Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CALR3 Gene 0 0.10 0.13 0.20 0.29 0.09 0.06 0.19 0.00 0.12 0.33 0.37 0.59 0.33 0.41 0.33 0.47 0.47 0.00 0.05 0.14 0.11 0.00 0.28 2 409035 Transcript 0 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.08 0.18 0.15 0.00 0.23 0.07 0.00 0.00 0.33 0.00 0.00 0.18 0.23 0.00 0.16 3 269881 Transcript 0 0.14 0.00 0.06 0.48 0.09 0.06 0.21 0.00 0.18 0.29 0.28 0.38 0.25 0.66 1.10 0.62 0.00 0.00 0.11 0.14 0.00 0.00 0.17 4 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 Ix_AR9 ActiveIntronRegion 0 1.61 1.81 2.44 0.84 0.34 0.00 2.36 3.50 4.56 3.03 1.03 5.48 8.59 1.94 3.62 6.86 17.12 1.75 7.53 4.15 1.28 0.37 7.02 6 Ix_AR7 ActiveIntronRegion 0 9.23 3.19 6.32 3.41 6.27 2.88 4.66 6.68 6.31 5.43 1.85 5.59 8.59 0.69 14.36 9.89 14.28 4.73 11.86 5.59 1.53 0.36 13.42 7 Ix_AR5 ActiveIntronRegion 0 3.58 0.00 3.77 2.67 3.29 0.49 3.87 9.31 3.09 6.26 1.86 0.83 2.16 1.37 9.82 15.78 17.14 0.00 3.19 5.48 0.00 0.00 0.00 8 Ix_AR4 ActiveIntronRegion 0 5.23 4.16 8.52 2.39 5.15 1.22 9.74 7.14 6.41 4.84 0.56 16.04 13.55 1.96 12.57 6.11 14.96 2.32 6.80 4.64 4.10 0.35 4.89 9 Ix_AR3 ActiveIntronRegion 0 7.80 3.22 6.44 2.21 4.50 2.29 4.01 12.94 8.91 4.51 2.34 5.32 16.92 1.95 14.13 9.47 15.96 7.04 5.30 7.57 3.37 0.63 7.04 10 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.08 0.00 0.78 0.00 0.00 0.00 0.28 0.00 0.00 0.35 0.00 0.00 0.00 12 Ix_AR5 ActiveIntronRegion 0 3.73 2.01 3.89 3.54 4.83 2.60 3.10 7.43 4.71 18.75 18.21 6.53 5.70 12.47 13.97 14.26 22.30 9.49 7.13 7.51 4.22 1.66 3.54 13 Ix_SR3 SilentIntronRegion 0 2.88 2.28 2.33 3.66 4.47 1.49 2.44 5.37 4.20 15.72 6.32 9.92 1.97 5.41 8.16 9.07 11.59 10.62 9.17 6.17 3.63 1.83 6.19 14 Ix_AR4 ActiveIntronRegion 0 7.90 4.62 8.21 5.73 7.75 3.24 5.18 8.60 5.23 18.81 8.89 6.90 3.69 6.40 11.12 12.42 10.54 12.85 11.52 11.28 5.86 1.99 6.76 15 Ix_SR2 SilentIntronRegion 0 6.71 3.10 4.27 5.13 5.19 3.34 3.65 10.33 5.32 17.22 9.24 4.52 3.89 3.79 6.95 6.56 8.77 11.06 6.55 10.10 3.31 0.75 7.26 16 Ix_AR2 ActiveIntronRegion 0 4.43 5.11 6.51 5.20 4.93 2.67 4.24 8.61 7.75 19.37 2.91 1.80 1.95 3.64 7.65 7.69 9.13 14.41 6.75 7.43 5.93 2.33 2.48 17 Ix_SR1 SilentIntronRegion 0 7.34 3.12 5.56 4.90 5.28 2.90 4.40 7.73 7.06 21.04 5.48 4.38 3.54 4.04 7.37 7.92 11.32 11.68 9.27 9.09 4.14 2.18 4.98 18 Ix_AR1 ActiveIntronRegion 0 11.79 3.11 10.97 6.30 9.38 4.78 5.06 8.21 9.66 22.27 13.30 8.91 3.65 11.04 13.98 14.87 15.87 17.47 10.01 10.30 5.27 3.44 6.55 19 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 1.29 0.00 2.38 0.00 0.00 0.00 4.40 0.00 0.00 1.33 1.50 0.00 0.00 20 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 Ix Intron 0 4.64 1.43 8.43 7.31 5.86 3.44 3.00 10.07 7.63 18.59 12.10 8.90 6.15 7.59 10.03 11.86 17.82 14.79 7.47 7.99 5.34 2.28 5.97 22 Ix_AR1 ActiveIntronRegion 0 4.65 1.44 8.45 7.33 5.88 3.45 3.01 10.10 7.65 18.64 12.13 8.93 6.17 7.62 10.06 11.89 17.87 14.84 7.50 8.01 5.36 2.29 5.99 23 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E4_Da NovelBoundary 0 10.08 9.34 38.70 22.51 19.27 28.39 18.28 17.29 22.83 37.93 152.72 12.45 34.58 89.65 110.14 120.65 126.98 47.30 35.39 37.78 16.56 17.15 30.39 25 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 Ix Intron 0 19.27 12.41 8.36 19.48 11.37 6.60 10.03 8.77 7.17 13.50 5.00 3.93 3.32 13.55 15.14 10.45 9.44 11.92 9.55 12.87 3.90 2.10 5.28 27 Ix_AR1 ActiveIntronRegion 0 19.96 12.86 8.66 20.18 11.78 6.83 10.39 9.09 7.43 13.99 5.18 4.07 3.44 14.00 15.68 10.82 9.78 12.34 9.84 13.33 4.04 2.12 5.47 28 ER5a ExonRegion 0 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.06 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.29 1.31 0.00 0.86 29 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 Ix Intron 0 18.73 11.13 10.74 12.97 11.11 3.76 11.30 9.16 8.48 8.42 9.35 12.88 11.76 6.20 17.54 17.08 15.96 16.35 16.13 13.20 6.74 4.66 8.71 31 Ix_SR1 SilentIntronRegion 0 19.16 11.68 11.46 13.84 11.72 4.02 11.80 9.78 9.05 8.98 9.50 13.22 11.98 6.61 17.81 17.79 16.55 17.44 17.05 13.67 6.97 4.77 8.57 32 ER6a ExonRegion 0 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.68 0.85 0.65 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.52 0.42 0.00 1.36 33 E6_Da NovelBoundary 0 70.68 77.22 109.49 111.27 34.30 135.09 78.87 82.35 129.19 238.16 197.05 148.10 349.49 216.32 234.87 187.98 197.94 180.90 106.54 228.57 231.11 168.51 173.54 34 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 Ix_SR5 SilentIntronRegion 0 6.42 15.59 10.74 18.47 14.24 10.05 18.89 11.89 4.91 17.37 2.41 12.16 12.00 5.78 10.32 7.42 9.86 15.20 9.09 5.31 2.75 4.46 5.76 36 Ix_SR4 SilentIntronRegion 0 8.33 29.48 9.15 8.00 11.01 5.58 6.40 9.22 4.28 11.32 1.38 2.69 4.15 6.53 5.31 3.19 1.77 5.26 6.84 6.09 5.52 4.47 7.88 37 Ix_AR4 ActiveIntronRegion 0 6.52 11.91 19.41 13.14 7.01 10.45 6.73 11.51 5.96 21.86 2.68 4.39 0.60 3.68 16.15 10.99 4.07 17.56 6.87 6.88 3.06 2.89 8.60 38 Ix_AR2 ActiveIntronRegion 0 13.12 7.31 9.00 14.61 6.56 3.00 6.42 8.55 7.08 12.32 8.74 2.91 1.56 19.61 19.97 10.20 3.49 10.00 3.91 6.21 1.44 1.89 1.44 39 Ix_SR2 SilentIntronRegion 0 9.20 3.24 8.72 6.63 3.07 1.72 5.59 8.08 6.81 19.33 8.12 9.08 12.92 15.23 21.86 16.34 12.39 30.26 14.26 13.39 14.01 6.05 19.92 40 Ix Intron 0 33.41 27.71 42.62 53.43 21.66 31.92 18.04 29.54 22.10 48.89 38.08 7.63 15.19 34.73 37.35 42.91 24.94 47.34 42.99 21.53 18.73 18.55 21.40 41 Ix_AR1 ActiveIntronRegion 0 33.58 27.86 42.84 53.71 21.78 32.09 18.14 29.69 22.22 49.14 38.28 7.67 15.27 34.89 37.55 43.14 25.07 47.59 43.21 21.64 18.83 18.65 21.49 42 Ix Intron 0 30.71 14.31 27.70 22.32 16.48 26.61 12.81 17.55 19.42 22.17 17.85 5.65 4.25 17.03 20.86 15.03 10.88 22.41 23.81 11.23 11.63 10.08 12.27 43 Ix_AR1 ActiveIntronRegion 0 30.84 14.37 27.82 22.41 16.55 26.72 12.85 17.63 19.51 22.26 17.90 5.68 4.26 17.09 20.95 15.09 10.93 22.51 23.91 11.26 11.68 10.11 12.32 44 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 E7_Da NovelBoundary 0 140.25 125.96 146.15 149.93 59.59 150.65 102.50 107.20 107.23 277.03 280.02 17.26 41.88 302.08 246.62 191.49 249.93 197.32 138.07 153.21 158.34 84.75 83.49 46 E7a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 Ix_AR1 ActiveIntronRegion 0 2.60 21.02 6.59 6.86 5.99 7.03 1.37 1.30 3.61 9.34 4.15 0.96 1.61 6.70 6.18 9.21 4.36 5.16 6.68 5.39 6.30 4.15 12.08 48 Ix Intron 0 4.28 4.91 5.12 6.96 2.50 5.28 4.43 4.41 6.45 5.59 3.61 6.01 6.68 7.57 11.81 14.81 5.14 8.65 7.94 4.47 4.63 4.06 6.17 49 Ix_SR1 SilentIntronRegion 0 4.30 4.92 5.13 6.98 2.51 5.30 4.45 4.43 6.47 5.61 3.62 6.03 6.70 7.60 11.85 14.85 5.16 8.68 7.96 4.49 4.64 4.07 6.19 50 Ix_SR3 SilentIntronRegion 0 5.05 4.90 5.83 2.44 1.07 2.95 3.72 4.04 2.96 4.12 7.00 1.43 4.99 2.72 9.05 13.11 7.95 2.14 10.23 5.98 0.88 1.67 7.08 51 Ix_AR3 ActiveIntronRegion 0 7.92 5.71 5.64 5.32 5.77 4.80 8.92 3.86 4.13 5.60 3.80 4.00 5.44 6.45 12.27 10.85 7.43 8.09 8.05 4.58 3.92 3.90 4.12 52 ER8a ExonRegion 0 1.40 0.00 0.63 0.00 0.89 0.61 1.75 0.00 0.00 0.35 1.28 0.00 0.00 0.44 0.68 2.95 0.00 0.00 1.05 1.41 0.00 0.00 0.97 53 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 ER9a ExonRegion 0 0.00 2.03 2.70 2.03 1.34 0.92 1.99 0.00 0.76 2.89 1.91 1.78 0.00 1.26 0.14 1.31 0.00 0.00 0.00 0.00 0.00 0.00 1.47 55 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 3.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 E9a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 ER10a ExonRegion 0 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.54 0.00 0.48 0.00 1.10 0.58 0.44 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.73 58 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 ER11a ExonRegion 0 0.00 0.00 0.00 1.46 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.15 1.91 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60 E11a_E12a KnownJunction 0 0.00 0.00 0.00 1.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 ER12a ExonRegion 0 0.00 0.00 0.00 0.92 0.00 0.00 0.36 0.00 0.00 0.00 1.06 3.84 1.29 0.68 1.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 ER13a ExonRegion 0 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 5.53 0.00 0.63 0.97 1.40 0.70 0.00 0.00 0.00 0.00 0.00 0.00 64 E13a_E14a KnownJunction 0 0.00 2.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 65 ER14a ExonRegion 0 0.00 0.62 0.16 0.78 0.00 0.00 0.51 0.00 0.00 0.72 0.95 1.28 1.49 0.60 0.48 3.04 4.38 0.00 0.00 0.00 0.00 0.00 0.00 66 E14a_E15a KnownJunction 0 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 1.02 2.11 6.45 0.00 2.24 0.00 4.19 3.46 0.00 0.00 0.00 0.00 0.00 0.00 67 ER15a ExonRegion 0 0.61 0.00 0.78 0.37 0.00 0.00 0.00 0.00 0.00 1.26 0.19 0.56 0.00 1.20 0.44 1.47 3.12 0.00 0.00 0.00 0.00 0.00 0.00 68 E15a_E16a KnownJunction 0 3.78 0.00 0.00 1.86 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 4.83 0.00 8.20 4.30 0.00 0.00 0.00 0.00 0.00 0.00 69 ER16a ExonRegion 0 0.24 0.50 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.87 0.95 1.51 0.50 1.06 1.13 0.00 0.00 0.00 0.00 0.00 0.72 70 ER16b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00