Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GCDH Gene 0 42.87 19.79 64.65 31.84 29.00 33.86 29.46 32.38 14.81 36.32 135.23 33.83 36.44 185.98 227.78 157.37 176.78 59.36 59.57 33.69 35.93 26.03 32.52 2 426001 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 2.95 2.42 0.00 0.00 0.00 0.00 4.02 4.77 1.66 0.00 0.00 0.00 0.00 3.33 3 422947 Transcript 0 9.66 10.52 1.80 1.15 7.56 5.54 8.01 1.56 2.77 1.23 4.71 4.72 4.01 6.56 8.35 11.11 7.59 5.50 11.00 9.17 3.14 6.30 8.43 4 222214 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 421816 Transcript 0 0.00 0.00 0.89 1.68 0.00 0.00 0.00 0.00 0.00 0.00 1.29 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 457854 Transcript 0 0.00 0.00 1.45 2.03 0.00 0.00 0.00 0.00 1.79 0.00 4.74 0.00 0.00 0.00 13.85 0.00 4.68 3.44 3.48 0.00 0.00 0.00 4.18 7 ER1a ExonRegion 1 37.75 12.72 10.46 6.12 41.19 44.31 27.71 9.85 2.81 4.96 46.25 0.00 0.00 98.47 95.27 90.34 56.58 29.22 39.63 15.19 18.40 14.10 17.96 8 E1a_E2a KnownJunction 1 159.21 56.57 26.02 20.24 140.07 157.58 95.92 25.88 10.94 17.54 146.88 0.00 0.00 333.39 284.32 268.56 186.07 84.61 146.36 46.40 60.73 43.60 68.63 9 ER2a ExonRegion 1 33.31 9.73 15.65 7.36 34.06 31.19 19.87 9.20 5.34 9.13 64.03 7.90 2.93 81.27 80.79 69.57 89.63 32.00 35.78 16.41 20.56 13.00 13.02 10 E2a_E3a KnownJunction 1 7.11 0.00 6.71 7.42 0.00 5.62 2.25 13.80 6.63 11.01 110.76 0.00 0.00 63.69 67.74 28.11 111.73 1.74 8.28 22.50 47.88 10.96 0.00 11 E2a_E4a KnownJunction 0 0.00 0.00 1.77 3.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER3a ExonRegion 1 9.29 0.34 13.75 3.41 6.62 2.45 3.60 14.26 9.37 16.82 170.26 6.13 3.65 99.21 119.68 41.11 185.95 11.14 32.83 27.01 58.64 12.85 2.37 13 E3_Da NovelBoundary 0 0.00 0.00 2.75 2.06 0.00 8.12 3.67 6.94 4.31 2.63 23.16 7.65 0.00 16.54 31.89 15.64 22.35 16.25 30.31 9.27 11.24 11.08 7.26 14 E3a_E4a KnownJunction 1 10.82 0.00 17.77 8.49 11.80 0.00 8.52 18.77 9.90 20.28 177.41 25.51 25.65 143.68 159.96 65.37 227.12 22.68 63.81 37.33 53.56 17.21 4.01 15 I3 Intron 0 8.76 2.69 8.16 4.71 5.76 3.64 6.58 3.41 1.83 6.79 10.56 3.20 6.58 18.00 35.35 24.62 27.33 11.40 15.30 5.28 6.93 5.53 7.78 16 I3_AR1 ActiveIntronRegion 0 8.82 2.71 8.22 4.74 5.80 3.67 6.62 3.43 1.84 6.84 10.63 3.23 6.62 18.11 35.57 24.78 27.51 11.48 15.40 5.32 6.98 5.56 7.83 17 E4_Aa NovelBoundary 0 20.45 2.63 26.94 8.66 3.57 12.49 6.40 10.80 4.75 18.43 7.84 11.70 0.00 28.14 44.75 59.30 35.34 18.70 34.07 5.62 8.77 5.45 20.66 18 ER4a ExonRegion 0 25.19 14.25 52.85 26.25 25.48 32.16 25.62 26.35 9.35 34.54 143.03 20.23 25.27 206.00 217.53 172.53 158.35 77.86 75.65 35.83 40.16 32.01 35.85 19 E4a_E5a KnownJunction 0 41.04 19.08 87.81 30.20 105.60 153.43 100.65 41.48 13.63 49.99 215.42 25.06 40.09 301.20 279.50 198.58 257.41 66.33 112.85 70.12 75.43 31.66 19.21 20 E4a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 8.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.59 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 21 E4a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.58 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 ER5a ExonRegion 0 21.17 19.46 64.98 19.92 70.33 92.07 60.02 40.60 13.66 42.49 186.33 24.95 46.30 196.65 203.87 129.22 187.16 43.94 69.07 47.92 58.73 22.46 10.35 23 E5_Da NovelBoundary 0 7.26 0.00 7.89 3.53 4.33 2.84 8.66 6.74 7.84 3.87 2.37 6.00 0.00 2.47 13.35 15.55 32.26 27.44 14.02 7.86 2.41 4.71 8.71 24 E5a_E7a KnownJunction 0 18.97 31.38 56.18 26.30 14.52 20.50 22.79 31.38 11.57 36.51 156.67 56.57 39.61 154.87 152.42 91.60 138.29 31.30 40.47 39.69 35.65 13.72 13.83 25 ER6a ExonRegion 0 28.99 31.55 5.41 3.45 14.01 16.63 24.02 2.58 5.34 3.69 14.14 14.16 12.04 15.09 25.05 33.32 22.77 13.94 32.99 27.50 9.41 18.89 25.28 26 E6_Da NovelBoundary 1 207.15 173.32 42.02 37.46 150.76 102.33 233.75 29.61 25.03 21.44 58.17 22.96 89.60 47.38 50.56 133.73 136.14 45.47 112.10 151.23 112.00 39.80 110.46 27 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.09 2.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER7a ExonRegion 0 33.88 21.11 69.04 26.86 13.21 18.79 26.61 34.06 16.95 47.22 179.32 32.18 39.99 223.43 239.62 169.79 200.39 48.03 64.88 32.21 44.40 31.29 32.03 29 E7_Da NovelBoundary 0 3.56 6.38 6.74 15.88 7.89 13.12 16.96 5.91 4.22 11.17 4.90 0.00 20.45 11.89 18.30 23.41 27.02 18.53 13.18 14.64 6.12 0.00 3.76 30 E7a_E8a KnownJunction 0 66.68 15.79 62.68 18.18 15.03 28.28 30.78 40.42 8.30 57.48 168.57 25.21 56.17 240.04 275.17 139.11 177.28 71.71 69.37 25.63 34.29 27.80 23.56 31 I7 Intron 0 10.02 4.21 7.29 6.91 5.14 3.80 6.26 7.23 2.45 6.32 3.71 3.80 6.28 12.95 14.63 25.92 18.54 14.12 17.89 9.12 5.53 2.77 6.08 32 I7_AR1 ActiveIntronRegion 0 12.36 4.98 9.28 8.79 6.04 4.49 6.48 9.21 3.12 8.04 4.73 2.83 7.27 15.46 17.47 31.32 22.98 17.98 20.38 10.41 7.04 2.74 7.18 33 E8_Aa NovelBoundary 0 0.00 2.96 9.99 9.82 3.65 0.00 5.74 1.93 0.00 0.00 5.16 6.30 0.00 14.13 4.45 3.76 16.36 20.06 3.76 9.78 2.78 0.00 3.41 34 ER8a ExonRegion 0 71.16 24.23 89.42 37.69 23.65 44.52 33.68 38.98 22.59 49.03 199.71 42.03 73.96 234.55 266.45 215.89 238.32 99.95 73.29 37.72 56.11 32.89 43.87 35 E8a_E9a KnownJunction 0 67.27 18.55 111.41 37.39 23.43 49.63 56.48 44.20 25.06 46.10 165.62 53.12 26.62 267.59 281.11 283.43 191.30 61.85 69.08 36.75 53.75 25.29 57.45 36 E8a_E9b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 2.95 2.42 0.00 0.00 0.00 0.00 4.02 4.77 1.66 0.00 0.00 0.00 0.00 3.33 37 ER9a ExonRegion 0 50.68 15.82 90.13 34.07 23.93 52.72 53.11 41.87 21.07 38.90 149.69 68.43 38.82 233.42 237.34 225.47 201.81 85.10 55.39 31.09 51.48 21.01 40.95 38 E9_Ab KnownBoundary 0 76.46 26.97 90.86 39.19 50.08 79.27 71.23 43.99 19.21 34.54 154.30 62.42 52.92 279.83 249.83 200.20 271.72 112.09 54.21 34.71 54.43 26.45 41.40 39 ER9b ExonRegion 0 44.62 21.07 71.73 39.64 28.27 49.99 38.67 33.92 15.69 37.68 176.11 39.28 49.08 227.50 249.07 183.16 224.52 93.31 63.28 40.05 48.57 26.98 34.87 40 E9_Da NovelBoundary 0 19.86 2.70 9.55 2.96 4.24 5.34 10.02 0.00 0.00 2.95 14.53 0.00 0.00 11.48 19.53 15.81 18.51 8.71 0.00 2.81 0.00 2.82 0.00 41 E9a_E10a KnownJunction 0 55.57 21.25 72.53 47.31 34.97 36.12 37.54 22.30 16.15 40.37 168.15 23.26 32.95 217.02 271.22 157.91 165.31 83.03 56.10 30.74 25.08 31.05 44.73 42 E10_Aa NovelBoundary 0 25.12 5.46 12.39 5.49 0.00 0.00 1.99 3.61 3.33 5.26 10.11 0.00 0.00 21.07 17.80 45.03 22.72 22.97 9.22 17.45 6.12 2.63 0.00 43 ER10a ExonRegion 0 43.96 19.85 73.59 39.18 31.26 24.86 24.40 26.59 11.80 38.79 150.60 24.64 37.16 211.82 257.74 209.88 229.38 93.88 64.93 40.30 35.22 25.26 31.68 44 E10a_E11a KnownJunction 0 83.13 18.15 64.52 31.86 39.47 21.69 48.27 33.56 14.12 49.45 141.98 30.76 26.78 270.47 289.14 212.94 200.47 97.13 90.07 63.73 21.13 31.05 22.71 45 ER11a ExonRegion 0 56.71 16.28 69.77 34.87 24.68 37.61 34.19 31.11 17.48 42.60 165.43 30.44 25.13 253.85 331.43 198.05 229.23 78.90 64.97 34.94 32.65 31.10 45.10 46 E11a_E12a KnownJunction 0 33.19 24.14 92.58 40.32 19.69 38.84 25.57 25.71 11.52 29.41 146.62 18.16 47.07 224.09 285.43 221.74 206.36 50.32 38.12 34.71 30.95 19.96 21.77 47 E12_Aa NovelBoundary 0 6.08 0.00 15.32 5.69 3.82 5.39 1.81 10.43 1.36 5.05 4.84 0.00 0.00 23.54 8.90 29.05 14.31 8.21 4.80 11.95 5.37 9.06 11.78 48 ER12a ExonRegion 0 60.52 28.94 92.92 43.62 41.76 43.35 38.21 31.31 12.63 45.84 157.80 57.06 42.09 265.24 339.70 195.22 230.00 66.79 54.59 44.02 35.25 27.09 43.47 49 E12_Da NovelBoundary 0 3.04 2.50 17.12 5.86 3.31 2.21 6.32 6.94 0.00 7.44 5.16 0.00 0.00 4.65 13.35 0.00 3.83 20.85 8.09 10.87 5.44 5.63 3.67 50 E12a_E13a KnownJunction 0 92.98 35.78 97.54 42.92 45.84 38.33 53.04 35.65 16.93 50.07 138.19 49.07 27.27 290.37 390.51 260.36 222.63 41.99 73.13 29.59 28.42 22.41 55.23 51 E12a_E13b KnownJunction 0 0.00 0.00 1.45 2.03 0.00 0.00 0.00 0.00 1.79 0.00 4.74 0.00 0.00 0.00 13.85 0.00 4.68 3.44 3.48 0.00 0.00 0.00 4.18 52 I12_AR1 ActiveIntronRegion 0 7.13 3.40 6.49 8.61 5.55 4.24 7.84 4.13 3.45 4.24 4.16 2.35 5.18 9.60 13.27 9.03 6.49 13.42 13.66 8.87 3.51 1.81 3.73 53 I12_SR2 SilentIntronRegion 0 1.28 6.31 1.51 13.34 5.74 1.45 16.88 1.58 1.88 2.01 10.83 8.66 6.25 6.43 8.58 11.89 7.29 10.01 2.46 10.99 6.24 1.39 5.57 54 E13_Aa NovelBoundary 0 3.78 9.47 19.90 19.08 10.87 4.77 12.59 7.31 6.80 5.96 17.16 0.00 6.17 16.78 37.46 7.78 4.39 28.44 37.65 23.46 5.31 0.00 11.27 55 ER13a ExonRegion 0 50.44 21.44 95.36 46.78 36.76 32.72 30.05 48.92 20.43 50.34 140.80 42.57 41.06 230.17 332.01 199.48 222.18 54.56 65.16 33.84 36.56 30.05 41.04 56 E13_Ab KnownBoundary 0 49.64 13.62 130.33 72.29 74.87 45.43 35.15 71.80 30.44 63.82 131.88 69.62 40.09 177.53 217.32 163.38 196.07 51.44 78.31 35.79 30.27 49.05 38.07 57 ER13b ExonRegion 0 39.01 17.48 62.77 39.93 27.03 20.50 19.32 46.22 19.04 34.33 87.60 45.46 45.03 112.62 172.31 116.03 113.70 35.38 59.82 29.40 22.76 23.70 27.15