Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC006273.1 Gene 0 14.27 15.17 4.03 5.82 9.11 8.75 14.46 4.91 2.53 3.16 4.04 8.90 13.58 9.51 19.63 16.49 10.05 4.88 11.41 13.21 7.10 4.48 12.09 2 442073 Transcript 0 8.31 7.82 2.52 2.93 4.35 5.53 7.04 1.84 0.95 1.18 3.54 10.70 14.23 7.45 15.53 8.78 3.76 2.63 6.51 7.93 3.43 3.09 6.07 3 ER1a ExonRegion 0 10.04 7.24 2.04 1.03 3.17 7.61 5.50 0.00 0.00 0.00 6.88 24.92 23.72 9.99 21.59 8.81 0.00 2.73 7.56 10.09 2.61 3.61 5.22 4 E1_Da NovelBoundary 0 216.71 244.50 175.69 261.54 291.60 163.20 300.35 233.71 287.18 200.04 59.01 63.47 83.11 44.21 65.02 258.39 200.65 190.77 171.39 178.39 163.09 93.44 185.84 5 E1a_E3a NovelJunction 0 13.11 24.67 10.35 13.15 26.74 10.39 27.73 21.28 23.90 23.50 2.63 0.00 0.00 21.07 4.33 15.89 8.04 14.80 20.33 22.18 5.68 8.76 3.24 6 Ix Intron 0 11.35 0.63 9.47 2.05 6.82 1.61 2.91 8.38 4.37 4.66 4.84 4.17 5.20 8.69 19.28 11.89 14.95 3.71 4.62 2.34 15.11 7.33 17.69 7 Ix_SR1 SilentIntronRegion 0 11.46 0.68 9.62 2.13 7.12 1.76 2.98 8.81 4.53 4.92 5.28 4.25 5.49 9.23 20.12 11.98 15.38 3.74 4.73 2.45 15.80 7.95 18.28 8 Ix_AR1 ActiveIntronRegion 0 11.83 0.00 5.78 1.08 2.63 0.00 1.91 2.39 2.02 1.00 0.00 2.89 3.13 1.86 4.51 11.84 10.58 3.31 3.79 1.01 4.41 0.00 11.79 9 Ix_SR1 SilentIntronRegion 0 4.21 1.10 8.92 4.04 2.42 0.99 1.92 8.38 4.32 8.35 3.50 1.29 1.40 3.16 14.32 6.45 8.36 4.65 1.73 1.15 19.13 10.54 27.09 10 I1 Intron 0 51.32 44.24 47.62 21.85 29.29 27.83 17.42 21.28 29.08 26.02 85.49 26.47 50.64 92.96 180.51 58.09 116.99 41.38 60.27 36.78 147.71 87.65 51.90 11 I1_AR3 ActiveIntronRegion 0 245.47 213.15 228.71 103.55 143.36 136.18 84.29 99.71 136.05 120.95 413.91 127.13 247.75 453.56 871.33 284.26 568.59 194.19 286.68 176.82 713.65 426.33 229.18 12 Ix_AR5 ActiveIntronRegion 0 22.11 6.10 12.53 8.03 15.46 0.00 1.18 16.32 7.89 12.87 20.30 4.33 7.56 7.67 50.45 20.97 35.21 20.53 11.86 9.81 20.08 7.76 19.90 13 Ix_AR2 ActiveIntronRegion 0 6.97 3.47 2.56 3.69 2.52 1.89 2.30 0.97 8.06 3.98 15.75 8.40 16.42 11.80 17.83 12.50 5.34 11.63 8.06 4.69 11.02 8.27 11.23 14 Ix Intron 0 209.44 1.22 1.18 5.32 47.44 5.98 12.73 19.13 9.72 2.27 49.21 17.04 28.97 56.83 46.38 59.20 45.63 1.30 1.23 0.64 0.00 0.98 0.25 15 Ix_AR2 ActiveIntronRegion 0 120.10 1.61 1.45 5.83 44.24 5.45 11.01 23.97 11.48 2.88 41.73 9.86 13.09 60.77 42.21 58.27 43.80 1.36 1.26 0.42 0.00 0.62 0.00 16 Ix_SR1 SilentIntronRegion 0 279.46 0.93 0.97 4.95 50.18 6.43 14.13 15.51 8.42 1.82 55.25 22.68 41.36 54.13 49.86 60.27 47.31 1.26 1.21 0.81 0.00 1.27 0.45 17 Ix Intron 0 18.90 0.35 0.31 1.74 1.38 0.94 0.00 2.65 5.06 1.17 1.66 3.06 0.00 12.19 12.19 19.90 6.24 3.78 0.00 2.19 0.00 0.00 0.00 18 Ix_AR5 ActiveIntronRegion 0 14.96 0.00 0.49 0.64 2.68 0.00 0.00 1.73 6.18 1.15 3.87 6.35 0.00 9.53 10.06 18.43 3.30 2.22 0.00 3.97 0.00 0.00 0.00 19 Ix_AR4 ActiveIntronRegion 0 16.70 0.00 1.23 2.42 2.82 4.28 0.00 1.73 6.18 1.15 3.87 11.55 0.00 10.92 12.73 19.15 6.60 5.13 0.00 3.90 0.00 0.00 0.00 20 Ix_AR3 ActiveIntronRegion 0 25.21 0.00 1.23 2.73 4.62 5.50 0.00 1.73 5.17 0.10 1.93 14.56 0.00 13.73 15.83 23.24 9.00 5.54 0.00 4.26 0.00 0.00 0.00 21 Ix_AR2 ActiveIntronRegion 0 33.48 0.00 1.23 3.78 5.35 5.33 0.00 0.00 2.69 0.00 1.93 10.82 0.00 16.91 16.88 34.04 10.05 7.22 0.00 4.16 0.00 0.00 0.00 22 Ix_SR1 SilentIntronRegion 0 24.43 1.13 0.21 1.50 0.73 0.16 0.00 3.95 5.02 1.77 1.13 1.69 0.00 15.57 15.23 25.72 6.24 5.08 0.00 1.39 0.00 0.00 0.00 23 Ix_AR1 ActiveIntronRegion 0 15.31 0.00 0.00 2.18 0.00 0.00 0.00 3.09 6.07 1.04 1.04 0.00 0.00 11.68 10.08 15.08 8.03 2.96 0.00 1.14 0.00 0.00 0.00 24 Ix Intron 0 13.69 0.17 0.77 1.02 2.47 0.15 1.11 5.41 8.04 2.58 3.90 3.92 9.09 16.21 26.51 19.48 10.54 9.26 0.27 1.79 2.78 0.18 0.99 25 Ix_SR2 SilentIntronRegion 0 13.35 0.22 0.98 0.94 3.15 0.20 1.08 6.33 8.46 2.66 3.32 3.37 10.05 15.41 27.08 15.86 10.43 7.91 0.34 1.94 3.06 0.22 1.26 26 Ix_AR1 ActiveIntronRegion 0 29.63 0.00 0.00 4.09 0.00 0.00 2.65 3.77 8.53 5.11 7.73 12.99 8.10 26.72 27.96 51.34 3.30 19.82 0.00 2.13 0.00 0.00 0.00 27 Ix_SR1 SilentIntronRegion 0 13.80 0.00 0.00 1.09 0.00 0.00 1.12 1.91 6.40 2.08 5.93 5.37 5.41 18.74 24.50 31.58 11.85 13.94 0.00 1.18 1.92 0.00 0.00 28 Ix Intron 0 36.62 0.37 1.32 1.83 3.38 0.99 2.15 2.79 2.65 0.00 8.01 3.86 4.18 20.51 31.43 39.10 14.87 12.91 1.15 2.30 4.77 0.00 0.00 29 Ix_SR1 SilentIntronRegion 0 36.88 0.37 1.33 1.84 3.40 1.00 2.16 2.80 2.67 0.00 8.07 3.88 4.21 20.65 31.64 39.38 14.98 13.00 1.16 2.32 4.80 0.00 0.00 30 Ix Intron 0 19.49 0.00 0.00 0.00 1.90 0.00 1.88 0.00 0.00 0.00 1.37 2.53 5.47 2.71 4.35 16.84 4.68 0.00 0.00 0.00 0.00 0.00 0.00 31 Ix_SR1 SilentIntronRegion 0 20.88 0.00 0.00 0.00 2.04 0.00 2.02 0.00 0.00 0.00 1.41 2.71 5.74 2.86 4.68 17.92 5.03 0.00 0.00 0.00 0.00 0.00 0.00 32 Ix Intron 0 21.03 1.06 0.96 2.12 9.80 0.96 2.77 1.35 3.85 0.00 2.53 5.33 10.39 11.59 11.56 16.32 5.18 2.64 0.00 3.34 1.73 0.54 1.54 33 Ix_SR1 SilentIntronRegion 0 21.25 1.07 0.97 2.15 9.90 0.97 2.80 1.36 3.89 0.00 2.55 5.38 10.47 11.71 11.68 16.48 5.23 2.66 0.00 3.37 1.75 0.55 1.52 34 Ix Intron 0 26.87 0.91 1.22 2.26 7.15 0.00 1.18 2.87 4.51 1.90 5.17 6.52 3.50 18.77 25.12 21.18 9.56 17.58 2.84 4.74 0.49 0.93 0.65 35 Ix_AR1 ActiveIntronRegion 0 27.10 0.91 1.23 2.28 7.21 0.00 1.19 2.89 4.55 1.92 5.21 6.58 3.53 18.92 25.33 21.37 9.64 17.74 2.86 4.78 0.50 0.94 0.66 36 Ix Intron 0 16.32 0.00 0.00 0.00 0.00 0.00 0.79 0.00 1.09 0.00 4.59 0.00 0.00 4.76 10.22 3.53 1.96 1.63 0.00 0.00 0.00 0.00 0.00 37 Ix_SR1 SilentIntronRegion 0 16.71 0.00 0.00 0.00 0.00 0.00 0.80 0.00 1.12 0.00 4.69 0.00 0.00 4.85 10.47 3.61 2.00 1.67 0.00 0.00 0.00 0.00 0.00 38 Ix Intron 0 19.11 0.40 0.00 0.40 2.62 0.00 0.52 1.01 0.00 0.67 3.79 1.40 3.68 1.31 7.63 9.33 8.42 1.62 0.00 1.25 0.00 0.41 1.15 39 Ix_SR1 SilentIntronRegion 0 19.25 0.40 0.00 0.40 2.64 0.00 0.52 1.02 0.00 0.67 3.82 1.41 3.71 1.32 7.69 9.40 8.48 1.63 0.00 1.26 0.00 0.41 1.16 40 Ix Intron 0 34.28 0.00 0.99 7.12 6.50 1.48 2.14 8.34 27.32 5.07 18.78 2.89 6.10 49.11 44.62 59.35 32.97 16.36 9.45 15.50 6.54 0.56 6.34 41 Ix_AR1 ActiveIntronRegion 0 34.44 0.00 0.99 7.16 6.53 1.49 2.15 8.38 27.46 5.09 18.88 2.90 6.14 49.37 44.83 59.66 33.15 16.44 9.51 15.58 6.58 0.57 6.37 42 Ix Intron 1 123.31 36.72 175.72 83.54 48.31 75.10 36.23 101.64 66.80 118.34 126.64 40.28 29.29 211.13 181.10 173.15 121.04 164.09 91.31 67.72 130.02 78.73 91.27 43 Ix_AR1 ActiveIntronRegion 0 124.21 36.98 176.96 84.14 48.66 75.64 36.49 102.39 67.29 119.19 127.53 40.56 29.49 212.65 182.39 174.42 121.90 165.29 91.94 68.18 130.93 79.29 91.92 44 Ix Intron 0 3.51 0.37 27.57 5.98 0.49 0.00 0.73 9.96 0.68 7.55 2.85 0.00 0.00 7.62 7.54 0.55 1.22 16.90 5.86 3.92 1.22 2.31 5.41 45 Ix_SR1 SilentIntronRegion 0 3.52 0.38 27.67 6.00 0.49 0.00 0.73 9.99 0.68 7.58 2.86 0.00 0.00 7.64 7.57 0.55 1.22 16.96 5.89 3.93 1.22 2.32 5.43 46 Ix Intron 0 5.78 4.51 50.04 15.24 6.54 1.98 4.06 10.54 3.35 8.36 3.30 0.00 0.44 13.20 8.67 1.52 2.44 30.65 10.50 6.29 4.76 1.78 3.34 47 Ix_SR1 SilentIntronRegion 0 6.22 4.70 54.78 16.76 7.02 2.18 4.38 11.43 3.68 9.19 3.38 0.00 0.48 13.75 8.84 1.67 2.48 33.52 11.35 6.78 5.09 1.82 3.67 48 Ix Intron 0 18.62 10.22 39.77 32.54 10.93 19.20 6.24 12.41 18.31 21.30 18.62 4.48 6.05 22.49 38.05 25.52 11.41 37.22 21.35 10.47 17.77 12.44 13.53 49 Ix_AR1 ActiveIntronRegion 0 19.76 9.58 44.30 36.15 11.48 21.43 6.42 13.91 20.49 23.29 20.56 5.15 5.98 24.90 41.47 28.29 12.72 42.24 23.86 11.72 19.69 13.72 15.09 50 Ix_AR1 ActiveIntronRegion 0 6.78 3.02 18.79 13.34 1.98 7.49 1.74 11.54 5.75 13.35 12.50 2.53 1.90 12.51 20.50 15.99 9.70 13.43 7.85 6.45 19.42 5.75 9.97 51 I1_AR3 ActiveIntronRegion 0 1.14 1.34 2.39 12.82 4.18 8.79 1.90 4.65 13.05 7.68 3.29 1.89 0.00 4.48 4.62 1.14 7.83 10.28 4.89 10.49 10.62 7.06 6.48 52 I1_AR6 ActiveIntronRegion 0 41.28 10.92 7.42 11.71 21.68 17.25 9.11 16.13 12.08 30.37 56.07 26.17 23.18 73.40 76.65 74.98 80.83 23.93 43.92 11.87 39.81 21.62 46.14 53 I1_AR7 ActiveIntronRegion 0 3.97 9.53 4.29 9.11 15.72 21.66 4.22 13.29 9.73 25.73 56.42 24.62 9.67 84.05 111.15 107.93 114.71 35.68 42.21 4.52 57.16 15.50 46.25 54 I1_SR5 SilentIntronRegion 0 8.19 15.00 5.14 9.54 17.71 17.92 7.70 11.50 8.65 29.25 52.33 26.37 24.58 88.93 56.00 83.77 91.78 24.16 47.49 7.56 39.41 24.39 56.11 55 ER2a ExonRegion 0 0.00 0.00 1.23 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.45 2.84 5.44 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 56 Ix Intron 0 5.81 2.85 3.73 5.45 4.22 6.64 2.86 6.47 4.41 10.68 10.61 9.34 7.43 15.27 19.77 23.96 18.13 23.02 10.23 7.58 18.91 7.06 21.78 57 Ix_SR1 SilentIntronRegion 0 4.78 3.53 3.17 3.53 3.95 3.98 3.45 6.71 4.48 10.84 12.43 11.11 7.62 14.14 20.83 24.79 17.21 22.19 10.24 8.13 18.00 6.88 22.71 58 Ix_AR1 ActiveIntronRegion 0 7.96 1.53 5.15 9.52 4.99 12.62 1.71 6.23 4.44 11.15 7.09 6.17 7.51 18.81 18.42 23.41 21.38 25.85 10.79 6.99 22.29 7.81 21.40 59 Ix Intron 0 9.60 9.47 3.81 12.45 13.78 8.32 3.57 7.89 7.67 13.83 14.69 15.76 12.65 14.70 26.36 41.54 14.57 26.91 26.95 11.22 21.61 16.35 39.96 60 Ix_AR2 ActiveIntronRegion 0 2.38 1.86 0.00 0.00 4.35 1.76 0.06 0.00 0.00 1.15 3.06 3.61 0.59 3.25 5.92 11.89 7.15 1.85 0.00 0.62 6.70 1.91 14.32 61 Ix_SR1 SilentIntronRegion 0 5.13 5.12 0.00 0.00 5.87 0.99 1.27 0.00 0.00 1.15 4.27 2.58 7.58 6.00 22.82 26.58 16.12 1.85 3.12 1.80 14.20 7.29 30.83 62 Ix_AR1 ActiveIntronRegion 0 10.86 10.74 4.68 15.32 15.75 9.96 4.20 9.72 9.44 16.76 17.21 18.74 14.36 16.94 28.51 46.19 14.94 32.71 32.68 13.48 23.94 18.86 43.42 63 Ix Intron 0 4.12 1.79 2.16 3.66 2.43 2.34 1.35 5.30 4.26 6.85 5.89 2.48 2.23 7.61 14.18 14.33 10.59 13.29 8.08 4.42 14.60 4.76 13.69 64 Ix_AR2 ActiveIntronRegion 0 4.92 1.72 2.10 4.63 2.74 0.52 0.75 8.37 3.83 6.69 6.94 1.12 4.37 6.62 13.60 15.79 6.93 14.74 4.04 5.64 20.17 4.12 11.77 65 Ix_AR1 ActiveIntronRegion 0 2.12 0.00 2.63 3.37 2.68 1.51 0.70 1.63 4.94 3.78 2.96 0.00 0.00 8.50 15.70 23.34 10.29 8.31 7.87 3.07 16.59 0.00 11.49 66 Ix_SR1 SilentIntronRegion 0 4.05 1.82 2.16 3.55 2.39 2.59 1.44 4.96 4.31 6.91 5.80 2.69 1.99 7.73 14.24 14.03 11.07 13.18 8.62 4.28 13.86 4.90 13.97 67 Ix Intron 0 3.58 1.46 2.97 2.92 1.67 1.57 1.25 2.95 3.12 4.88 3.03 3.15 2.63 2.98 11.88 8.97 8.12 8.00 4.75 4.01 14.01 2.75 18.95 68 Ix_SR3 SilentIntronRegion 0 3.83 1.72 2.85 2.62 1.78 1.58 1.31 3.15 2.88 4.43 3.10 2.45 2.88 2.74 9.89 8.48 7.65 7.02 3.82 3.55 15.09 3.34 18.13 69 Ix_AR3 ActiveIntronRegion 0 6.65 3.52 5.58 5.97 1.17 2.98 2.12 8.28 6.57 7.23 6.06 7.06 2.43 5.06 11.60 13.26 8.92 6.39 6.53 4.68 17.00 3.69 18.68 70 Ix_SR2 SilentIntronRegion 0 3.35 1.35 3.48 3.22 1.82 1.48 1.03 3.14 3.25 5.57 2.91 3.45 2.67 3.21 13.13 9.56 8.47 8.81 5.49 4.22 14.32 2.76 19.70 71 Ix_AR2 ActiveIntronRegion 0 8.40 3.10 2.48 6.77 2.74 2.96 3.95 4.12 6.68 8.33 3.76 12.67 8.01 3.25 22.21 11.63 12.28 17.70 6.20 7.47 18.23 4.42 34.23 72 Ix_SR1 SilentIntronRegion 0 2.89 0.95 1.76 1.79 1.12 1.47 1.23 1.57 2.30 3.18 2.79 1.73 1.57 2.48 10.26 7.44 7.31 6.34 3.83 3.59 11.14 1.71 16.40 73 Ix Intron 0 18.04 6.93 22.68 16.82 7.43 6.34 6.26 15.43 13.90 13.24 8.47 1.34 1.55 9.61 13.74 10.86 9.00 19.14 17.07 14.62 10.84 14.62 12.30 74 Ix_AR1 ActiveIntronRegion 0 13.56 7.70 20.75 21.02 6.27 8.11 6.92 13.83 15.91 16.05 8.29 0.20 0.11 11.21 14.05 13.88 11.31 22.18 18.93 14.55 13.86 15.08 10.83 75 Ix_SR1 SilentIntronRegion 0 21.91 6.67 24.88 14.69 8.58 5.43 6.02 17.23 13.05 11.85 8.93 2.19 2.61 8.85 14.11 9.21 7.85 17.88 16.51 15.28 9.16 14.93 13.88 76 I2 Intron 0 8.41 7.30 33.25 7.76 13.29 10.22 12.37 26.50 17.71 13.62 2.07 0.93 2.18 1.53 4.97 4.69 2.43 17.42 22.55 19.56 7.07 3.71 4.64 77 I2_AR1 ActiveIntronRegion 0 10.40 5.78 43.04 12.39 6.49 3.98 8.94 25.10 21.51 15.46 5.40 1.17 4.84 0.45 8.01 6.53 2.69 25.31 24.14 17.06 10.27 6.00 6.14 78 I2_AR2 ActiveIntronRegion 0 7.51 6.64 30.10 6.38 2.52 0.00 3.72 25.96 14.91 10.30 2.84 0.00 4.69 1.47 9.85 2.47 2.93 9.27 11.42 14.37 7.86 12.19 5.93 79 I2_SR1 SilentIntronRegion 0 8.22 7.49 32.30 7.30 14.35 11.22 13.01 26.66 17.39 13.53 1.68 0.93 1.82 1.64 4.50 4.57 2.39 16.83 22.72 19.99 6.71 3.20 4.43 80 Ix Intron 0 86.94 20.27 45.25 35.91 36.71 43.74 24.90 45.11 27.48 51.76 88.84 37.49 37.14 102.33 106.30 77.24 75.49 76.38 59.24 39.75 70.36 74.73 65.78 81 Ix_AR1 ActiveIntronRegion 0 87.08 20.30 45.33 35.97 36.77 43.81 24.94 45.18 27.52 51.85 88.98 37.54 37.21 102.49 106.47 77.37 75.61 76.51 59.34 39.81 70.48 74.85 65.89 82 ER3a ExonRegion 0 14.90 16.23 4.29 6.41 9.88 8.97 15.63 5.52 2.84 3.55 3.76 7.18 12.51 9.52 19.55 17.53 11.29 5.17 11.97 13.70 7.68 4.61 12.99