Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ATG4D Gene 0 33.95 26.82 111.19 33.83 21.85 25.38 29.83 49.81 34.58 56.08 52.10 15.06 11.97 61.13 76.97 60.58 45.95 87.55 83.02 60.02 25.66 27.21 29.74 2 309469 Transcript 0 45.61 38.88 155.68 45.66 30.10 35.80 39.26 64.30 43.72 71.29 67.57 20.52 19.84 74.83 104.33 71.71 63.93 125.25 125.88 87.62 31.74 35.32 38.12 3 ER1a ExonRegion 0 4.79 9.09 28.93 4.62 3.90 10.62 8.93 10.87 7.37 17.73 24.52 5.58 0.83 28.15 28.66 20.31 23.70 20.63 23.28 21.72 13.05 10.09 9.59 4 E1a_E2a KnownJunction 0 23.12 39.60 135.42 14.08 8.15 15.73 19.25 47.07 35.53 60.73 52.91 36.01 12.66 66.63 76.52 23.84 54.79 100.77 59.67 37.20 25.39 27.37 32.44 5 E2_Aa NovelBoundary 0 10.45 9.93 46.39 17.21 3.14 4.94 3.80 22.80 20.86 34.73 21.06 0.00 12.17 14.24 4.45 4.36 12.06 25.08 7.44 21.48 13.16 8.14 23.05 6 ER2a ExonRegion 0 28.60 30.36 105.34 25.12 12.04 15.74 26.12 41.89 29.20 48.02 57.07 22.42 12.45 70.26 68.56 52.65 47.43 61.13 73.26 43.21 41.24 32.49 20.42 7 E2a_E3a KnownJunction 0 24.67 42.95 138.32 47.41 3.82 31.52 29.99 58.20 57.00 75.48 48.80 24.76 26.95 70.81 88.26 53.06 109.49 79.01 66.92 77.92 43.12 40.41 28.34 8 ER3a ExonRegion 0 19.96 28.22 127.47 35.54 13.78 19.57 29.10 52.56 39.12 70.29 59.78 26.15 10.92 76.29 87.05 69.35 65.71 106.54 85.71 63.94 39.15 35.05 35.02 9 E3_Da NovelBoundary 0 3.78 0.00 9.37 10.39 3.23 2.90 9.98 5.05 7.32 17.86 0.00 0.00 0.00 5.42 0.00 3.16 13.46 6.72 8.09 6.01 2.47 2.27 0.00 10 E3a_E4a KnownJunction 0 12.08 21.51 65.79 30.37 12.14 18.17 17.80 45.35 26.07 42.76 55.96 7.65 20.29 57.80 45.61 36.83 60.40 77.85 82.83 72.48 35.77 21.43 49.00 11 E3a_E5a NovelJunction 0 0.00 4.87 22.59 10.09 6.45 11.47 4.06 7.72 8.36 11.77 4.79 0.00 0.00 0.00 0.00 0.00 0.00 11.94 10.64 6.33 0.00 0.00 0.00 12 E3a_E6a NovelJunction 0 0.00 13.22 47.84 16.18 21.48 2.90 13.47 2.09 5.18 18.02 5.21 0.00 0.00 9.54 14.09 11.54 13.09 23.42 20.24 5.82 10.87 11.94 11.95 13 ER4a ExonRegion 0 27.99 17.84 74.14 22.35 14.02 17.74 25.28 33.33 21.75 41.77 39.58 11.68 12.66 58.40 60.95 48.35 41.37 77.43 53.17 50.99 18.83 16.57 31.30 14 E4_Da NovelBoundary 0 15.48 3.16 12.42 11.99 4.33 2.38 13.82 23.54 17.59 7.95 17.11 0.00 0.00 17.66 18.05 22.30 3.74 36.64 8.66 14.76 0.00 3.12 4.27 15 E4a_E5a KnownJunction 0 7.04 11.38 108.81 25.24 23.51 29.02 24.16 37.09 17.04 39.89 32.59 11.25 6.82 45.09 62.80 16.75 20.66 71.88 85.18 48.45 14.27 20.39 20.49 16 I4_AR1 ActiveIntronRegion 0 10.58 1.46 0.00 0.00 1.88 9.19 4.76 0.00 0.00 0.00 4.17 0.00 0.00 7.55 10.26 2.13 2.37 0.00 6.86 12.23 1.58 4.49 8.44 17 E5_Aa NovelBoundary 0 9.71 5.33 9.67 3.86 6.79 5.22 9.72 12.65 7.52 15.63 9.21 6.30 0.00 7.30 4.45 16.24 13.18 33.25 4.80 8.69 12.05 11.51 11.95 18 ER5a ExonRegion 0 30.51 21.87 105.95 24.55 24.91 31.29 34.46 42.89 33.99 50.68 63.43 14.05 19.77 57.42 76.64 43.07 50.48 111.32 73.70 72.47 24.85 27.79 38.99 19 E5_Da NovelBoundary 0 3.11 0.00 9.67 11.02 0.00 4.66 2.25 10.64 4.46 4.81 2.68 0.00 0.00 2.12 0.00 12.22 4.77 27.36 0.00 2.81 0.00 8.63 7.26 20 E5a_E6a KnownJunction 0 48.30 29.86 137.99 36.36 49.15 44.41 39.61 60.05 38.28 78.97 71.33 31.06 26.62 75.34 130.54 44.43 47.87 147.70 82.73 114.03 27.74 18.25 40.04 21 E6_Aa NovelBoundary 0 0.00 11.31 16.38 7.42 0.00 0.00 4.37 8.38 6.77 12.95 0.00 13.20 0.00 7.59 0.00 7.52 15.99 9.45 0.00 3.26 2.97 3.12 6.66 22 ER6a ExonRegion 0 40.26 30.22 197.13 64.65 23.73 36.03 40.18 89.68 57.18 87.19 68.09 31.99 21.02 84.73 154.83 91.50 64.33 162.56 160.65 120.92 39.55 45.49 47.39 23 E6a_E7a KnownJunction 0 41.79 36.31 232.34 67.86 37.10 68.71 73.88 109.05 63.08 88.21 87.60 43.81 13.80 120.37 156.01 88.52 94.25 167.76 259.68 151.23 62.83 48.74 45.84 24 ER7a ExonRegion 0 62.16 47.00 217.95 55.27 41.73 42.64 45.25 82.07 57.47 92.35 90.72 15.84 14.66 89.72 128.83 72.95 76.05 150.72 126.81 126.10 49.88 53.99 32.45 25 E7_Da NovelBoundary 0 90.09 8.95 26.99 15.95 18.08 17.15 8.57 16.02 20.95 13.08 12.79 25.21 0.00 13.77 38.94 27.09 4.49 26.53 32.94 17.64 11.31 15.12 56.17 26 E7a_E8a KnownJunction 0 84.16 79.00 204.93 76.05 43.63 44.69 48.58 47.65 52.20 97.59 94.29 7.20 54.22 66.69 136.35 95.10 73.02 172.86 132.80 124.77 22.80 57.87 50.28 27 E8_Aa NovelBoundary 0 38.23 2.63 13.19 6.59 12.14 13.34 11.04 7.19 2.31 2.74 17.32 0.00 0.00 2.47 19.66 16.49 8.32 17.45 12.52 8.95 5.50 2.76 8.11 28 ER8a ExonRegion 0 80.40 73.42 248.42 72.82 51.26 50.37 61.01 76.88 59.16 95.95 88.01 27.61 24.61 83.02 137.41 104.60 77.34 213.19 184.42 121.17 29.25 37.99 42.56 29 E8a_E9a KnownJunction 0 126.91 87.62 289.11 101.29 79.97 73.14 81.83 112.58 69.73 110.48 124.14 23.11 33.44 128.44 185.80 176.53 107.15 236.57 382.03 153.47 35.71 56.95 51.30 30 ER9a ExonRegion 0 86.05 51.67 214.42 60.77 53.18 54.89 56.03 94.76 67.82 100.77 116.52 26.84 26.26 103.88 156.38 108.80 80.57 167.95 180.08 102.15 33.18 41.06 44.56 31 E9a_E10a KnownJunction 0 76.75 52.23 215.78 61.50 47.03 48.04 51.14 118.91 57.15 94.29 62.65 12.15 27.11 79.70 134.00 144.06 83.22 178.66 194.64 111.73 23.60 49.97 71.28 32 ER10a ExonRegion 0 41.09 28.52 109.80 41.69 28.78 27.96 33.25 60.83 41.59 61.40 45.75 10.70 11.81 59.09 67.01 71.72 36.86 75.18 84.10 50.88 22.91 29.26 33.07