	10.07	5.69	0.00	0.00	6.66	12.36	13.35	0.00	9.54	3.69	4.61	12.08	0.00	0.00	0.00
52	ER7a	ExonRegion	0	5.56	4.28	2.52	3.74	5.70	0.00	1.74	7.92	12.43	7.58	0.51	0.94	3.29	5.28	5.14	5.47	8.25	5.30	3.35	3.92	1.08	1.10	1.54