Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF440 Gene 0 45.21 38.58 37.55 33.03 45.93 14.40 42.17 24.92 28.81 39.24 8.64 39.93 32.06 27.56 27.35 47.34 33.55 34.99 18.33 46.42 12.40 24.23 25.34 2 304060 Transcript 0 20.26 17.94 17.36 15.01 24.49 9.68 20.30 10.31 12.67 23.01 5.88 20.61 13.15 14.22 10.84 24.37 25.71 15.26 10.07 27.40 7.17 11.16 12.72 3 457526 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 4.11 0.00 0.00 0.00 0.00 7.65 0.00 4 427505 Transcript 0 0.00 6.05 0.00 1.76 0.00 0.00 0.00 0.00 1.36 0.00 4.95 0.00 6.82 0.00 0.00 0.00 8.51 0.00 0.00 5.75 0.00 0.00 0.00 5 414255 Transcript 0 25.38 12.33 9.71 6.30 11.61 1.94 15.35 9.08 8.97 10.14 1.03 5.87 11.72 8.73 14.59 30.51 16.44 35.24 16.21 22.49 15.77 7.46 16.77 6 ER1a ExonRegion 0 7.41 7.63 0.61 0.00 18.06 12.84 12.25 1.73 0.31 1.15 0.00 0.00 0.00 1.62 0.00 3.72 0.00 3.70 6.37 5.85 2.20 2.08 2.20 7 ER1b ExonRegion 0 14.22 17.66 6.41 1.27 39.53 39.60 41.58 3.40 6.83 14.51 2.85 0.00 2.06 19.55 18.68 31.55 19.98 33.52 13.97 30.50 10.86 4.97 21.79 8 E1_Ac KnownBoundary 0 21.63 13.42 12.48 3.66 44.74 40.20 38.60 6.49 13.19 29.01 10.11 5.70 6.82 15.36 8.90 37.26 18.05 72.09 9.13 46.92 18.59 2.69 19.55 9 ER1c ExonRegion 0 2.26 2.55 8.75 1.21 6.41 4.69 4.38 4.30 6.63 14.61 8.10 6.04 6.68 5.81 3.67 12.76 19.37 24.94 4.84 15.94 9.36 4.21 7.18 10 E1_Da NovelBoundary 0 0.00 0.00 12.68 0.00 0.00 0.00 4.11 1.56 2.49 3.09 0.00 0.00 0.00 2.47 0.00 0.00 8.42 10.69 4.71 16.68 14.76 0.00 4.35 11 E1a_E2b KnownJunction 0 0.00 6.05 0.00 1.76 0.00 0.00 0.00 0.00 1.36 0.00 4.95 0.00 6.82 0.00 0.00 0.00 8.51 0.00 0.00 5.75 0.00 0.00 0.00 12 E1a_E2c KnownJunction 0 0.00 0.00 5.23 5.73 0.00 0.00 1.85 0.00 6.42 24.34 8.05 18.46 6.49 11.36 0.00 19.74 42.26 4.44 3.95 25.89 7.48 5.08 10.24 13 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 4.11 0.00 0.00 0.00 0.00 7.65 0.00 14 I1 Intron 0 12.68 10.13 8.76 8.29 7.95 1.47 10.83 6.43 8.87 9.07 1.07 9.57 9.73 4.92 7.89 21.69 11.53 17.10 7.85 15.94 8.06 4.86 10.16 15 I1_SR1 SilentIntronRegion 0 5.68 7.66 6.99 6.68 8.00 1.52 10.23 5.08 6.54 7.71 0.61 9.84 7.68 4.66 7.64 19.45 5.90 8.25 3.79 12.63 4.58 3.60 9.21 16 I1_AR2 ActiveIntronRegion 0 7.88 9.78 3.75 6.23 3.20 2.58 11.18 4.41 6.55 8.13 1.10 3.85 8.77 3.63 11.44 23.78 13.10 15.49 8.91 14.77 11.36 1.66 12.85 17 I1_SR2 SilentIntronRegion 0 17.20 15.64 13.83 13.51 9.57 2.58 16.52 9.73 18.19 14.91 2.88 13.15 12.75 8.03 10.80 33.33 18.84 30.59 18.02 26.04 18.46 8.71 15.46 18 I1_AR3 ActiveIntronRegion 0 14.71 11.63 12.87 13.54 11.14 2.17 15.70 10.09 10.99 12.45 0.55 9.82 14.25 6.48 10.03 34.26 24.12 34.69 9.41 26.33 11.55 7.25 14.71 19 E2_Aa NovelBoundary 1 118.54 135.44 135.74 116.54 141.26 69.11 165.70 115.46 134.98 95.87 90.18 43.96 7.79 26.19 45.74 143.81 168.49 217.71 93.93 195.65 113.67 95.03 120.79 20 ER2a ExonRegion 0 25.38 12.33 9.71 6.30 11.61 1.94 15.35 9.08 8.97 10.14 1.03 5.87 11.72 8.73 14.59 30.51 16.44 35.24 16.21 22.49 15.77 7.46 16.77 21 E2_Ab KnownBoundary 0 10.15 0.00 12.36 4.89 8.66 0.00 1.77 7.89 9.64 7.39 0.00 0.00 0.00 18.48 4.45 19.57 12.81 22.92 3.67 17.45 4.76 2.39 8.62 22 E2_Ac KnownBoundary 0 58.83 45.12 9.40 15.05 42.28 0.00 34.80 34.30 32.81 24.10 10.32 0.00 0.00 14.42 9.02 44.77 45.16 27.69 25.32 37.20 13.59 10.23 8.19 23 ER2b ExonRegion 0 11.99 6.10 15.79 14.84 10.70 0.00 9.41 13.64 18.94 17.20 5.15 6.25 7.82 22.56 7.41 32.69 24.94 25.87 2.83 31.21 16.16 6.95 12.07 24 ER2c ExonRegion 0 13.27 11.62 21.46 15.62 14.16 6.75 14.30 15.08 23.61 39.79 6.78 9.48 9.27 20.37 9.03 53.17 29.18 57.18 8.95 34.80 14.92 15.79 30.25 25 E2a_E3a KnownJunction 0 24.60 18.88 24.57 16.88 66.64 33.22 24.78 12.82 23.73 36.56 4.63 25.51 6.17 4.77 17.18 20.17 43.29 45.89 8.66 12.53 6.12 13.59 10.67 26 E3_Aa NovelBoundary 0 3.78 0.00 6.89 3.70 14.52 0.00 11.04 4.81 0.00 4.75 0.00 0.00 0.00 0.00 4.45 0.00 13.37 0.00 0.00 3.13 0.00 6.18 3.93 27 ER3a ExonRegion 0 26.47 20.67 19.18 18.16 75.01 53.15 86.56 12.61 26.42 40.35 7.45 28.53 44.36 25.24 14.55 48.14 47.78 31.23 16.19 23.51 20.74 31.70 23.06 28 E3a_E4a KnownJunction 0 20.52 22.76 17.59 20.28 13.92 2.38 66.55 10.88 24.97 41.39 7.84 18.46 34.09 26.31 9.64 44.95 39.64 9.74 4.42 29.08 11.37 32.15 30.99 29 ER4a ExonRegion 1 31.00 28.44 23.02 25.75 18.62 5.95 33.42 21.63 34.62 36.42 5.39 48.75 62.16 31.21 15.34 57.14 38.70 22.76 16.91 48.68 13.34 30.18 37.87 30 E4_Da KnownBoundary 0 238.49 95.31 93.85 74.82 149.07 60.99 175.50 94.72 113.80 141.13 41.17 178.11 125.80 81.64 85.05 235.84 168.58 89.50 48.00 197.06 45.28 65.15 112.94 31 E4_Db KnownBoundary 0 205.22 66.50 55.53 98.89 133.79 28.51 147.42 78.49 104.86 72.96 20.48 57.77 56.33 52.39 31.15 130.48 136.14 70.97 64.47 143.88 18.53 78.01 58.99 32 ER4b ExonRegion 1 22.09 20.95 20.51 24.41 46.07 7.49 44.55 21.72 34.74 36.30 7.14 83.20 53.43 31.92 23.46 66.03 38.32 10.28 15.79 71.69 15.91 24.55 53.75 33 ER4c ExonRegion 0 32.49 26.36 13.80 28.07 28.67 10.48 45.04 16.05 30.42 38.41 12.13 60.90 32.02 32.40 17.65 40.32 37.61 15.56 15.66 46.24 12.62 25.66 20.31 34 E4_Dc KnownBoundary 0 35.34 18.55 29.74 49.71 31.49 8.57 73.71 60.67 54.02 64.31 7.32 99.48 67.69 18.72 24.85 51.35 37.68 41.70 27.48 113.45 3.15 28.29 12.98 35 ER4d ExonRegion 0 53.36 46.20 46.25 39.30 55.41 16.21 46.79 29.20 31.28 43.54 9.57 43.36 32.97 29.68 32.51 49.65 34.87 37.66 19.89 50.45 11.83 26.30 25.72