Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZSWIM4 Gene 0 23.45 63.22 81.18 52.47 31.42 29.87 23.45 71.79 47.23 68.88 28.35 11.68 19.99 27.07 26.22 18.75 48.71 100.80 71.25 54.12 32.13 44.50 58.38 2 440752 Transcript 0 6.00 40.30 67.51 35.67 24.52 18.81 15.58 51.47 36.03 66.05 15.42 10.09 20.27 21.22 20.16 32.69 41.05 116.80 53.59 50.55 24.51 31.58 34.22 3 254323 Transcript 0 0.00 3.22 7.18 1.86 3.90 5.79 2.25 3.16 0.00 2.47 2.11 0.00 0.00 4.71 0.00 0.00 3.83 8.58 0.00 0.00 11.92 2.27 0.00 4 ER1a ExonRegion 0 1.26 1.95 4.26 0.49 1.48 3.13 1.46 4.43 4.98 5.75 6.78 0.53 2.22 6.95 5.57 3.55 12.76 17.27 23.44 9.93 7.68 3.81 13.90 5 E1a_E2a KnownJunction 0 0.00 3.35 24.04 2.06 12.39 14.25 4.28 35.16 15.86 11.87 4.90 0.00 0.00 7.24 6.30 0.00 16.64 31.55 61.74 24.22 8.96 17.64 25.44 6 I1 Intron 0 7.56 20.27 18.32 11.05 8.46 3.62 8.87 19.45 10.71 13.32 1.78 3.35 3.18 0.95 4.39 5.16 7.41 35.37 18.86 22.80 13.94 7.73 26.67 7 I1_SR1 SilentIntronRegion 0 8.96 18.44 14.26 6.90 7.01 2.49 6.23 18.34 10.00 11.76 1.69 4.39 4.07 0.95 3.90 3.57 7.63 31.32 20.45 20.17 9.61 6.15 19.32 8 I1_AR1 ActiveIntronRegion 0 4.26 26.52 21.84 14.66 10.08 4.76 11.80 19.94 13.94 15.27 1.63 1.95 2.21 0.91 4.84 8.01 6.62 46.18 15.44 26.13 17.03 7.89 30.40 9 I1_SR2 SilentIntronRegion 0 8.32 18.83 21.65 14.21 9.47 4.38 10.49 21.14 9.66 14.35 2.03 3.10 2.82 1.00 4.84 5.35 7.92 34.02 19.78 24.55 17.78 9.89 34.37 10 ER2a ExonRegion 0 1.62 16.21 42.92 17.14 7.11 10.80 7.58 45.02 28.30 43.47 17.28 4.22 5.73 18.63 19.68 13.08 40.05 76.34 55.44 45.41 22.70 22.35 35.59 11 E2_Da NovelBoundary 0 3.63 39.53 10.53 4.99 12.31 7.84 3.93 12.98 10.73 3.98 0.00 0.00 0.00 0.00 5.19 3.67 4.21 27.19 0.00 12.27 5.68 3.12 20.74 12 E2a_E3a KnownJunction 0 0.00 0.00 48.64 8.89 3.65 10.28 19.17 47.32 24.83 49.32 14.79 13.35 13.64 11.77 20.15 7.95 50.58 43.73 29.84 62.06 29.04 20.51 24.24 13 I2 Intron 0 7.60 19.91 20.65 25.36 16.15 6.12 10.13 21.03 13.74 12.82 0.68 1.38 1.50 2.53 4.68 5.10 8.28 31.18 20.94 16.03 9.66 11.05 29.10 14 I2_AR1 ActiveIntronRegion 0 2.62 13.60 5.32 4.47 3.29 0.00 1.60 5.55 6.12 3.79 0.00 0.00 0.00 1.32 2.36 6.87 1.75 12.43 8.23 6.38 3.21 4.28 22.70 15 I2_SR1 SilentIntronRegion 0 7.93 20.34 21.65 26.73 16.99 6.51 10.69 22.05 14.24 13.41 0.72 1.47 1.60 2.61 4.83 4.99 8.71 32.42 21.78 16.66 10.08 11.50 29.54 16 E3_Aa NovelBoundary 0 6.59 28.88 25.13 46.21 15.70 7.84 20.49 54.38 14.50 26.06 7.00 6.30 5.84 0.00 4.45 13.07 12.72 53.77 18.45 39.95 14.70 11.08 40.04 17 ER3a ExonRegion 0 11.53 33.53 91.48 49.67 13.15 23.20 23.16 76.98 60.45 86.91 34.19 18.18 27.97 26.15 22.03 22.05 62.13 134.63 73.89 74.99 40.13 51.38 61.26 18 E3a_E4a KnownJunction 0 75.05 43.54 100.14 64.03 22.50 60.82 38.20 81.74 64.81 107.93 83.13 39.16 47.56 36.55 37.09 47.17 68.91 216.93 134.97 106.04 42.19 83.09 108.50 19 ER4a ExonRegion 0 9.74 26.01 73.91 41.01 16.90 23.21 20.02 47.91 32.93 58.98 33.42 7.24 18.70 24.25 22.98 16.46 36.91 86.04 54.45 60.99 24.64 26.53 34.20 20 E4a_E5a KnownJunction 0 14.22 51.50 67.56 40.55 51.87 22.88 27.87 47.81 33.59 56.71 32.32 12.15 19.64 19.66 4.45 20.08 36.93 106.12 56.28 54.46 25.14 20.51 31.84 21 ER5a ExonRegion 0 12.74 35.07 66.18 40.61 26.47 21.69 18.02 53.03 47.61 62.71 25.26 8.23 22.55 28.59 26.50 22.08 44.18 123.30 68.85 55.83 37.93 29.07 44.87 22 E5_Da NovelBoundary 0 0.00 2.43 4.05 4.63 7.64 0.00 2.16 17.79 13.51 17.78 0.00 0.00 0.00 0.00 5.81 0.00 0.00 26.61 4.42 15.53 6.05 7.41 27.15 23 E5a_E6a KnownJunction 0 3.63 27.50 62.39 37.66 11.29 17.21 14.57 45.63 48.64 65.76 37.59 5.70 20.13 37.14 23.49 10.00 57.41 96.42 57.32 39.18 43.37 16.47 27.83 24 E6_Aa NovelBoundary 0 7.56 6.71 6.21 5.19 7.22 11.30 8.70 22.22 17.51 17.41 1.95 0.00 0.00 2.47 0.00 3.59 4.02 8.00 18.82 11.25 17.85 6.25 3.59 25 ER6a ExonRegion 0 14.49 34.35 66.39 42.63 23.35 32.00 19.62 61.23 45.85 63.46 24.48 7.65 15.08 27.73 23.24 17.83 50.22 115.80 67.31 57.80 34.91 32.37 46.95 26 E6_Da NovelBoundary 0 17.04 9.08 9.85 3.36 11.46 0.00 10.47 16.92 13.60 15.88 0.00 0.00 0.00 2.47 14.22 0.00 13.93 16.08 8.38 0.00 8.77 3.12 32.27 27 E6a_E7a KnownJunction 0 0.00 24.21 40.21 27.64 36.08 17.55 16.61 43.42 30.99 51.15 9.21 11.70 25.32 11.77 33.87 20.34 8.70 122.37 38.97 53.18 16.31 16.90 19.63 28 E6a_E8a KnownJunction 0 0.00 3.22 7.18 1.86 3.90 5.79 2.25 3.16 0.00 2.47 2.11 0.00 0.00 4.71 0.00 0.00 3.83 8.58 0.00 0.00 11.92 2.27 0.00 29 ER7a ExonRegion 0 7.19 39.79 73.73 43.49 18.04 21.33 14.00 46.78 39.82 56.88 19.47 11.52 15.85 23.21 20.32 21.92 44.89 98.58 64.50 50.71 29.29 34.32 41.36 30 E7a_E8a KnownJunction 0 10.82 56.90 88.58 35.89 19.44 17.55 16.12 64.20 37.27 90.12 17.58 7.05 19.64 28.67 6.30 55.80 69.57 129.46 57.32 47.75 27.92 43.54 41.66 31 I7 Intron 0 1.46 2.56 4.19 3.72 3.68 1.47 4.40 3.25 2.95 3.72 0.22 0.00 0.44 0.92 1.58 1.02 4.54 4.11 3.29 5.12 2.78 6.69 12.12 32 I7_SR1 SilentIntronRegion 0 1.46 2.58 4.20 3.74 3.69 1.48 4.42 3.26 2.97 3.74 0.22 0.00 0.44 0.92 1.59 1.03 4.56 4.13 3.30 5.14 2.79 6.72 12.17 33 E8_Aa NovelBoundary 0 3.11 0.00 17.12 17.68 4.33 4.83 0.00 9.69 3.59 9.19 0.00 0.00 0.00 0.00 4.70 0.00 4.39 12.64 0.00 7.93 2.72 6.25 20.40 34 ER8a ExonRegion 0 4.52 43.25 84.08 40.28 26.33 24.04 21.24 60.96 38.47 71.63 22.98 6.12 14.48 25.66 23.69 17.40 47.91 101.72 47.94 52.93 35.98 34.71 34.77 35 E8a_E9a KnownJunction 0 10.15 33.88 66.62 51.21 31.15 11.24 16.16 59.31 48.41 65.49 23.11 6.30 13.64 26.02 24.11 11.54 56.47 91.20 30.78 48.64 31.88 35.45 39.78 36 I8 Intron 0 0.88 0.85 9.36 1.13 1.85 0.25 1.29 4.64 3.57 3.79 0.27 0.00 0.00 1.01 0.85 2.88 2.74 10.19 5.30 2.65 2.75 2.02 12.21 37 I8_SR1 SilentIntronRegion 0 0.94 0.82 9.74 1.20 1.98 0.24 1.34 4.96 3.72 3.95 0.29 0.00 0.00 1.08 0.91 3.08 2.94 10.64 5.67 2.84 2.94 2.07 12.86 38 ER9a ExonRegion 0 8.47 37.69 76.05 41.44 24.88 22.62 14.83 55.72 41.12 69.00 26.14 5.99 8.13 22.82 20.01 14.34 41.76 93.28 58.30 50.26 28.98 34.96 40.12 39 E9a_E10a KnownJunction 0 0.00 45.78 86.40 51.84 16.04 8.23 19.92 68.51 49.45 83.62 33.48 0.00 13.31 18.78 43.02 34.26 38.80 116.57 57.79 44.81 12.17 50.82 47.12 40 ER10a ExonRegion 0 7.36 32.30 85.76 58.15 20.66 29.19 23.41 93.44 55.76 89.89 38.74 5.63 16.69 31.20 28.37 18.05 66.16 148.78 79.68 62.72 38.19 55.00 54.69 41 E10a_E11a KnownJunction 0 9.93 34.40 100.00 87.10 21.99 35.83 30.78 119.44 46.30 82.39 43.43 5.55 28.57 31.14 25.71 10.42 65.26 193.05 87.34 92.94 37.31 58.78 40.29 42 I10 Intron 0 2.67 3.31 6.33 4.05 6.04 1.54 2.64 3.38 2.22 1.26 0.61 0.56 1.42 0.26 1.19 0.94 2.95 3.33 4.52 1.45 1.39 5.36 13.73 43 I10_AR1 ActiveIntronRegion 0 3.18 4.71 10.18 8.29 11.28 2.49 3.78 4.90 3.50 0.93 1.58 1.00 3.15 0.00 1.58 2.02 5.84 4.00 7.36 1.74 0.60 7.66 14.79 44 I10_SR2 SilentIntronRegion 0 2.85 2.97 5.14 1.83 3.61 1.24 2.53 3.19 1.86 1.73 0.00 0.37 0.43 0.56 1.25 0.33 1.49 3.52 3.23 1.68 2.48 4.68 16.53 45 ER11a ExonRegion 0 12.71 41.66 101.21 60.33 20.89 40.73 25.20 93.37 46.21 90.18 45.01 16.28 19.46 31.56 27.57 22.43 63.02 121.57 73.65 65.44 28.05 56.32 55.89 46 E11a_E12a KnownJunction 0 7.26 32.36 100.94 66.33 19.02 10.33 13.47 95.37 50.78 78.87 44.17 6.30 27.92 37.38 15.08 16.15 58.34 102.39 57.04 66.03 20.76 51.99 16.30 47 E12_Aa NovelBoundary 0 0.00 0.00 11.86 1.60 3.14 0.00 2.25 1.60 6.42 5.16 2.68 0.00 0.00 0.00 5.93 4.36 0.00 4.06 4.80 2.43 3.15 8.45 29.62 48 ER12a ExonRegion 0 8.66 54.39 97.24 56.98 21.90 29.62 18.87 91.84 54.34 80.54 37.69 9.16 31.74 32.29 23.12 15.62 51.30 126.76 70.31 57.63 31.27 44.67 48.60 49 E12a_E13a KnownJunction 0 13.85 53.54 130.16 63.93 31.07 22.88 29.59 103.14 65.19 76.80 32.96 5.40 26.46 36.67 25.96 20.25 48.15 184.05 85.74 92.42 19.34 30.62 29.36 50 I12 Intron 0 5.18 8.52 11.39 8.99 6.55 2.95 3.77 8.90 8.70 7.62 1.04 1.37 2.08 1.23 2.10 1.99 2.55 9.92 5.55 6.56 6.43 13.20 35.15 51 I12_SR1 SilentIntronRegion 0 5.19 8.53 11.40 9.00 6.56 2.96 3.78 8.91 8.71 7.63 1.04 1.37 2.08 1.23 2.10 2.00 2.55 9.93 5.56 6.57 6.44 13.22 35.20 52 ER13a ExonRegion 0 18.87 50.59 110.39 63.09 22.16 34.71 23.72 106.24 69.90 90.52 39.41 9.19 14.24 36.52 28.48 16.78 40.70 186.69 89.73 70.52 28.94 43.86 74.06 53 E13_Da NovelBoundary 0 19.71 17.83 4.23 5.06 4.16 0.00 5.17 15.24 10.27 9.70 2.26 0.00 0.00 2.47 0.00 4.19 0.00 9.49 0.00 2.43 0.00 16.90 21.94 54 E13a_E14a KnownJunction 0 32.97 44.86 114.04 75.61 19.44 39.24 46.99 146.47 73.15 116.82 56.38 5.25 13.64 50.03 19.53 18.20 73.31 221.98 100.43 90.31 34.35 51.86 82.97 55 I13 Intron 0 4.40 4.93 8.22 5.86 5.25 1.27 3.97 7.13 8.49 6.11 1.34 0.00 1.43 0.90 1.83 1.03 3.05 15.15 8.45 4.17 7.37 11.30 29.82 56 I13_SR1 SilentIntronRegion 0 4.42 4.95 8.25 5.88 5.27 1.28 3.99 7.17 8.53 6.14 1.34 0.00 1.44 0.91 1.84 1.03 3.06 15.22 8.48 4.19 7.40 11.35 29.95 57 E14_Aa NovelBoundary 1 13.48 6.71 19.16 12.69 8.66 0.00 8.61 19.72 7.41 22.83 7.16 6.30 0.00 0.00 19.28 0.00 3.74 25.29 16.19 22.75 0.00 14.02 66.24 58 ER14a ExonRegion 0 43.17 104.02 96.35 69.69 50.27 40.14 32.81 89.79 55.67 77.48 31.24 15.53 25.41 31.35 33.40 21.46 53.76 100.42 85.04 56.57 36.38 57.78 78.69 59 IG22 Intergenic 0 8.59 0.62 21.66 2.63 2.74 0.94 2.62 10.71 19.14 10.20 1.98 1.08 1.56 2.55 1.45 2.53 1.91 3.07 2.93 1.74 22.60 23.23 117.73 60 IG22_SR1 SilentIntergenicRegion 0 5.32 0.00 10.77 1.27 1.26 0.00 1.88 4.85 6.86 5.29 0.00 5.05 0.00 6.50 2.90 5.74 0.00 0.00 5.26 1.30 17.17 22.72 262.30 61 IG22_AR2 ActiveIntergenicRegion 0 3.25 0.00 10.37 0.82 3.03 0.00 0.00 3.00 4.61 3.67 0.00 0.00 0.00 2.60 0.00 2.77 0.00 0.00 7.22 0.99 0.00 11.39 68.91 62 IG22_AR3 ActiveIntergenicRegion 0 6.29 0.72 22.57 1.70 2.61 0.28 1.72 12.66 16.66 9.30 1.92 1.09 0.88 2.49 1.07 2.49 2.52 2.87 4.13 1.62 22.30 22.56 102.35 63 IG22_SR3 SilentIntergenicRegion 0 8.55 0.14 17.26 3.28 1.84 0.80 2.98 8.26 13.36 9.06 1.68 0.00 0.41 2.13 1.65 2.33 2.66 3.41 1.93 2.01 15.09 21.56 96.43 64 IG22_AR4 ActiveIntergenicRegion 0 12.89 0.88 25.60 3.98 3.72 2.16 3.99 10.82 28.88 13.44 2.67 1.11 3.50 2.34 1.78 2.30 1.08 3.86 1.39 1.92 29.51 26.43 135.05