Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF490 Gene 0 26.26 33.13 35.73 26.82 31.65 21.57 30.04 36.01 35.92 40.35 22.04 27.81 30.31 25.19 34.04 52.52 29.45 33.66 22.09 44.17 16.28 11.84 21.49 2 465656 Transcript 0 6.13 4.26 4.05 3.33 5.16 2.02 4.34 2.11 1.61 1.26 0.66 3.77 3.48 7.27 9.70 4.67 3.67 1.70 1.71 0.71 0.09 1.10 1.74 3 414906 Transcript 0 3.43 0.66 0.54 0.00 6.54 0.00 3.88 0.00 1.01 0.94 14.06 3.50 3.27 14.41 9.51 4.89 4.28 0.74 2.58 4.39 4.08 3.44 3.46 4 311437 Transcript 0 18.11 23.03 30.20 23.32 21.23 13.84 19.43 28.26 29.08 46.32 24.53 15.62 19.02 19.43 28.33 69.25 23.23 38.85 29.90 51.69 16.21 7.52 31.64 5 440366 Transcript 0 0.66 2.23 5.68 0.69 1.67 0.00 1.45 2.01 2.02 2.91 0.00 1.65 3.15 0.62 2.06 4.65 1.55 3.83 0.00 6.57 1.38 0.33 0.92 6 IG37 Intergenic 0 4.01 0.64 5.00 2.42 2.16 2.52 2.28 4.88 3.23 1.74 0.68 2.31 2.20 8.43 10.55 16.80 6.84 2.42 1.01 1.34 0.70 0.29 1.65 7 IG37_SR1 SilentIntergenicRegion 0 4.01 0.64 5.00 2.42 2.16 2.52 2.28 4.89 3.23 1.74 0.68 2.31 2.20 8.43 10.56 16.81 6.84 2.42 1.01 1.35 0.70 0.29 1.65 8 ER1a ExonRegion 0 0.00 0.00 0.18 0.32 0.24 0.00 0.00 0.46 0.40 0.00 0.00 0.00 0.00 0.81 0.43 1.05 1.65 0.05 0.00 0.00 0.00 0.00 0.00 9 E1_Da NovelBoundary 0 3.56 0.00 7.78 3.66 0.00 0.00 2.25 4.39 4.54 1.45 0.00 0.00 0.00 0.00 6.30 24.52 3.83 3.36 0.00 0.00 0.00 0.00 3.24 10 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 2.83 0.00 3.25 4.49 0.00 0.00 0.00 0.00 0.00 0.00 11 E2_Aa NovelBoundary 0 66.75 23.42 34.42 12.15 37.44 0.00 15.72 23.17 14.96 7.55 0.00 0.00 13.64 17.13 8.90 14.95 12.90 9.91 7.34 5.11 0.00 6.00 4.35 12 ER2a ExonRegion 0 9.18 5.64 12.75 7.63 9.32 5.10 5.62 8.71 4.44 5.81 1.19 7.71 6.05 11.80 17.04 20.91 12.78 5.68 5.83 1.97 0.68 0.64 3.63 13 E2_Da NovelBoundary 0 54.82 6.18 28.68 12.89 24.96 10.33 26.23 24.93 13.17 9.29 2.42 0.00 0.00 8.59 15.82 39.65 12.16 23.59 25.60 14.51 7.54 0.00 18.95 14 E2a_E3a KnownJunction 0 0.00 0.00 5.88 1.53 4.07 0.00 4.50 0.00 0.00 0.00 0.00 0.00 0.00 10.65 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E3_Aa NovelBoundary 0 22.00 17.76 22.86 17.18 34.80 8.12 12.50 5.09 6.89 6.42 2.58 24.61 6.82 9.12 8.90 31.96 9.54 5.14 0.00 3.13 0.00 0.00 4.35 16 ER3a ExonRegion 1 29.01 23.96 7.49 14.14 16.81 8.39 19.28 4.85 4.73 1.15 1.26 9.32 10.22 7.77 28.49 7.77 6.90 4.83 4.33 1.39 0.00 8.12 3.84 17 E3_Da NovelBoundary 0 7.56 17.04 36.19 20.68 15.11 0.00 14.62 12.90 15.62 6.42 0.00 6.30 14.61 7.06 18.30 14.78 3.93 1.70 4.14 17.00 0.00 2.69 4.35 18 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 I3 Intron 0 76.08 40.15 31.81 36.70 57.22 20.62 37.29 27.59 22.17 26.44 12.97 28.60 32.67 26.56 42.56 41.57 23.02 17.03 22.95 19.55 12.93 23.51 20.60 20 I3_SR1 SilentIntronRegion 0 26.74 19.28 16.04 13.56 25.37 10.30 18.87 9.67 7.68 8.66 1.10 15.42 12.21 6.39 15.79 13.73 8.55 6.56 9.08 6.91 1.76 3.27 7.38 21 I3_AR1 ActiveIntronRegion 0 134.72 63.18 49.56 57.54 84.23 29.59 50.49 42.89 35.83 40.99 22.35 35.76 49.18 42.21 68.68 66.64 37.43 27.69 36.31 31.84 22.22 41.04 30.81 22 I3_SR2 SilentIntronRegion 0 22.65 21.76 17.10 27.16 48.06 17.16 37.69 22.15 14.77 22.53 11.08 34.20 28.72 24.06 26.86 30.10 13.87 9.84 15.21 12.19 10.10 16.73 19.07 23 E4_Aa NovelBoundary 0 13.71 0.00 3.28 10.42 13.41 0.00 2.12 8.13 3.59 2.42 0.00 0.00 6.82 2.47 14.46 0.00 4.30 4.60 8.47 5.69 6.30 0.00 0.00 24 ER4a ExonRegion 0 10.87 4.48 6.07 3.04 10.86 2.69 5.34 2.90 2.11 3.12 2.84 13.08 11.57 24.30 27.18 4.36 3.56 3.00 3.51 2.31 0.00 0.03 6.46 25 E4a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E5_Aa NovelBoundary 0 3.19 3.35 1.83 0.00 0.00 2.78 0.00 2.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.06 0.00 3.00 0.00 0.00 11.10 27 ER5a ExonRegion 0 10.57 7.26 9.34 10.28 21.27 24.76 20.04 14.49 14.45 29.38 25.59 5.63 1.64 15.52 22.76 49.15 24.01 27.14 22.28 34.65 14.62 3.97 31.74 28 E5_Da NovelBoundary 0 0.00 0.00 1.83 3.76 0.00 0.00 0.00 2.55 1.62 1.13 2.68 0.00 0.00 4.83 19.78 8.29 12.25 6.47 4.80 3.26 6.05 0.00 7.51 29 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 30.43 0.00 0.00 12.24 0.00 0.00 3.83 0.00 0.00 2.88 0.00 6.25 4.18 30 E5a_E7a KnownJunction 1 3.78 2.70 14.87 13.22 4.33 2.90 4.06 10.43 13.08 43.19 24.43 0.00 0.00 11.01 14.83 76.99 13.46 34.74 32.66 50.62 12.05 0.00 38.50 31 E6_Aa NovelBoundary 0 6.37 0.00 1.48 1.73 0.00 0.00 4.06 0.00 0.00 0.00 2.11 18.01 0.00 0.00 8.78 0.00 0.00 0.00 4.80 0.00 0.00 0.00 8.62 32 ER6a ExonRegion 0 10.28 1.98 0.00 0.00 7.64 0.00 7.15 0.00 1.79 1.44 11.74 4.49 3.31 15.98 10.86 10.90 4.62 2.23 7.74 4.21 3.27 4.09 6.21 33 E6_Da NovelBoundary 0 185.66 3.35 1.42 2.06 8.40 5.79 15.50 1.89 3.50 1.48 0.00 12.45 0.00 0.00 4.45 0.00 0.00 0.00 8.09 8.63 0.00 0.00 0.00 34 E6a_E7a KnownJunction 0 0.00 0.00 1.63 0.00 11.97 0.00 4.50 0.00 0.00 1.37 0.00 6.00 6.49 15.01 17.68 3.76 4.39 0.00 0.00 6.07 8.96 0.00 0.00 35 E7_Aa NovelBoundary 0 3.26 0.00 3.05 1.86 4.33 0.00 0.00 4.68 1.77 1.67 2.68 0.00 13.15 2.47 25.34 10.68 4.21 2.28 9.60 3.00 0.00 0.00 3.41 36 ER7a ExonRegion 0 7.48 0.45 6.94 12.14 9.34 2.77 7.38 9.83 14.82 31.37 15.08 10.78 4.79 16.39 16.12 58.85 29.12 19.46 18.90 36.55 14.01 4.63 15.66 37 E7_Da NovelBoundary 0 0.00 2.50 8.04 13.09 12.05 5.11 7.95 0.00 3.44 1.64 4.79 0.00 0.00 4.89 20.40 25.81 13.46 5.10 12.33 19.69 11.37 0.00 7.17 38 E7a_E9a KnownJunction 0 18.23 0.00 4.23 12.09 3.99 5.79 12.32 12.20 15.39 20.07 14.90 5.85 25.49 14.36 8.90 54.00 28.70 12.60 28.05 31.19 4.76 13.35 13.06 39 E8_Aa NovelBoundary 0 13.85 6.45 9.93 1.50 35.74 0.00 4.46 12.16 4.48 11.09 0.00 7.05 0.00 0.00 8.90 4.02 9.44 4.19 3.58 12.53 3.15 0.00 0.00 40 ER8a ExonRegion 0 1.32 4.45 7.10 1.37 3.35 0.00 2.90 4.03 4.05 4.43 0.00 3.29 6.30 1.24 4.11 9.30 3.10 5.88 0.00 10.21 2.76 0.65 1.84 41 E8_Da NovelBoundary 0 0.00 0.00 8.16 4.00 0.00 0.00 4.50 0.00 5.96 6.85 2.53 0.00 0.00 2.24 0.00 3.50 16.64 2.40 0.00 2.56 8.40 0.00 0.00 42 E8a_E9a KnownJunction 0 0.00 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.78 0.00 2.94 0.00 0.00 0.00 43 E9_Aa NovelBoundary 0 17.56 5.00 3.49 4.06 4.16 5.34 1.85 0.00 1.59 3.68 2.47 12.60 0.00 2.06 20.15 7.01 8.42 4.35 4.33 8.18 5.50 0.00 3.24 44 ER9a ExonRegion 0 5.41 7.77 21.99 23.21 20.74 33.90 22.67 27.22 23.52 33.83 19.65 19.24 18.30 20.62 8.14 34.10 14.03 25.84 16.32 50.71 8.51 8.22 23.29 45 E9_Da KnownBoundary 0 18.15 22.10 46.98 52.01 64.26 128.22 86.87 80.96 47.08 92.97 37.22 69.17 26.62 33.49 39.56 52.81 36.09 84.61 46.31 90.31 12.29 8.39 27.74 46 ER9b ExonRegion 0 7.62 17.93 19.27 17.79 36.24 57.58 43.91 27.09 27.91 43.08 29.20 41.25 13.47 36.44 19.20 34.96 42.01 32.39 18.19 54.04 11.10 7.12 15.70 47 E9b_E10a KnownJunction 0 13.26 25.52 20.34 13.85 32.17 24.82 38.33 10.35 30.41 41.53 22.53 17.26 0.00 26.78 23.73 32.47 53.95 19.15 8.75 52.48 5.99 6.25 6.40 48 ER10a ExonRegion 0 20.47 23.57 17.60 24.84 30.97 31.02 32.88 18.02 33.00 38.22 32.35 18.03 20.45 34.96 12.51 37.96 36.15 18.05 10.08 35.54 6.00 9.94 19.88 49 E10a_E11a KnownJunction 0 12.74 23.09 26.82 31.50 19.78 16.75 28.44 30.60 36.46 33.31 29.22 18.01 6.49 35.91 18.67 62.97 24.50 23.09 17.88 31.70 0.00 11.94 4.10 50 ER11a ExonRegion 0 17.61 21.47 27.44 26.60 22.07 15.61 33.81 27.59 34.94 38.36 28.22 45.07 25.31 32.03 16.93 55.15 38.91 17.28 13.36 38.13 10.01 8.55 20.93 51 E11_Da KnownBoundary 0 46.30 25.98 32.88 35.86 39.98 14.99 69.38 21.32 35.07 35.83 40.01 36.16 18.99 39.20 27.69 77.67 60.68 9.99 35.67 48.32 23.41 8.21 18.78 52 ER11b ExonRegion 0 25.94 20.81 32.29 21.18 32.70 21.53 41.49 27.98 33.31 34.15 30.51 54.78 37.24 29.50 22.62 60.10 45.89 15.48 16.74 53.49 15.35 9.96 17.46 53 E11_Db KnownBoundary 0 13.41 23.94 30.60 13.68 46.35 24.25 48.40 25.47 22.71 48.22 31.80 49.67 73.05 25.72 27.20 61.78 53.95 14.14 20.71 49.02 25.33 11.94 24.33 54 ER11c ExonRegion 0 32.44 43.37 45.53 33.42 38.13 24.78 34.80 46.10 45.09 49.45 24.63 31.23 38.05 27.85 41.83 61.51 32.99 42.97 27.14 52.75 20.37 15.04 24.79 55 IG36_SR3 SilentIntergenicRegion 0 9.35 15.28 12.71 1.39 10.14 11.69 9.70 11.01 10.37 15.04 5.53 0.00 8.07 10.05 8.23 11.40 3.38 7.09 8.22 30.48 3.48 2.71 9.42 56 IG36_AR2 ActiveIntergenicRegion 0 12.24 39.22 35.35 20.89 23.54 19.43 20.01 26.85 24.56 31.75 9.37 4.50 8.66 17.76 22.72 34.47 18.56 29.40 18.66 42.89 8.85 3.47 13.29 57 IG36_AR1 ActiveIntergenicRegion 0 44.89 44.91 50.62 34.85 76.10 43.27 51.54 46.25 29.98 41.95 14.89 10.08 17.95 15.22 28.14 33.30 12.32 17.16 28.85 43.78 6.65 9.60 7.93