Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC006538.3 Gene 0 8.76 5.22 2.27 1.88 5.74 2.71 5.65 2.20 1.86 1.44 2.49 5.07 8.83 3.47 8.64 11.78 6.04 2.37 3.85 6.99 3.07 2.13 6.54 2 499536 Transcript 0 9.13 13.93 24.08 21.05 11.19 5.54 11.26 17.88 18.07 14.97 4.54 35.93 114.21 7.57 17.29 7.22 10.02 24.42 4.23 17.55 6.08 1.60 8.82 3 500742 Transcript 0 18.15 17.45 4.71 6.80 12.53 8.04 18.78 4.01 4.19 2.90 7.09 10.89 6.67 8.56 11.60 19.93 15.56 7.61 14.87 18.97 9.30 7.19 25.60 4 ER1a ExonRegion 0 9.75 8.05 2.01 1.34 12.91 4.84 6.68 1.70 1.62 1.50 4.62 5.67 6.13 5.80 7.83 7.79 10.88 1.22 6.32 12.63 5.35 2.29 7.11 5 E1_Da NovelBoundary 0 14.45 29.21 18.12 31.23 11.38 2.67 14.31 28.38 36.81 19.56 4.95 0.00 0.00 0.00 0.00 8.54 4.49 32.87 19.01 15.79 0.00 8.57 42.68 6 E1a_E2a KnownJunction 0 0.00 6.71 10.41 36.79 0.00 0.00 0.00 24.15 20.63 14.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.57 0.00 3.26 3.03 0.00 8.28 7 Ix_SR1 SilentIntronRegion 0 3.45 2.49 13.03 2.49 0.55 0.37 0.27 1.05 2.63 5.23 0.39 0.00 2.36 0.55 2.58 4.24 1.35 2.62 2.60 2.17 0.00 0.85 1.80 8 Ix_AR1 ActiveIntronRegion 0 5.96 1.15 13.88 4.00 3.02 1.03 2.98 0.73 5.19 2.41 1.09 6.03 0.00 0.00 3.13 5.86 2.79 0.78 1.80 0.60 3.10 0.59 5.79 9 Ix_SR1 SilentIntronRegion 0 13.84 2.66 7.96 3.10 6.41 4.00 1.44 4.49 2.41 1.49 3.79 2.33 1.68 4.56 9.62 5.18 5.04 0.60 2.78 3.71 0.96 6.81 1.92 10 Ix Intron 0 7.77 4.02 35.74 6.31 5.92 1.38 1.74 7.63 9.09 8.28 4.00 2.08 2.73 2.54 12.81 12.45 5.90 5.66 6.44 3.80 6.12 6.47 5.12 11 Ix_SR1 SilentIntronRegion 0 7.78 4.03 35.80 6.32 5.93 1.38 1.75 7.65 9.11 8.29 4.01 2.09 2.73 2.54 12.83 12.47 5.91 5.67 6.46 3.81 6.13 6.48 5.13 12 ER2a ExonRegion 0 2.29 2.28 0.20 0.16 3.69 0.15 3.87 0.00 0.00 0.00 1.66 73.08 237.97 16.47 51.35 0.24 1.98 0.85 0.25 3.79 4.58 1.04 2.88 13 E2_Da NovelBoundary 0 807.33 697.31 397.06 463.41 747.37 474.73 989.82 428.69 349.24 326.72 233.95 628.55 936.63 522.40 866.80 617.10 448.43 427.88 394.36 875.54 344.59 209.23 446.62 14 E2a_E5b KnownJunction 0 23.86 48.61 104.76 64.79 33.70 20.50 41.65 60.79 65.91 57.16 13.64 95.43 319.95 11.24 16.32 11.79 31.60 106.45 12.33 62.13 14.95 3.12 21.94 15 Ix Intron 0 27.12 0.26 20.58 4.16 2.06 1.88 1.02 5.94 10.85 1.75 81.24 18.28 10.75 60.09 45.88 13.71 22.84 0.35 1.22 0.00 3.11 11.21 9.78 16 Ix_AR1 ActiveIntronRegion 0 27.26 0.26 20.69 4.19 2.07 1.89 1.02 5.97 10.90 1.76 81.64 18.37 10.80 60.40 46.11 13.78 22.96 0.35 1.23 0.00 3.12 11.26 9.83 17 E3_Aa NovelBoundary 0 3.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.18 0.00 0.00 0.00 0.00 2.18 0.00 19.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E3_Da NovelBoundary 0 47.71 2.50 32.73 40.92 23.43 2.73 7.68 15.07 12.27 2.53 53.28 32.41 13.64 53.27 70.21 170.72 35.62 1.66 0.00 6.52 8.83 2.76 7.94 20 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E4_Aa NovelBoundary 0 41.27 25.85 36.60 30.27 7.64 2.50 6.01 6.98 4.77 1.67 58.44 26.11 12.50 47.09 107.42 175.08 21.97 5.02 0.00 8.63 8.15 5.51 12.04 22 ER4a ExonRegion 0 0.01 0.17 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.03 0.24 0.00 0.00 0.00 0.01 0.00 0.00 0.00 23 E4_Da NovelBoundary 0 46.16 34.34 13.01 23.41 23.68 16.13 20.18 3.24 5.90 6.34 25.06 23.86 12.34 40.91 22.62 43.32 33.94 9.70 7.15 15.79 5.75 21.37 14.08 24 E4a_E5a KnownJunction 0 0.00 8.16 8.37 18.55 4.07 0.00 4.81 1.73 2.60 1.13 14.95 36.76 0.00 28.49 0.00 18.97 8.13 1.74 6.96 6.90 7.85 2.14 7.26 25 Ix_AR2 ActiveIntronRegion 0 15.38 0.00 0.00 0.00 2.02 0.00 3.91 1.73 0.00 0.00 2.92 2.01 5.38 0.00 0.00 18.20 0.00 0.00 0.00 0.00 1.99 0.00 0.00 26 E5_Aa NovelBoundary 0 19.71 11.64 5.82 5.73 18.08 17.26 6.93 15.90 5.06 6.72 6.79 12.00 32.30 14.89 4.33 3.25 7.67 8.46 4.05 10.04 7.48 2.76 4.01 27 ER5a ExonRegion 0 13.79 7.59 2.12 1.59 2.85 7.64 7.68 1.93 1.19 2.85 2.58 10.97 17.59 6.79 14.84 9.21 6.44 3.82 4.25 9.54 3.01 3.79 7.68 28 ER5b ExonRegion 0 50.80 17.10 10.94 8.18 25.87 14.81 43.45 12.29 5.95 9.68 9.88 70.23 198.54 24.66 31.91 22.79 41.20 16.36 23.36 63.20 26.20 18.06 35.57 29 ER5c ExonRegion 0 95.08 88.79 17.78 20.50 68.25 40.58 100.18 20.43 21.35 13.45 25.03 17.61 22.46 15.99 54.73 91.13 78.77 40.12 78.01 97.37 44.97 37.20 138.67 30 E5_Db NovelBoundary 0 880.38 721.85 2858.71 3034.65 734.81 502.84 857.60 3124.58 3290.82 2666.56 315.76 79.23 95.45 62.69 310.53 930.01 640.95 3998.80 895.56 746.49 455.24 515.52 793.11 31 Ix_AR1 ActiveIntronRegion 0 11.30 0.84 3.48 2.29 2.21 0.00 0.41 0.80 2.96 0.00 2.00 1.84 3.68 1.00 6.39 23.95 3.14 0.00 1.32 0.44 0.00 0.00 0.00 32 Ix Intron 0 15.76 2.08 2.83 2.78 5.11 0.49 0.79 0.72 0.88 0.14 3.90 10.04 6.73 4.29 9.28 23.01 3.17 0.12 0.07 1.28 0.28 0.22 0.58 33 Ix_SR1 SilentIntronRegion 0 14.14 2.33 2.26 2.06 3.10 0.28 0.45 0.94 0.93 0.12 3.24 6.55 4.91 2.63 6.38 17.05 2.14 0.06 0.00 1.18 0.31 0.15 0.31 34 Ix_AR1 ActiveIntronRegion 0 6.53 1.01 4.20 4.04 9.66 0.00 0.88 0.43 1.52 0.57 2.18 11.51 6.40 2.59 12.05 28.40 5.47 0.00 0.00 2.11 0.36 0.00 0.49 35 Ix_SR2 SilentIntronRegion 0 18.14 2.05 3.08 3.15 6.24 0.61 1.00 0.56 0.91 0.12 3.99 12.47 8.62 4.94 10.66 25.07 3.19 0.18 0.09 1.22 0.22 0.28 0.65 36 Ix_AR2 ActiveIntronRegion 0 6.16 1.51 2.13 1.28 4.30 0.27 0.39 0.75 0.00 0.00 7.79 19.58 2.90 12.01 16.79 23.50 5.31 0.00 0.00 0.62 0.00 0.00 0.43 37 Ix_SR3 SilentIntronRegion 0 12.06 1.84 3.08 3.11 4.41 0.65 0.73 1.01 0.58 0.27 4.93 4.61 2.91 4.37 8.21 29.42 5.32 0.00 0.25 1.92 0.52 0.25 1.15 38 Ix Intron 0 15.72 1.79 3.55 3.36 5.26 0.36 0.86 0.92 0.92 0.19 3.43 5.99 7.52 2.68 11.82 29.95 4.41 0.24 0.07 1.72 0.23 0.11 0.66 39 Ix_SR1 SilentIntronRegion 0 15.72 1.79 3.55 3.36 5.26 0.36 0.86 0.92 0.92 0.19 3.43 5.99 7.52 2.68 11.82 29.96 4.41 0.24 0.07 1.72 0.23 0.11 0.66 40 E6_Aa NovelBoundary 0 829.48 622.39 1350.16 1695.82 756.45 468.76 892.48 1806.23 1583.17 1294.13 223.43 212.32 240.24 122.08 188.76 694.43 601.03 2049.29 810.28 808.04 411.50 385.59 744.45 41 ER6a ExonRegion 0 9.77 4.00 3.02 2.16 5.64 2.20 4.11 2.78 2.17 1.71 2.76 5.45 7.03 4.33 10.94 16.30 5.63 2.01 2.27 5.92 2.50 1.56 3.90