Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC010422.2 Gene 0 34.03 30.06 88.71 42.23 32.89 32.49 27.34 55.31 43.35 73.28 54.57 11.45 9.62 57.67 85.57 63.00 47.33 80.32 46.43 72.49 29.78 23.26 28.07 2 418543 Transcript 0 4.45 2.40 19.97 5.67 7.49 3.32 2.40 4.80 13.77 9.12 20.81 2.98 4.86 9.96 27.95 39.83 24.58 26.11 12.89 14.28 17.14 10.54 15.87 3 242796 Transcript 0 55.83 37.64 53.13 36.49 57.30 38.13 38.39 38.09 35.26 41.96 47.05 12.83 0.09 38.92 37.11 38.69 24.17 56.76 55.83 57.17 17.71 9.12 30.09 4 ER1a ExonRegion 0 9.65 4.06 15.45 4.58 3.81 6.79 4.53 3.19 9.77 6.31 18.13 0.00 2.20 8.48 23.23 31.30 23.31 16.86 9.61 10.10 14.63 6.06 10.65 5 E1a_E2a KnownJunction 1 0.00 0.00 13.93 4.13 0.00 0.00 0.00 4.60 10.19 7.90 38.80 0.00 0.00 0.00 21.14 27.69 29.92 13.60 12.14 12.34 29.04 8.57 19.89 6 E2_Aa NovelBoundary 0 14.74 2.96 16.94 3.50 12.65 11.58 2.12 8.95 13.80 17.14 2.68 0.00 6.82 9.83 4.45 17.17 18.98 11.94 8.47 14.45 8.96 5.51 4.35 7 ER2a ExonRegion 1 8.15 2.78 25.63 8.81 6.20 3.58 1.47 9.12 18.53 14.52 23.63 6.06 3.60 21.53 42.60 57.61 18.90 38.71 25.19 20.25 16.49 13.73 24.67 8 E2a_E3b KnownJunction 0 0.00 2.76 24.87 5.16 19.95 2.90 3.62 2.30 16.61 7.74 2.68 5.85 13.64 9.83 24.85 42.72 26.18 35.28 4.61 14.45 8.40 13.78 8.28 9 E3_Aa NovelBoundary 0 108.61 60.52 117.53 59.63 113.75 29.81 44.56 163.93 86.43 79.81 53.96 5.70 12.17 63.22 26.70 16.15 13.00 133.69 52.43 69.48 13.47 35.09 57.28 10 ER3a ExonRegion 0 55.83 37.64 53.13 36.49 57.30 38.13 38.39 38.09 35.26 41.96 47.05 12.83 0.09 38.92 37.11 38.69 24.17 56.76 55.83 57.17 17.71 9.12 30.09 11 E3_Ab KnownBoundary 0 201.29 133.13 136.51 103.25 138.71 132.82 116.72 116.49 90.51 114.00 94.50 41.56 18.51 94.00 95.31 122.36 94.34 169.30 126.87 138.64 38.67 17.94 85.79 12 ER3b ExonRegion 0 75.12 54.05 118.06 55.78 76.96 78.77 53.25 73.06 67.12 99.03 83.70 13.93 13.15 58.72 69.69 70.04 65.32 111.67 54.43 97.49 39.46 22.93 34.30 13 E3_Da NovelBoundary 1 100.83 51.37 142.31 62.83 27.76 14.65 20.80 129.38 66.49 89.50 66.65 0.00 6.82 60.57 15.20 28.62 21.79 154.62 36.05 100.73 35.09 42.80 48.74 14 E3a_E4a KnownJunction 0 8.52 20.85 49.17 20.81 10.70 4.77 8.52 12.57 21.33 48.11 35.64 5.85 27.27 24.07 72.32 45.89 96.96 50.03 24.28 38.67 13.41 6.00 16.48 15 I3 Intron 0 32.51 10.00 4.49 6.24 19.73 7.89 8.95 4.75 13.57 5.25 15.44 8.76 4.75 17.49 19.30 12.78 18.25 8.48 3.91 27.45 8.12 8.96 12.63 16 I3_AR1 ActiveIntronRegion 0 33.21 10.24 4.58 6.34 20.22 8.06 9.15 4.80 13.83 5.35 15.80 8.98 4.86 17.93 19.77 13.06 18.62 8.69 4.01 28.05 8.30 9.16 12.94 17 E4_Aa NovelBoundary 0 69.94 26.71 122.91 40.45 53.57 7.27 27.34 84.61 60.01 62.29 33.43 0.00 0.00 35.91 30.41 40.67 12.90 109.77 24.94 71.40 18.97 13.41 35.51 18 ER4a ExonRegion 0 29.60 24.67 102.99 41.70 30.07 23.54 15.11 58.74 46.31 87.64 67.22 7.94 14.88 64.80 103.46 65.66 63.64 85.68 56.07 96.87 29.45 29.00 34.90 19 E4_Da NovelBoundary 0 39.04 15.19 100.29 43.88 16.21 12.95 11.84 122.81 49.51 50.53 40.64 0.00 0.00 22.49 0.00 12.13 17.02 114.95 17.79 56.76 5.07 10.10 14.77 20 E4a_E5a KnownJunction 0 6.96 24.60 48.05 18.81 8.57 22.43 10.55 34.09 22.16 66.81 17.79 6.30 16.40 33.85 37.21 66.73 35.90 66.33 12.71 43.34 23.78 13.84 16.22 21 I4 Intron 0 11.85 6.32 4.54 3.79 14.98 3.42 4.94 4.81 8.01 5.31 25.25 0.00 0.00 15.33 5.52 5.55 0.00 10.32 13.87 15.88 4.11 6.48 7.31 22 I4_AR1 ActiveIntronRegion 0 12.09 6.48 4.64 3.85 15.35 3.51 5.06 4.90 8.17 5.42 25.83 0.00 0.00 15.71 5.66 5.68 0.00 10.56 14.21 16.28 4.19 6.62 7.45 23 E5_Aa NovelBoundary 0 70.01 18.88 118.03 54.57 62.73 24.70 11.97 112.21 71.99 70.59 35.85 0.00 0.00 24.55 13.97 10.85 13.46 136.92 53.08 82.64 13.65 29.70 19.38 24 ER5a ExonRegion 0 37.52 36.99 120.57 29.89 42.31 79.55 56.19 75.79 46.63 82.73 77.17 12.70 17.61 59.69 97.77 70.83 47.58 76.86 38.01 83.72 33.99 26.02 33.27 25 E5_Da NovelBoundary 0 71.05 30.92 188.34 108.01 45.33 33.05 20.40 186.68 123.26 119.29 59.12 0.00 0.00 47.91 26.70 26.23 16.74 173.77 87.53 89.74 14.58 21.43 42.43 26 E5a_E6a KnownJunction 0 24.52 48.35 72.38 36.03 39.98 143.27 83.07 24.40 33.80 60.65 49.28 34.66 19.64 43.50 106.43 63.91 61.06 53.14 34.82 77.92 45.10 23.21 19.72 27 I5 Intron 0 37.02 18.35 84.70 40.75 28.56 12.15 11.70 86.79 60.32 72.38 33.81 5.91 7.26 23.13 22.69 25.72 18.23 64.77 30.50 51.71 19.87 13.81 31.90 28 I5_AR1 ActiveIntronRegion 0 37.29 18.48 85.31 41.05 28.76 12.24 11.78 87.41 60.75 72.90 34.05 5.95 7.32 23.29 22.85 25.88 18.36 65.23 30.72 52.08 20.02 13.91 32.13 29 E6_Aa NovelBoundary 0 50.45 15.52 97.16 50.04 57.98 37.31 25.97 118.62 72.63 100.97 36.69 6.00 13.15 25.66 14.09 36.23 12.34 72.21 30.97 71.27 33.98 13.41 29.19 30 ER6a ExonRegion 0 25.61 54.41 71.50 37.10 31.51 54.86 52.26 37.67 36.52 85.10 58.89 30.84 13.50 80.34 103.79 94.44 60.83 66.82 56.43 70.69 38.54 25.17 25.29 31 E6_Da NovelBoundary 0 92.68 28.68 104.82 48.84 35.74 25.72 43.01 88.80 70.31 71.26 42.22 12.60 0.00 20.90 30.53 15.47 13.00 62.22 29.08 48.96 22.67 7.47 28.43 32 E6a_E7a KnownJunction 0 31.26 71.96 63.63 38.89 26.15 18.23 35.11 52.53 38.19 97.75 58.23 24.46 19.32 75.99 91.72 89.38 83.22 66.16 45.37 45.64 16.80 35.33 24.76 33 I6 Intron 0 19.51 14.99 8.98 1.25 13.15 7.89 13.83 7.91 4.52 9.45 9.50 2.19 4.92 10.45 5.03 9.13 10.14 9.62 11.74 19.61 5.42 1.28 18.04 34 I6_AR1 ActiveIntronRegion 0 19.99 15.36 9.18 1.28 13.41 8.08 14.15 8.09 4.64 9.66 9.71 2.24 5.04 10.65 5.16 9.36 10.39 9.85 12.03 20.09 5.55 1.31 18.34 35 E7_Aa NovelBoundary 0 54.82 17.83 81.40 41.12 55.26 10.85 22.35 90.81 65.45 87.76 48.17 0.00 0.00 26.90 0.00 16.15 9.44 80.59 39.06 55.48 13.84 17.15 43.79 36 ER7a ExonRegion 0 52.33 38.75 126.96 61.04 44.35 27.58 28.98 93.61 65.02 104.66 87.80 24.37 13.96 85.11 102.14 73.32 58.19 114.78 60.47 94.39 39.22 27.66 34.82 37 E7_Da NovelBoundary 0 34.67 40.72 125.13 94.29 42.70 26.58 16.78 126.38 84.89 100.92 54.43 6.15 0.00 50.03 22.00 31.02 12.62 133.31 38.31 122.85 24.96 14.14 27.49 38 E7a_E8a KnownJunction 0 29.26 36.11 102.86 45.48 26.66 17.55 9.67 39.64 28.96 90.71 42.06 25.21 20.45 37.20 121.89 76.56 59.47 99.90 60.71 52.67 34.66 19.17 12.80 39 I7 Intron 0 43.51 26.50 58.67 33.99 39.68 24.93 24.84 57.87 46.93 52.80 53.41 10.67 9.64 37.76 20.97 25.71 16.32 106.39 57.25 64.29 15.60 26.68 34.64 40 I7_AR1 ActiveIntronRegion 0 25.40 12.20 10.94 9.73 11.24 17.60 10.33 16.98 6.63 9.23 23.19 0.00 7.45 22.91 11.54 8.88 5.94 37.93 26.68 29.34 11.90 14.98 12.33 41 I7_SR1 SilentIntronRegion 0 64.32 40.49 53.60 35.46 76.66 41.64 44.40 66.58 58.51 54.93 66.84 13.97 18.89 44.07 22.89 30.11 18.45 132.22 68.99 85.46 10.78 28.38 51.29 42 I7_SR2 SilentIntronRegion 1 46.02 35.13 84.41 45.46 28.01 18.57 11.38 74.21 47.53 63.89 59.17 13.41 3.86 59.96 20.36 24.54 13.26 115.39 83.28 65.31 16.35 45.74 51.15 43 I7_SR3 SilentIntronRegion 0 32.88 17.45 77.46 40.39 25.27 16.00 20.00 64.42 57.27 69.05 54.26 11.73 4.57 30.91 24.41 31.08 21.25 114.79 51.34 63.20 21.77 23.32 24.23 44 E8_Aa NovelBoundary 0 64.16 26.84 110.61 51.18 12.90 37.71 27.47 124.25 59.37 83.08 92.76 12.30 0.00 44.09 30.41 11.79 8.60 162.50 103.91 90.44 22.30 31.84 28.08 45 ER8a ExonRegion 0 35.33 34.18 91.06 54.78 26.13 14.32 28.87 39.58 29.10 77.10 53.75 17.13 8.97 92.77 118.23 110.80 63.06 100.95 89.47 80.13 37.30 30.06 36.15 46 E8_Da NovelBoundary 0 32.23 9.54 69.54 36.29 23.60 4.88 12.28 74.75 30.56 44.35 22.85 0.00 0.00 4.77 15.20 11.28 15.90 97.13 32.28 40.14 8.65 14.45 18.69 47 E8a_E9a KnownJunction 0 49.49 35.06 79.89 73.22 35.99 2.90 33.03 45.14 28.33 63.77 34.27 20.11 0.00 78.05 109.28 65.88 49.56 63.17 30.21 74.21 24.71 33.13 32.18 48 E9_Aa NovelBoundary 0 13.41 18.62 29.57 13.55 23.68 15.79 15.99 46.00 27.03 53.80 7.84 0.00 0.00 19.72 39.06 23.75 13.09 62.18 37.18 43.02 13.41 2.57 15.62 49 ER9a ExonRegion 0 47.79 34.61 113.86 64.62 43.11 35.11 32.21 67.01 41.50 90.82 57.86 9.02 4.60 79.52 121.61 66.78 59.26 116.46 47.34 88.11 37.95 30.62 27.08 50 E9_Da NovelBoundary 0 26.15 20.92 37.11 13.65 12.99 5.45 23.85 41.57 32.06 35.78 11.42 5.70 0.00 9.65 19.16 3.16 11.97 51.78 8.47 32.47 8.71 3.12 11.61 51 E9a_E10a KnownJunction 0 66.31 48.28 120.75 66.23 40.58 23.79 28.71 51.42 65.54 105.30 40.96 6.30 13.15 48.09 123.25 61.01 73.40 102.02 21.37 58.48 34.97 20.21 17.07 52 I9 Intron 0 3.81 1.22 9.86 1.22 22.48 3.30 7.94 1.55 2.21 5.13 10.44 0.00 2.32 3.78 14.98 3.57 9.90 4.98 17.20 12.77 1.32 2.50 3.52 53 I9_SR1 SilentIntronRegion 0 3.95 1.26 10.21 1.26 23.30 3.42 8.20 1.60 2.29 5.27 10.77 0.00 2.40 3.92 15.53 3.70 10.26 5.16 17.83 13.23 1.37 2.59 3.65 54 E10_Aa NovelBoundary 0 9.56 6.45 43.58 18.95 7.22 16.81 9.54 49.62 25.72 38.90 15.16 5.55 0.00 9.59 32.88 20.34 0.00 87.84 26.07 50.49 5.68 17.08 11.01 55 ER10a ExonRegion 0 32.72 44.76 133.14 70.81 45.77 32.45 44.52 91.86 67.65 107.23 59.01 22.02 8.69 90.48 148.72 91.46 71.30 101.32 54.10 105.99 45.82 33.55 27.96 56 E10_Da NovelBoundary 0 16.89 9.34 35.75 14.18 24.45 4.54 4.50 31.59 24.28 24.98 16.43 0.00 0.00 7.36 14.71 4.36 4.77 54.51 34.45 17.26 9.08 8.33 12.55 57 E10a_E11a KnownJunction 0 30.45 29.99 101.80 44.98 33.19 22.32 12.32 44.81 48.03 65.97 32.11 7.65 6.82 34.14 108.04 69.21 57.41 61.31 40.66 84.24 22.98 22.66 24.76 58 I10 Intron 0 13.88 13.20 42.13 20.10 20.41 11.10 15.77 44.98 25.06 29.63 17.30 4.75 4.61 9.75 12.85 12.55 10.82 59.06 27.31 43.19 7.92 7.49 15.55 59 I10_SR1 SilentIntronRegion 0 14.66 14.16 44.08 21.37 20.87 11.19 16.70 46.27 26.40 31.10 16.82 5.34 5.18 10.24 13.07 13.46 11.38 60.62 28.35 44.97 8.48 7.51 16.67 60 I10_AR1 ActiveIntronRegion 0 7.69 5.59 26.99 10.06 17.10 10.58 8.45 35.36 14.57 18.14 21.71 0.00 0.00 5.92 11.27 5.33 6.41 47.49 19.37 29.44 3.47 7.50 6.65 61 E11_Aa NovelBoundary 0 6.82 6.18 41.19 18.05 31.15 20.39 10.20 43.70 44.13 39.62 14.48 18.01 0.00 20.84 8.90 22.30 8.23 54.76 17.22 70.82 13.78 16.72 7.77 62 ER11a ExonRegion 0 25.82 28.02 93.19 48.16 22.69 25.90 18.97 62.87 47.86 85.46 46.30 7.06 11.35 56.95 89.46 49.10 38.55 85.27 49.93 78.59 24.40 26.25 28.17