Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ANKLE1 Gene 0 16.94 9.67 35.71 16.39 9.59 9.21 10.28 20.53 18.11 21.97 2.57 29.16 12.63 133.51 106.19 99.86 61.05 26.86 10.95 22.12 5.27 6.84 8.19 2 404261 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 291449 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 438921 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 4.36 4.11 1.70 0.00 0.00 0.00 0.00 0.00 5 433424 Transcript 0 0.00 0.00 5.50 0.00 0.00 0.00 0.00 4.11 6.19 1.02 0.00 7.50 0.00 2.47 0.00 11.62 8.51 2.57 0.00 0.00 0.00 0.00 0.00 6 392729 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 404085 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 394458 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1a ExonRegion 0 0.00 0.00 6.19 0.22 0.00 0.00 0.14 1.60 2.47 1.54 0.00 0.00 0.00 1.54 0.00 0.65 0.30 1.21 3.19 0.39 0.00 0.00 2.51 10 E1_Ab KnownBoundary 0 0.00 0.00 19.28 3.36 0.00 0.00 0.00 4.44 7.06 9.24 0.00 0.00 0.00 2.35 0.00 0.00 0.00 5.93 0.00 0.00 0.00 0.00 0.00 11 ER1b ExonRegion 0 3.03 3.59 14.28 5.18 0.03 1.40 2.42 5.60 5.74 4.51 0.00 0.00 0.00 7.42 3.34 5.89 5.27 8.39 8.12 2.45 0.63 1.22 2.59 12 E1_Ac KnownBoundary 0 0.00 0.00 11.97 5.83 3.31 6.81 2.25 6.86 1.48 4.19 0.00 0.00 0.00 28.90 5.56 12.05 12.53 6.26 8.75 5.43 0.00 0.00 3.67 13 ER1c ExonRegion 0 1.47 2.23 7.81 3.05 3.72 4.33 2.41 12.39 3.02 2.48 0.00 0.00 0.00 47.26 52.87 50.90 33.10 5.52 12.48 2.33 1.56 2.49 1.10 14 E1_Da KnownBoundary 0 2.74 3.03 9.49 3.53 0.00 0.00 0.00 6.70 6.02 3.04 0.00 6.30 0.00 51.92 50.93 85.62 49.28 9.62 8.28 3.07 0.00 2.76 4.27 15 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER1d ExonRegion 0 2.57 0.92 6.61 2.06 0.89 0.00 1.36 4.35 2.77 2.82 0.00 0.00 0.00 34.75 25.23 33.59 23.61 6.44 6.37 3.22 0.07 0.88 2.14 17 E1b_E2a KnownJunction 0 6.45 0.00 5.32 1.56 3.31 0.00 1.94 1.56 2.78 1.58 0.00 0.00 0.00 10.95 19.66 8.54 13.65 4.48 0.00 2.81 0.00 0.00 0.00 18 E1b_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER2a ExonRegion 0 4.23 0.68 6.54 1.36 2.68 0.00 1.99 5.76 2.47 2.10 0.00 0.00 0.00 21.93 12.09 20.80 16.50 9.85 8.49 2.13 2.20 0.00 0.00 20 ER2b ExonRegion 0 2.30 2.79 9.84 1.48 0.62 1.92 2.42 5.22 8.71 7.57 0.67 5.07 0.57 50.97 41.45 34.45 33.28 7.15 4.42 6.63 2.97 3.08 1.72 21 E2a_E3a KnownJunction 0 6.67 0.00 15.02 2.06 0.00 4.83 1.81 4.81 5.21 8.89 0.00 12.60 0.00 96.36 43.02 44.52 31.60 20.06 9.60 5.88 8.83 7.84 8.11 22 ER3a ExonRegion 0 2.92 1.92 10.17 3.73 0.61 2.63 2.92 4.92 6.92 7.96 0.00 8.05 1.28 71.14 41.77 34.94 29.58 11.47 5.71 9.61 3.80 2.75 4.99 23 E3_Da NovelBoundary 0 0.00 0.00 4.49 3.53 0.00 0.00 2.12 0.00 1.10 7.79 0.00 5.40 0.00 14.07 4.45 7.69 24.12 17.29 4.33 0.00 0.00 3.12 0.00 24 E3a_E4a KnownJunction 0 6.08 8.62 11.50 6.76 3.99 2.38 4.15 8.30 12.21 8.81 0.00 19.36 0.00 87.29 40.42 80.24 41.80 2.11 4.24 11.31 5.68 0.00 8.62 25 ER4a ExonRegion 0 6.88 5.82 25.42 10.92 4.43 8.27 6.55 14.19 9.23 16.46 1.15 11.40 4.62 145.80 72.16 81.72 63.67 28.49 3.85 19.10 11.45 5.64 5.77 26 E4_Da NovelBoundary 0 3.48 0.00 16.68 2.06 4.24 0.00 2.03 11.91 4.69 10.93 0.00 6.30 0.00 36.32 36.34 37.08 7.67 25.74 8.38 5.37 5.99 0.00 0.00 27 E4a_E5a KnownJunction 0 10.67 6.45 23.42 8.52 0.00 14.82 1.99 15.53 5.87 14.94 2.42 5.40 6.82 170.41 98.40 93.74 64.42 16.13 0.00 12.53 2.41 14.21 7.17 28 I4 Intron 0 7.78 3.27 17.20 7.00 3.07 2.94 2.43 7.10 3.81 9.03 0.00 8.89 4.82 30.31 22.54 32.09 12.89 10.13 3.66 3.91 2.03 1.44 6.75 29 I4_AR1 ActiveIntronRegion 0 8.54 1.78 20.57 8.52 2.88 2.95 2.48 7.74 4.42 10.39 0.00 7.24 5.12 31.48 21.39 36.37 14.49 11.56 4.06 4.59 2.28 1.78 7.00 30 I4_SR1 SilentIntronRegion 0 5.25 9.06 5.19 1.54 3.96 3.03 2.36 5.00 1.66 4.21 0.00 15.53 3.87 27.15 27.88 17.25 7.39 5.14 2.29 1.53 1.15 0.18 6.06 31 E5_Aa NovelBoundary 0 6.00 6.51 18.33 17.41 3.82 0.00 3.93 5.87 4.63 6.90 0.00 7.65 0.00 31.02 35.60 39.56 26.37 13.93 0.00 6.46 5.62 0.00 0.00 32 ER5a ExonRegion 0 13.25 9.37 54.17 22.99 8.06 11.28 10.68 31.64 24.69 35.85 4.42 34.72 9.10 207.77 134.64 147.55 89.13 50.95 16.97 27.87 7.05 9.62 7.57 33 E5_Da KnownBoundary 0 45.93 3.35 51.74 27.67 8.57 31.74 14.40 48.96 25.81 47.52 10.16 17.71 6.66 200.66 106.81 126.98 88.08 42.74 25.04 28.19 11.18 10.23 15.19 34 E5a_E6a KnownJunction 0 0.00 10.06 3.31 0.00 0.00 0.00 0.00 2.18 0.00 4.35 0.00 0.00 0.00 9.42 13.35 8.12 11.78 3.65 0.00 3.20 0.00 0.00 0.00 35 E5a_E7a KnownJunction 0 0.00 0.00 5.50 0.00 0.00 0.00 0.00 4.11 6.19 1.02 0.00 7.50 0.00 2.47 0.00 11.62 8.51 2.57 0.00 0.00 0.00 0.00 0.00 36 ER5b ExonRegion 0 11.40 4.61 29.31 15.83 4.97 13.10 14.63 26.48 14.77 30.67 2.73 26.75 12.69 172.76 105.19 94.04 64.28 32.64 14.99 13.39 6.98 7.43 5.61 37 E5_Db NovelBoundary 0 3.19 5.59 19.48 17.28 0.00 5.56 6.18 21.15 12.82 22.91 0.00 6.90 12.66 61.39 73.18 43.49 25.99 20.40 9.60 21.35 11.92 2.51 0.00 38 E5b_E6a KnownJunction 0 7.48 5.92 17.86 13.02 3.74 0.00 4.15 6.57 9.92 18.08 2.68 16.81 5.84 105.25 82.70 68.96 37.68 11.61 0.00 3.26 0.00 13.10 3.76 39 I5 Intron 0 5.14 4.12 17.00 4.11 5.42 4.45 2.14 15.64 4.47 13.84 1.56 8.97 0.00 42.96 33.16 60.15 20.04 23.43 6.45 3.44 2.68 5.90 3.57 40 I5_SR1 SilentIntronRegion 0 5.22 4.18 17.27 4.18 5.50 4.53 2.18 15.89 4.54 14.06 1.59 9.11 0.00 43.62 33.67 61.12 20.34 23.81 6.55 3.50 2.72 6.00 3.62 41 E6_Aa NovelBoundary 0 10.15 9.93 28.09 22.08 7.64 4.54 7.60 11.34 15.05 7.98 0.00 18.91 6.82 50.56 29.67 40.33 9.54 25.16 13.93 13.81 0.00 3.06 8.71 42 ER6a ExonRegion 0 5.71 6.95 48.13 17.35 3.67 7.36 11.69 16.95 14.25 29.85 0.89 18.87 5.40 146.96 116.16 112.66 59.40 21.59 8.48 14.83 5.06 7.20 7.69 43 E6_Da NovelBoundary 0 0.00 0.00 13.04 5.39 3.74 2.21 4.02 4.81 3.30 7.82 0.00 12.60 12.99 4.41 4.45 51.87 16.83 7.34 0.00 0.00 0.00 0.00 4.10 44 E6a_E7a KnownJunction 0 13.19 5.99 34.06 24.47 4.33 5.74 8.39 11.38 17.88 22.75 0.00 18.01 0.00 107.36 61.07 85.96 55.73 22.18 8.66 18.22 0.00 3.00 0.00 45 I6 Intron 0 1.24 0.79 1.78 0.40 1.04 4.28 1.80 3.51 5.02 3.99 0.38 4.07 0.75 15.55 15.98 23.72 5.78 6.08 3.10 3.73 1.72 1.62 1.14 46 I6_SR1 SilentIntronRegion 0 1.25 0.80 1.79 0.40 1.05 4.32 1.82 3.54 5.05 4.02 0.38 4.10 0.76 15.66 16.10 23.90 5.83 6.12 3.12 3.76 1.73 1.63 1.15 47 E7_Aa NovelBoundary 0 10.08 6.51 12.95 3.30 0.00 5.17 10.33 14.17 12.21 7.58 2.16 32.56 0.00 21.43 22.25 20.76 13.46 15.84 8.85 6.52 0.00 0.00 8.02 48 ER7a ExonRegion 0 11.06 11.58 32.92 11.35 12.38 7.36 8.46 21.66 23.75 29.42 0.62 29.22 9.61 171.52 123.39 103.84 59.66 29.84 11.63 27.11 8.22 7.60 3.74 49 E7a_E8a KnownJunction 1 0.00 13.02 25.31 15.58 10.87 7.15 3.62 24.69 15.89 21.62 0.00 19.81 0.00 121.31 110.88 134.84 34.41 25.41 0.00 37.01 6.18 5.69 0.00 50 E7a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 4.36 4.11 1.70 0.00 0.00 0.00 0.00 0.00 51 E8_Aa NovelBoundary 0 3.48 16.18 9.31 3.66 3.90 6.47 2.25 4.97 3.59 2.93 0.00 0.00 0.00 12.54 4.45 8.03 3.93 9.04 0.00 2.43 0.00 0.00 0.00 52 ER8a ExonRegion 0 8.76 13.40 28.69 14.82 9.22 9.37 9.58 21.75 17.02 22.05 1.42 20.25 2.33 148.44 117.28 99.38 65.07 28.57 11.60 27.84 4.93 7.02 5.92 53 E8a_E9a KnownJunction 0 13.85 5.33 31.73 1.47 8.66 5.00 1.81 16.18 11.46 28.12 0.00 19.51 8.28 164.52 109.28 94.85 71.34 30.59 4.24 16.04 5.37 5.39 7.34 54 ER9a ExonRegion 0 8.07 2.66 32.96 14.98 2.55 7.79 6.89 17.31 18.73 18.32 0.94 15.84 7.78 150.00 131.13 97.22 64.74 22.90 12.50 21.19 3.49 5.01 5.82 55 E9_Da KnownBoundary 0 17.71 0.00 43.35 19.81 28.10 17.55 14.22 30.27 15.28 33.68 4.79 19.96 0.00 193.95 120.53 108.86 72.28 35.69 12.99 25.63 5.75 3.12 8.71 56 ER9b ExonRegion 0 33.95 15.47 39.88 21.41 18.03 12.61 15.27 23.07 22.07 21.02 3.91 47.62 26.18 125.75 127.52 112.75 65.11 23.10 10.21 29.14 5.12 8.03 13.54 57 ER9c ExonRegion 0 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00