Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF433 Gene 0 33.01 29.32 24.89 21.84 37.99 12.85 22.27 26.14 27.03 23.12 8.38 19.00 25.64 16.31 35.43 33.26 36.89 16.59 22.32 27.14 5.04 7.35 10.41 2 411841 Transcript 0 0.95 3.18 0.99 1.39 2.10 0.72 2.07 3.41 3.43 1.76 1.52 1.61 1.54 2.77 1.92 5.25 4.34 4.46 2.03 4.48 1.62 0.82 1.58 3 344980 Transcript 0 2.26 0.20 1.39 0.00 2.76 0.00 2.34 0.00 1.36 0.57 0.97 0.00 1.88 3.33 2.42 4.00 4.53 2.60 3.20 1.06 2.44 0.00 0.00 4 419886 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.26 1.95 0.00 6.33 2.12 0.00 8.37 4.77 2.45 4.05 0.00 2.53 0.00 3.67 5 455504 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 478765 Transcript 0 33.67 18.55 19.33 13.31 21.78 4.31 15.51 17.76 17.04 14.61 8.11 10.87 19.52 8.69 17.68 23.74 12.05 7.34 12.55 17.28 2.26 2.50 6.53 7 ER1a ExonRegion 0 0.07 0.76 0.00 0.00 0.00 1.09 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.76 4.44 0.00 0.00 0.00 0.00 0.00 0.00 8 ER1b ExonRegion 0 5.35 18.78 0.00 0.00 7.87 18.66 9.70 0.00 0.00 1.99 0.00 0.00 0.00 0.86 0.00 4.28 11.65 2.01 1.78 0.44 0.00 0.00 0.00 9 E1_Ac KnownBoundary 0 7.33 32.17 3.43 1.66 17.06 19.42 21.68 0.00 1.48 1.67 0.00 0.00 0.00 5.89 0.00 8.12 0.00 9.91 0.00 0.00 0.00 0.00 0.00 10 E1_Ad KnownBoundary 0 0.00 8.75 0.00 5.03 4.33 13.46 8.97 0.00 1.22 6.07 2.05 0.00 0.00 0.00 0.00 4.36 13.65 4.60 9.60 2.81 0.00 0.00 0.00 11 ER1c ExonRegion 0 6.95 26.15 0.00 0.00 10.70 26.98 13.62 0.00 0.18 4.10 0.55 0.00 0.00 1.62 0.00 2.97 10.85 3.70 3.19 2.13 0.00 0.00 0.00 12 ER1d ExonRegion 0 3.98 11.11 0.00 2.35 8.11 10.50 5.93 2.02 2.57 4.28 0.86 0.00 0.00 2.50 1.60 4.21 11.10 3.74 2.65 1.40 0.20 0.00 3.40 13 E1a_E2a KnownJunction 0 0.00 3.03 0.00 0.00 4.16 0.00 0.00 0.00 2.75 2.87 2.16 0.00 0.00 2.12 0.00 0.00 8.79 2.57 8.09 0.00 2.66 0.00 0.00 14 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1a_E4c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.47 0.00 3.25 9.07 2.24 3.86 0.00 4.88 0.00 0.00 16 E2_Aa NovelBoundary 0 10.96 9.08 16.29 11.85 12.90 4.66 20.36 14.38 21.93 11.36 2.16 0.00 23.38 4.71 4.45 12.90 4.77 26.53 0.00 12.66 3.03 0.00 0.00 17 ER2a ExonRegion 1 0.00 1.56 0.00 0.00 1.88 0.00 0.00 0.00 0.74 4.20 1.69 0.00 7.48 2.35 6.98 1.08 15.24 3.42 7.93 2.35 3.75 0.00 0.75 18 E2_Da NovelBoundary 0 6.89 21.64 15.58 12.12 12.05 0.00 20.58 18.36 19.33 10.74 0.00 0.00 8.28 9.54 4.45 28.28 9.54 19.40 12.24 8.05 0.00 6.25 0.00 19 E2a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E2a_E4d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.26 1.95 0.00 6.33 2.12 0.00 8.37 4.77 2.45 4.05 0.00 2.53 0.00 3.67 21 Ix Intron 0 12.98 8.56 8.99 6.54 14.67 1.99 7.34 11.33 16.93 8.62 1.20 4.90 11.61 3.90 11.75 10.03 8.59 4.07 8.48 10.94 0.55 1.48 3.46 22 Ix_SR2 SilentIntronRegion 0 10.98 9.87 9.32 6.97 16.34 1.84 7.26 11.42 18.10 9.15 1.37 4.20 11.93 3.89 12.15 11.07 10.77 4.96 9.60 11.93 0.65 1.66 3.81 23 Ix_SR1 SilentIntronRegion 0 18.71 4.86 8.07 5.34 9.91 2.41 7.58 11.08 13.63 7.14 0.69 6.90 10.74 3.94 10.61 7.10 2.37 1.54 5.33 8.13 0.26 1.00 2.46 24 Ix Intron 1 11.31 2.96 3.55 3.95 7.80 0.00 5.14 1.25 9.83 3.32 0.94 10.76 7.50 1.30 14.09 7.22 9.62 3.13 6.19 12.40 2.14 6.07 1.43 25 Ix_SR1 SilentIntronRegion 0 11.31 2.96 3.54 3.95 7.80 0.00 5.14 1.25 9.82 3.32 0.94 10.76 7.50 1.30 14.09 7.22 9.62 3.13 6.19 12.40 2.14 6.07 1.43 26 E3_Aa NovelBoundary 0 14.22 9.41 13.78 9.16 16.21 2.61 15.46 13.02 23.18 11.34 7.05 6.15 0.00 9.30 4.45 43.15 17.48 28.19 9.04 21.54 2.84 5.63 12.04 27 ER3a ExonRegion 0 3.74 11.97 3.94 5.58 8.40 1.80 8.05 13.63 13.70 7.03 6.07 6.44 6.17 8.60 7.70 19.24 12.94 17.83 8.12 17.94 6.49 3.27 6.34 28 E3_Da NovelBoundary 1 20.37 15.85 10.82 4.10 0.00 0.00 9.63 13.64 27.03 11.39 5.11 0.00 27.27 17.31 18.17 49.22 8.42 25.99 22.12 21.60 8.28 2.51 7.51 29 E3a_E4d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 Ix Intron 0 8.94 8.48 6.15 4.99 12.07 2.51 8.47 7.65 10.30 6.25 3.31 7.35 18.06 6.66 10.91 17.83 13.95 7.92 8.19 13.00 1.76 2.62 4.03 31 Ix_SR1 SilentIntronRegion 0 8.95 8.49 6.16 4.99 12.09 2.52 8.48 7.66 10.31 6.25 3.31 7.35 18.08 6.67 10.92 17.85 13.97 7.93 8.20 13.02 1.76 2.62 4.03 32 E4_Aa NovelBoundary 0 62.31 26.97 27.73 13.82 11.21 2.10 28.93 23.04 32.26 21.87 0.00 0.00 19.48 9.06 23.12 18.80 17.48 12.44 12.24 15.02 5.56 5.45 8.71 33 ER4a ExonRegion 0 33.67 18.55 19.33 13.31 21.78 4.31 15.51 17.76 17.04 14.61 8.11 10.87 19.52 8.69 17.68 23.74 12.05 7.34 12.55 17.28 2.26 2.50 6.53 34 E4_Ab KnownBoundary 0 0.00 16.51 1.27 10.19 12.99 5.11 8.04 13.18 9.23 11.93 2.68 6.30 6.82 4.83 14.96 33.58 13.37 3.65 0.00 14.45 0.00 0.00 0.00 35 ER4b ExonRegion 0 6.94 13.77 12.87 7.63 3.05 0.30 8.82 7.57 8.68 13.78 4.06 15.62 13.24 8.68 11.13 19.11 14.00 5.17 7.78 11.80 1.28 0.69 3.94 36 E4_Ac KnownBoundary 0 18.45 9.67 12.86 3.36 3.82 0.00 6.40 4.39 5.38 5.18 2.32 0.00 0.00 0.00 19.66 19.14 4.49 2.57 9.13 9.01 3.15 0.00 3.76 37 E4_Ad KnownBoundary 0 21.86 12.83 1.66 4.13 16.30 0.00 13.03 4.35 5.50 2.82 0.00 0.00 0.00 2.47 6.06 12.65 12.81 4.19 26.54 2.88 3.15 6.12 4.35 38 ER4c ExonRegion 0 25.16 12.65 11.30 6.21 6.24 0.00 11.92 3.46 7.69 7.90 1.93 12.99 19.80 14.08 23.21 24.11 14.67 3.90 22.65 8.27 4.65 4.17 8.48 39 ER4d ExonRegion 0 10.62 16.51 12.97 5.33 18.39 8.55 9.74 3.03 5.17 10.53 0.55 2.57 13.56 6.35 14.28 13.65 14.51 6.42 10.91 6.38 3.84 1.24 8.14 40 E4_Da NovelBoundary 0 2.96 20.00 24.57 11.22 22.67 23.40 11.70 4.56 6.74 15.66 5.32 0.00 6.82 4.53 18.67 16.41 16.55 15.63 11.77 15.28 7.85 3.00 0.00 41 E4_Db NovelBoundary 0 0.00 6.51 13.93 7.19 19.44 0.00 1.77 12.32 9.23 4.65 2.37 0.00 0.00 2.35 11.50 3.76 9.44 6.59 8.75 5.82 2.41 0.00 0.00 42 E4b_E5a KnownJunction 0 9.93 38.48 16.29 10.95 93.80 64.96 23.89 6.41 7.78 6.42 0.00 5.40 15.10 9.36 14.09 37.77 35.34 22.30 20.61 21.28 9.14 3.12 12.89 43 ER4e ExonRegion 0 6.18 29.12 16.81 9.10 65.72 41.81 17.11 7.47 5.43 8.12 1.93 2.77 14.45 7.15 15.90 34.71 29.84 19.51 18.73 21.11 8.90 2.58 8.81 44 Ix_AR2 ActiveIntronRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.41 8.73 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 Ix_AR1 ActiveIntronRegion 0 16.73 6.00 7.70 3.94 19.45 7.45 5.34 5.73 5.27 5.22 0.37 8.93 8.11 3.92 4.84 16.28 6.86 2.32 3.24 7.67 0.42 0.26 4.29 46 E5_Aa NovelBoundary 0 38.82 23.29 22.12 16.51 29.29 0.00 15.50 18.65 20.40 14.56 0.00 19.81 20.45 2.88 19.66 8.29 8.23 4.39 0.00 16.04 5.81 0.00 0.00 47 ER5a ExonRegion 1 21.23 35.47 12.90 11.22 47.81 26.09 20.77 16.46 9.27 12.79 1.87 1.49 18.68 19.89 32.10 23.48 44.75 15.96 20.73 14.82 4.37 8.37 11.65 48 E5_Da NovelBoundary 0 31.04 2.50 20.05 7.99 28.61 0.00 10.78 25.75 22.14 16.68 2.68 0.00 6.49 0.00 4.45 3.59 3.74 4.27 3.86 10.99 0.00 0.00 0.00 49 E5a_E6a KnownJunction 1 30.23 40.58 24.16 17.08 28.01 29.47 24.51 22.18 11.46 17.78 9.63 0.00 6.82 9.71 64.28 26.32 70.22 7.71 21.27 14.96 8.40 5.69 15.62 50 E6_Aa NovelBoundary 0 23.71 3.35 7.48 10.85 16.13 2.56 12.59 12.36 14.38 8.84 2.47 6.30 13.64 4.83 32.63 14.61 8.51 12.06 9.13 20.77 0.00 0.00 0.00 51 ER6a ExonRegion 0 55.17 37.60 28.68 27.98 47.71 16.55 32.25 23.25 22.27 24.09 12.99 15.46 27.51 21.24 35.38 41.83 56.45 16.77 23.26 28.88 4.69 11.59 13.99 52 E6_Da KnownBoundary 0 16.74 52.75 31.67 33.33 45.16 10.45 20.23 32.45 37.85 30.19 9.27 25.66 51.94 17.19 76.40 44.77 69.00 7.42 27.86 32.28 4.82 18.74 8.11 53 ER6b ExonRegion 0 43.01 38.87 35.08 31.92 53.28 16.91 29.36 37.13 39.03 32.67 10.94 26.63 32.78 21.10 50.75 42.89 50.51 21.25 30.66 37.15 5.82 10.40 13.11 54 E6_Db KnownBoundary 0 32.75 18.15 22.21 13.38 10.78 5.00 16.16 33.35 13.63 15.10 11.42 18.91 39.12 7.42 15.45 20.08 23.19 31.34 18.54 22.95 0.00 0.00 4.27 55 ER6c ExonRegion 1 46.34 13.48 16.96 6.84 16.93 6.30 20.19 18.60 16.73 12.38 4.29 33.56 60.35 25.32 36.46 40.24 29.07 17.58 21.31 21.33 10.96 7.49 12.40 56 ER6d ExonRegion 0 4.52 0.41 2.78 0.00 5.53 0.00 4.68 0.00 2.72 1.15 1.93 0.00 3.75 1.19 4.84 4.76 0.00 2.96 2.55 2.13 0.00 0.00 0.00