Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 USE1 Gene 0 95.41 34.33 165.18 58.58 45.33 32.03 20.64 73.84 56.11 108.11 52.01 28.36 31.68 88.81 133.77 91.47 81.08 80.07 70.59 40.54 117.39 54.84 84.53 2 445667 Transcript 0 0.76 3.78 2.80 2.92 1.53 2.23 1.13 2.84 0.09 3.69 1.79 0.00 0.00 0.46 2.07 2.55 0.00 7.00 2.05 1.98 2.52 0.15 0.00 3 379776 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 263897 Transcript 0 85.95 53.94 239.59 98.74 57.39 36.30 27.32 111.14 82.82 151.49 61.57 42.11 55.00 158.43 251.81 127.57 103.08 95.03 118.02 55.54 128.70 93.27 123.85 5 IG16 Intergenic 0 4.39 3.57 21.80 15.83 10.25 4.63 2.45 7.31 11.28 11.47 2.96 1.27 1.74 3.62 2.20 6.30 2.97 13.94 3.01 9.68 7.84 1.31 9.79 6 IG16_SR1 SilentIntergenicRegion 0 2.68 1.58 17.97 8.42 7.90 1.45 1.33 3.10 7.88 9.63 2.49 0.38 1.22 3.37 2.31 5.39 2.78 10.11 2.69 5.91 3.72 1.10 7.01 7 IG16_AR1 ActiveIntergenicRegion 0 7.52 10.45 29.11 22.96 17.05 6.98 5.28 8.27 16.18 12.04 8.30 4.66 2.53 4.04 4.39 7.20 0.63 16.23 0.61 10.15 8.98 0.88 14.76 8 IG16_SR2 SilentIntergenicRegion 0 5.43 4.34 24.14 21.22 11.35 7.03 3.01 10.80 13.53 13.00 2.64 1.58 2.08 3.78 1.81 6.96 3.47 16.95 3.63 12.87 11.23 1.56 11.51 9 ER1a ExonRegion 0 50.46 20.32 48.37 20.89 23.50 16.65 13.45 16.37 20.46 28.80 29.80 2.24 4.63 25.97 43.82 31.81 47.76 19.89 16.93 18.18 71.13 19.19 32.12 10 E1a_E2a KnownJunction 0 13.71 12.30 76.55 42.45 14.69 0.00 6.09 40.09 36.34 34.20 21.53 0.00 13.96 37.55 13.23 19.23 11.50 33.41 4.33 28.63 60.79 6.00 11.18 11 I1_AR1 ActiveIntronRegion 0 5.33 7.56 0.00 0.00 9.28 18.97 8.29 0.00 0.18 0.76 0.00 0.00 0.00 6.32 11.61 3.74 2.89 2.69 24.03 5.49 1.74 5.22 14.61 12 E2_Aa NovelBoundary 0 27.41 9.47 8.28 5.56 42.28 37.65 23.36 20.21 10.79 33.98 8.48 0.00 0.00 10.01 10.38 12.65 4.11 31.34 26.54 3.00 5.50 3.06 31.07 13 ER2a ExonRegion 1 19.43 7.77 116.53 34.97 17.12 15.18 9.08 57.73 46.51 72.32 81.53 17.06 12.76 58.14 52.22 40.84 125.24 73.43 35.36 38.60 162.24 24.75 48.92 14 E2a_E3a KnownJunction 1 38.08 5.92 144.14 28.93 26.49 37.71 20.71 71.51 47.92 105.92 120.50 31.81 12.99 91.59 112.86 59.73 194.11 102.39 37.37 62.19 252.11 53.52 81.27 15 ER3a ExonRegion 0 72.44 17.43 187.28 56.59 36.11 39.11 25.98 95.15 57.78 132.63 71.93 37.70 35.20 138.28 167.35 152.37 107.38 145.34 106.21 56.96 146.78 83.87 156.01 16 E3a_E4a KnownJunction 0 94.02 22.04 220.34 81.21 28.35 44.41 33.87 102.73 78.47 145.32 66.75 72.77 40.09 112.19 193.21 171.58 77.70 150.64 76.33 76.00 102.55 77.58 172.77 17 ER4a ExonRegion 0 89.03 34.25 190.14 60.21 37.11 40.67 23.39 74.83 56.31 121.93 51.91 43.52 40.25 108.96 157.88 102.90 91.93 90.47 63.04 54.11 120.67 54.02 88.58 18 E4a_E5a KnownJunction 1 139.21 100.51 236.66 75.78 71.82 53.55 26.19 91.23 38.86 126.68 65.49 95.13 112.98 127.32 182.83 80.83 110.89 97.75 73.23 43.53 144.19 67.66 76.40 19 ER5a ExonRegion 0 92.49 91.31 221.55 71.14 61.81 45.84 29.79 89.71 50.64 125.36 62.82 67.97 80.67 125.06 194.38 84.71 97.38 77.24 49.05 39.36 146.55 59.38 72.24 20 ER5b ExonRegion 0 0.76 3.78 2.80 2.92 1.53 2.23 1.13 2.84 0.09 3.69 1.79 0.00 0.00 0.46 2.07 2.55 0.00 7.00 2.05 1.98 2.52 0.15 0.00 21 I5 Intron 0 13.33 20.45 28.08 15.75 19.77 12.00 11.39 20.90 14.50 30.22 6.31 5.80 2.34 14.62 22.22 16.56 12.00 36.72 22.38 18.57 20.55 11.10 30.24 22 I5_AR1 ActiveIntronRegion 0 13.39 20.53 28.22 15.82 19.87 12.05 11.44 21.00 14.56 30.37 6.34 5.83 2.35 14.69 22.31 16.64 12.05 36.89 22.47 18.66 20.64 11.15 30.38 23 E6a_E7a KnownJunction 0 106.98 101.50 191.00 71.12 40.83 50.65 51.67 80.38 60.73 105.97 49.75 31.36 20.94 97.89 181.96 62.72 107.53 57.66 44.14 30.36 124.42 47.39 75.12 24 ER6a ExonRegion 0 70.15 90.78 198.99 65.42 48.35 36.35 33.38 72.72 49.80 114.24 52.53 58.76 46.57 115.08 185.68 69.53 102.45 56.69 46.53 22.26 131.44 54.25 76.98 25 I6 Intron 0 34.64 24.60 7.36 3.85 6.98 3.48 7.54 5.50 6.55 10.95 4.59 6.28 4.58 10.04 12.39 14.10 3.92 11.99 17.38 6.57 12.01 10.38 15.33 26 I6_AR1 ActiveIntronRegion 0 11.73 22.56 10.76 5.64 6.50 3.82 5.97 8.04 9.57 16.01 1.34 6.45 4.02 11.42 10.42 6.19 4.58 16.25 9.95 8.13 8.41 10.12 10.19 27 I6_SR1 SilentIntronRegion 1 86.68 29.86 0.00 0.00 8.27 2.83 11.25 0.00 0.00 0.00 11.95 6.10 5.97 7.23 17.14 32.15 2.55 2.86 34.46 3.29 20.37 11.27 27.19 28 E7_Aa NovelBoundary 0 47.56 40.39 53.01 22.51 11.63 23.68 1.81 19.22 16.20 43.84 0.00 6.30 0.00 11.24 4.45 7.18 4.77 20.19 31.25 11.12 5.87 11.70 19.97 29 ER7a ExonRegion 0 91.01 43.62 252.85 94.08 64.71 43.10 24.12 113.74 79.58 165.86 57.51 40.50 42.13 124.82 211.63 128.85 85.41 113.11 92.48 54.20 136.63 74.08 115.13 30 E7a_E8a KnownJunction 0 59.86 16.71 274.92 131.02 66.64 15.16 6.18 139.28 108.16 182.63 77.44 54.47 101.94 252.58 361.83 191.15 116.32 114.33 217.42 82.07 125.04 158.35 181.31 31 I7 Intron 0 14.29 12.20 0.00 0.00 0.00 0.00 1.99 0.00 0.00 0.00 1.45 0.00 0.00 0.00 4.86 4.46 2.48 2.77 23.89 3.19 1.65 0.00 13.21 32 I7_SR1 SilentIntronRegion 0 14.50 12.38 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 1.47 0.00 0.00 0.00 4.94 4.52 2.51 2.81 24.25 3.24 1.68 0.00 13.41 33 E8_Aa NovelBoundary 0 18.15 25.92 31.90 23.17 20.80 15.10 9.89 15.61 13.86 27.40 6.84 7.65 0.00 2.41 0.00 4.36 4.77 32.29 20.24 13.04 10.81 2.63 24.07 34 ER8a ExonRegion 0 179.35 42.36 171.26 65.83 64.96 30.40 21.24 84.71 71.18 116.16 52.92 22.13 38.96 81.57 126.05 96.62 76.39 76.35 104.83 35.59 117.29 67.33 85.35 35 IG17_SR1 SilentIntergenicRegion 0 4.95 8.74 4.30 2.39 5.21 2.88 1.56 5.05 3.61 16.76 2.27 4.20 0.00 1.05 3.68 1.17 1.29 2.89 7.50 3.34 6.92 2.45 13.82 36 IG17_AR3 ActiveIntergenicRegion 0 1.90 2.43 7.59 2.63 2.93 1.07 1.38 8.52 4.93 10.44 0.82 1.09 1.14 1.38 2.22 5.62 3.00 14.89 4.18 4.92 4.88 1.89 8.40