Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	ZNF559	Gene	0	122.34	111.10	59.81	134.20	77.00	69.76	71.03	68.96	53.17	79.26	18.89	31.95	30.77	25.08	31.07	31.76	31.42	62.91	48.42	99.92	22.33	34.80	28.32
2	317221	Transcript	0	18.95	19.26	11.22	20.82	31.29	44.04	34.45	15.72	12.58	20.59	6.47	8.58	8.22	11.20	7.69	12.16	15.95	38.02	16.77	40.84	13.71	8.56	16.03
3	393883	Transcript	0	64.36	41.25	38.40	71.36	35.82	32.61	33.26	41.92	30.06	43.23	13.02	12.85	11.31	17.88	23.73	19.21	31.43	34.49	28.13	59.33	20.18	19.85	14.41
4	ER1a	ExonRegion	0	34.86	39.40	13.17	18.44	59.62	81.60	52.67	17.39	12.78	11.25	11.60	0.00	4.84	13.50	12.87	11.05	31.46	53.07	27.77	57.45	21.00	19.34	28.72
5	ER2a	ExonRegion	0	3.64	7.84	3.98	4.81	3.50	6.16	6.40	1.80	3.73	3.38	1.38	0.00	1.80	2.14	0.54	3.92	9.92	14.64	7.93	16.90	7.87	3.21	5.90
6	E2_Ab	KnownBoundary	0	6.08	25.26	16.14	12.85	8.57	2.56	10.91	9.57	8.36	13.19	0.00	0.00	0.00	2.47	0.00	3.25	13.93	19.77	9.41	41.35	5.31	0.00	0.00
7	ER2b	ExonRegion	0	56.77	58.85	26.02	44.70	52.92	63.02	71.60	31.25	32.42	32.03	13.71	8.51	8.88	20.02	11.98	34.97	43.46	131.52	53.36	88.51	52.94	22.72	50.27
8	E2_Da	NovelBoundary	0	0.00	0.00	9.40	6.93	0.00	0.00	7.86	8.67	1.68	6.90	0.00	0.00	5.68	2.47	0.00	0.00	8.51	7.46	14.12	38.54	0.00	0.00	3.50
9	E2a_E3a	KnownJunction	0	0.00	0.00	1.42	3.93	3.74	4.77	1.77	6.00	6.19	3.98	4.84	5.70	19.64	14.24	0.00	4.02	13.37	14.47	0.00	14.13	8.22	6.12	6.66
10	E2a_E4a	NovelJunction	0	6.59	8.42	0.00	3.10	4.33	0.00	2.25	2.14	4.63	6.85	2.37	0.00	0.00	2.47	0.00	4.02	0.00	24.17	3.86	18.02	3.15	2.94	4.35
11	I2	Intron	0	9.24	13.21	6.01	15.94	10.00	5.78	13.86	11.53	7.89	8.46	2.04	4.94	9.02	3.14	3.86	5.53	5.83	13.51	11.20	23.01	4.72	2.43	5.37
12	I2_SR1	SilentIntronRegion	0	10.89	14.04	7.77	19.94	11.78	5.24	15.05	16.10	10.84	10.73	2.42	5.65	11.15	3.26	4.73	6.54	6.58	16.03	14.31	24.37	5.96	2.11	5.77
13	I2_SR2	SilentIntronRegion	0	4.41	6.35	1.58	9.16	7.43	6.04	10.56	4.91	3.20	3.86	1.34	0.75	4.02	2.75	1.63	8.76	5.73	14.68	11.05	17.72	3.44	0.36	4.08
14	I2_SR3	SilentIntronRegion	0	5.34	10.63	4.28	8.05	5.30	7.27	17.41	4.18	4.64	6.78	2.09	6.56	5.57	3.56	3.60	2.68	8.92	14.74	9.76	19.17	3.97	1.50	5.82
15	I2_SR5	SilentIntronRegion	0	11.91	18.28	6.39	17.81	11.14	7.50	14.90	10.16	6.72	8.49	1.98	5.79	9.09	3.26	3.69	4.13	4.34	10.81	7.92	30.01	3.70	5.02	6.43
16	E3_Aa	NovelBoundary	0	16.00	36.64	19.37	61.23	20.71	13.23	17.89	27.40	23.90	40.45	2.68	0.00	0.00	12.54	0.00	3.25	13.46	44.02	30.21	51.07	12.05	12.00	7.94
17	ER3a	ExonRegion	0	22.51	22.18	15.17	28.88	19.83	21.48	15.68	21.35	21.74	34.61	9.42	15.26	15.63	21.84	14.51	25.95	37.31	48.95	36.35	62.24	30.36	11.41	21.07
18	E3_Da	KnownBoundary	0	44.08	36.64	23.48	37.92	7.89	12.38	32.11	32.90	21.35	40.70	0.00	19.21	0.00	22.07	4.45	22.81	4.21	54.39	13.55	55.67	26.63	3.12	18.10
19	E3a_E4a	KnownJunction	0	3.78	11.31	4.35	16.08	7.81	2.21	5.83	15.65	9.37	16.73	16.37	6.30	6.82	22.13	10.38	14.61	50.96	18.94	16.47	32.34	26.63	16.04	0.00
20	ER3b	ExonRegion	0	19.04	18.38	14.97	39.61	21.84	36.55	42.24	27.25	21.94	34.28	2.43	8.03	19.82	15.17	5.62	25.44	16.40	54.35	17.73	60.10	17.52	6.36	15.70
21	E3_Db	NovelBoundary	0	24.60	39.20	9.79	36.03	16.30	26.18	25.08	24.07	18.37	24.07	0.00	0.00	0.00	7.18	10.63	11.79	13.18	55.13	27.39	60.98	14.83	0.00	15.11
22	E3b_E4a	KnownJunction	0	2.96	0.00	5.50	4.40	12.39	13.97	8.44	2.51	3.01	16.25	5.37	17.71	0.00	4.94	4.57	0.00	0.00	6.63	4.80	4.99	2.59	0.00	3.67
23	I3	Intron	0	25.40	31.38	12.53	33.08	19.22	18.08	19.86	19.32	17.95	23.44	3.31	5.76	7.80	9.83	3.13	9.23	9.20	27.98	14.33	45.59	7.07	4.69	9.12
24	I3_AR1	ActiveIntronRegion	0	23.58	28.31	10.93	24.26	21.54	12.07	11.48	15.54	13.65	16.36	0.23	6.22	7.24	10.63	1.03	6.15	8.40	31.61	9.05	49.61	4.47	5.80	11.78
25	I3_SR1	SilentIntronRegion	0	23.95	28.47	8.51	37.23	21.83	24.42	26.41	26.93	21.71	33.26	1.93	9.34	6.42	9.23	0.00	16.11	9.56	44.35	16.93	57.33	9.97	2.08	7.42
26	I3_AR2	ActiveIntronRegion	0	26.15	32.58	13.27	35.56	18.53	19.55	22.01	20.10	19.07	25.06	4.28	5.47	8.08	9.67	3.91	9.80	9.46	26.23	15.78	44.07	7.70	4.54	8.51
27	E4_Aa	NovelBoundary	0	31.86	37.82	8.66	36.93	26.99	25.89	27.43	27.60	31.54	33.58	2.68	0.00	0.00	14.83	0.00	4.36	12.62	24.37	40.66	45.06	12.54	5.88	13.06
28	ER4a	ExonRegion	0	28.97	30.73	22.46	50.64	26.91	27.67	27.92	33.02	32.54	50.27	13.27	12.31	18.60	33.03	18.48	25.08	34.83	79.95	30.99	95.05	42.64	33.13	24.29
29	E4_Da	NovelBoundary	0	41.04	49.60	7.63	51.31	27.33	7.61	10.38	31.18	28.73	25.81	9.48	6.60	12.99	4.59	4.45	8.72	31.79	44.73	12.71	35.03	14.64	8.33	16.13
30	E4a_E5a	KnownJunction	0	22.97	16.90	11.74	37.49	44.99	16.58	24.02	37.46	28.04	59.77	9.79	25.21	27.27	28.31	32.14	35.46	18.42	109.81	47.72	77.15	42.38	36.56	31.07
31	I4	Intron	0	22.86	30.94	14.24	40.82	15.33	11.54	14.30	18.14	11.41	16.37	5.08	3.01	7.18	5.90	5.38	6.70	7.13	26.94	11.97	36.77	10.97	4.89	11.31
32	I4_AR1	ActiveIntronRegion	0	27.40	41.05	13.98	42.92	16.46	17.40	19.55	18.39	11.24	18.36	4.86	2.20	7.11	8.84	4.78	9.28	13.30	36.76	10.12	39.24	13.94	5.80	16.09
33	I4_AR2	ActiveIntronRegion	0	25.53	33.43	12.10	58.60	20.40	29.80	22.59	21.39	9.65	14.98	1.93	0.00	18.17	4.57	11.24	6.50	4.95	36.49	21.70	44.41	19.56	2.08	15.23
34	I4_AR3	ActiveIntronRegion	0	20.37	28.98	12.41	67.29	14.72	21.09	25.32	20.31	12.51	13.76	1.93	0.00	10.55	4.87	8.70	10.03	6.60	36.49	25.48	50.53	13.22	7.81	14.68
35	I4_SR1	SilentIntronRegion	0	25.82	30.30	14.09	67.05	13.38	13.94	30.45	16.59	14.45	11.58	4.06	0.00	6.57	6.82	7.25	11.89	6.60	31.41	22.30	42.77	13.22	8.54	12.92
36	I4_AR4	ActiveIntronRegion	0	20.61	26.13	14.61	37.70	14.67	7.53	10.66	17.95	11.53	15.78	5.49	3.74	6.61	4.58	5.27	5.27	4.32	21.47	11.80	34.87	9.03	4.45	8.72
37	E5_Aa	NovelBoundary	0	30.01	20.85	9.85	44.22	19.10	10.90	11.39	26.49	11.08	28.45	4.47	0.00	7.79	10.07	15.70	19.40	8.04	39.75	0.00	33.24	5.56	8.33	13.06
38	ER5a	ExonRegion	0	50.70	49.01	26.92	63.04	55.60	56.46	49.15	54.77	42.10	75.53	15.40	19.50	25.04	33.98	16.08	26.35	32.36	75.74	29.90	83.46	32.01	29.27	23.24
39	E5a_E6a	KnownJunction	0	94.39	103.34	18.48	68.86	23.68	96.42	88.68	48.10	47.97	79.59	28.38	18.16	20.45	19.54	15.20	38.37	34.41	48.50	13.18	70.50	22.55	20.02	32.95
40	I5	Intron	0	10.93	25.17	13.09	29.21	15.00	3.42	10.08	13.89	8.60	12.55	1.55	1.41	6.42	0.96	3.69	3.44	3.08	9.91	6.66	15.25	1.47	0.74	4.05
41	I5_AR1	ActiveIntronRegion	0	6.59	24.08	12.49	26.87	10.67	5.83	7.67	14.72	7.87	10.93	0.60	0.67	5.34	0.50	3.32	3.82	2.36	6.89	3.57	12.38	0.90	0.00	1.36
42	I5_SR1	SilentIntronRegion	0	8.07	24.92	9.85	20.30	8.81	0.56	8.59	12.38	6.35	12.03	1.39	3.31	4.55	0.41	0.84	1.03	5.28	8.81	3.94	11.76	2.62	0.00	3.20
43	I5_AR2	ActiveIntronRegion	0	15.00	26.42	13.14	37.07	19.54	3.73	11.23	15.21	11.66	16.15	1.87	1.48	9.60	1.46	4.51	2.87	3.19	9.98	9.58	18.96	0.95	1.12	4.73
44	I5_SR2	SilentIntronRegion	0	12.03	25.81	18.22	25.38	16.72	2.49	12.04	12.77	5.73	8.87	2.62	0.55	2.82	0.91	4.78	7.26	2.18	16.96	7.23	14.80	2.98	1.70	7.45
45	E6_Aa	NovelBoundary	1	3.78	47.62	21.82	46.01	19.52	2.84	19.30	6.90	9.14	12.33	0.00	0.00	32.79	2.06	0.00	3.59	0.00	9.74	0.00	23.20	3.09	0.00	3.33
46	ER6a	ExonRegion	0	76.32	94.75	17.88	67.42	37.46	46.22	48.59	50.46	31.00	71.47	24.71	33.12	37.58	29.70	16.60	27.57	35.55	51.00	14.47	66.93	21.53	39.79	26.47
47	E6_Da	NovelBoundary	0	23.34	49.60	24.42	39.82	32.09	8.52	36.39	35.49	15.36	37.82	4.32	11.85	6.82	12.42	5.19	7.60	17.95	17.00	12.89	42.89	6.18	16.78	23.82
48	E6a_E7a	KnownJunction	0	50.68	47.29	9.88	44.72	14.35	19.02	23.85	15.32	17.77	29.90	7.11	6.30	6.82	36.38	4.45	14.70	28.33	27.28	3.58	41.99	2.35	18.43	12.98
49	I6	Intron	0	31.96	74.67	25.98	67.55	28.90	21.19	39.90	26.14	25.06	35.55	6.38	12.01	25.49	7.69	9.16	11.59	9.92	26.82	16.89	44.59	4.19	11.51	12.06
50	I6_AR1	ActiveIntronRegion	0	32.09	74.96	26.08	67.80	29.01	21.27	40.06	26.24	25.15	35.69	6.40	12.06	25.58	7.72	9.20	11.64	9.95	26.93	16.94	44.76	4.21	11.55	12.11
51	E7_Aa	NovelBoundary	0	84.16	136.36	36.63	103.05	65.03	19.65	70.93	68.51	50.64	55.98	21.64	43.06	33.76	4.47	4.57	19.57	45.25	29.80	17.88	77.15	15.44	17.64	17.07
52	ER7a	ExonRegion	0	163.07	179.76	69.71	182.76	108.46	90.78	95.04	83.76	66.63	101.13	26.35	50.18	48.04	30.35	32.84	39.09	37.41	70.63	64.15	122.34	21.07	47.68	31.76
53	E7_Da	KnownBoundary	0	326.72	165.43	106.44	232.07	183.19	143.78	107.58	95.29	77.43	125.15	22.90	48.77	32.79	39.26	50.93	52.64	33.47	80.25	49.51	184.85	6.18	30.86	26.12
54	ER7b	ExonRegion	0	185.66	104.61	106.87	193.20	96.15	89.46	87.55	108.31	77.09	109.58	21.29	32.24	25.31	29.36	60.27	39.10	33.40	69.88	60.00	128.75	26.05	40.30	37.34
55	IG35	Intergenic	0	9.84	30.00	9.63	22.65	12.08	4.46	10.18	13.92	18.21	14.66	0.17	2.12	2.64	1.21	1.92	2.56	1.74	13.36	10.50	20.45	3.68	2.66	6.19
56	IG35_SR3	SilentIntergenicRegion	0	13.46	56.62	13.08	29.42	17.52	7.52	16.84	22.21	24.24	25.65	0.41	4.08	5.03	2.44	2.92	3.15	2.18	20.24	14.70	30.97	4.15	4.71	7.82
57	IG35_SR6	SilentIntergenicRegion	0	9.98	10.62	3.56	14.69	15.37	1.83	4.13	7.60	12.89	8.86	0.00	1.86	2.15	0.70	0.71	5.10	3.44	9.33	8.68	11.70	2.52	2.17	10.49
58	IG35_AR15	ActiveIntergenicRegion	0	9.48	21.26	11.41	23.22	6.98	1.31	3.34	10.68	19.42	6.39	0.00	0.00	2.38	0.55	3.62	1.39	2.19	14.76	7.24	11.85	6.24	2.76	10.75
59	IG35_SR7	SilentIntergenicRegion	0	9.96	13.87	10.29	23.63	10.87	2.72	6.55	10.46	17.76	9.20	0.00	0.57	1.28	0.31	1.44	1.63	0.92	8.48	9.29	15.35	2.11	1.18	4.22
60	IG35_AR16	ActiveIntergenicRegion	0	6.02	17.71	8.51	26.81	13.70	5.91	4.50	7.21	16.38	12.30	0.00	0.00	0.40	0.70	0.15	0.00	0.91	14.18	14.55	13.57	6.04	0.72	0.00
61	IG35_AR17	ActiveIntergenicRegion	0	9.02	18.40	4.91	18.35	7.53	2.49	6.58	10.00	13.70	9.90	0.36	2.01	0.00	0.51	0.38	2.23	0.62	13.41	11.06	14.60	8.47	0.78	3.85
62	IG35_SR8	SilentIntergenicRegion	0	5.82	17.24	6.08	16.62	7.64	2.89	7.88	8.15	14.93	8.57	0.00	1.32	1.63	0.68	1.75	2.84	2.08	8.91	6.69	14.26	3.53	1.81	5.87