Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KANK3 Gene 0 28.48 7.51 35.95 17.58 14.16 24.22 7.71 31.32 19.70 10.82 2.58 1.53 2.40 3.70 6.92 2.35 2.72 5.64 5.36 4.56 2.62 4.91 6.59 2 359768 Transcript 0 8.42 4.72 3.69 5.57 2.90 4.35 6.23 1.68 1.77 1.44 1.75 8.28 15.52 7.26 14.49 5.38 3.58 5.00 5.15 4.23 2.74 1.88 10.11 3 330915 Transcript 0 70.66 31.15 99.54 56.75 44.38 100.00 20.57 91.67 51.14 37.85 10.20 2.74 2.39 9.04 15.54 9.88 7.22 19.86 21.36 18.76 9.47 12.48 13.51 4 381056 Transcript 0 1.39 0.04 0.44 0.28 0.03 0.00 0.17 0.06 0.08 0.01 0.00 0.00 0.01 0.01 0.00 0.00 0.40 0.01 0.00 0.00 0.28 0.27 0.00 5 ER1a ExonRegion 0 3.12 0.00 2.00 0.00 0.00 8.64 1.85 1.00 2.67 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.70 5.49 6 E1_Da NovelBoundary 0 36.15 0.00 1.83 0.00 0.00 2.90 6.58 1.68 3.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 E1a_E2a KnownJunction 0 10.59 0.00 5.88 1.86 4.33 22.66 4.50 13.47 9.09 2.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 15.11 8 I1 Intron 0 13.83 0.45 5.27 4.45 5.67 1.34 3.24 3.67 3.56 0.25 0.00 0.00 0.00 0.00 0.22 0.11 0.00 0.00 0.58 0.00 0.32 0.76 1.61 9 I1_SR1 SilentIntronRegion 0 13.86 0.45 5.28 4.46 5.68 1.34 3.25 3.68 3.57 0.25 0.00 0.00 0.00 0.00 0.22 0.11 0.00 0.00 0.58 0.00 0.32 0.76 1.61 10 ER2a ExonRegion 0 6.79 0.00 7.39 0.00 6.39 10.17 3.18 3.18 5.58 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.81 13.55 11 E2a_E3a KnownJunction 0 0.00 0.00 6.30 0.00 0.00 5.34 0.00 1.89 1.36 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER3a ExonRegion 0 6.04 0.53 11.63 3.96 2.94 2.72 1.89 9.78 7.00 1.80 0.00 0.00 0.15 0.78 1.05 0.00 1.04 0.17 0.25 0.00 0.09 1.41 1.56 13 E3a_E4a KnownJunction 0 31.12 3.35 20.58 11.52 7.89 8.52 0.00 19.96 11.40 12.54 0.00 0.00 0.00 2.30 0.00 0.00 0.00 1.58 0.00 0.00 0.00 2.51 4.35 14 ER4a ExonRegion 0 26.60 0.41 27.89 15.70 6.61 3.65 7.40 23.77 14.31 8.09 0.00 0.00 3.94 5.16 5.95 0.00 1.68 3.60 0.00 0.00 0.57 5.69 3.61 15 E4_Da NovelBoundary 0 13.48 0.00 37.25 13.09 3.57 0.00 0.00 14.29 3.50 3.98 0.00 0.00 0.00 9.59 4.45 0.00 0.00 4.35 0.00 0.00 0.00 8.82 0.00 16 E4a_E5a KnownJunction 0 26.67 0.00 28.15 17.25 4.24 2.61 6.36 10.60 13.37 6.37 0.00 0.00 0.00 4.89 0.00 0.00 0.00 2.03 0.00 0.00 3.15 3.06 0.00 17 E5_Aa NovelBoundary 0 28.67 0.00 6.42 13.35 0.00 0.00 8.17 4.97 4.98 4.32 0.00 0.00 0.00 4.94 0.00 0.00 3.93 2.24 0.00 0.00 0.00 0.00 4.27 18 ER5a ExonRegion 0 16.55 2.09 19.76 10.90 1.51 0.71 4.45 8.20 11.27 5.50 0.00 0.00 0.00 4.25 1.56 0.00 0.59 0.85 0.00 0.00 1.41 3.26 0.90 19 E5_Ab KnownBoundary 0 21.11 3.16 29.66 4.99 0.00 0.00 2.12 18.36 6.22 5.24 0.00 0.00 0.00 4.59 6.18 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 20 ER5b ExonRegion 0 21.44 1.37 14.63 7.28 11.74 1.04 3.63 10.75 11.61 4.02 0.00 0.00 2.29 2.52 2.40 0.00 0.88 1.37 0.00 0.00 0.00 3.30 2.55 21 E5_Da KnownBoundary 0 12.59 0.00 1.83 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 E5a_E5c KnownJunction 0 58.83 0.00 32.17 12.72 20.20 0.00 6.76 31.22 18.95 2.34 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER5c ExonRegion 0 5.54 0.18 1.75 1.11 0.10 0.02 0.66 0.24 0.34 0.06 0.00 0.00 0.05 0.03 0.00 0.00 1.62 0.04 0.00 0.00 1.10 1.06 0.00 24 E5_Ac KnownBoundary 0 0.00 2.57 2.90 0.00 0.00 0.00 1.68 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER5d ExonRegion 0 35.12 1.20 20.02 7.93 10.18 3.72 3.95 16.94 14.32 5.28 1.25 0.00 0.07 1.30 4.09 1.05 0.00 0.36 0.00 0.00 0.00 1.88 0.00 26 E5c_E6a KnownJunction 0 38.67 0.00 18.89 16.95 12.48 0.00 0.00 20.99 11.83 7.15 2.53 0.00 0.00 0.00 6.18 3.76 0.00 2.32 0.00 0.00 0.00 5.33 0.00 27 ER5e ExonRegion 0 28.78 0.00 17.40 9.54 12.31 1.83 1.32 6.91 7.66 6.19 3.87 0.00 0.00 0.00 8.70 2.97 0.00 1.85 0.00 0.00 0.00 5.42 0.00 28 ER5f ExonRegion 0 32.28 0.00 19.76 9.54 8.03 1.83 0.66 7.78 7.72 5.73 2.90 0.00 0.00 0.00 8.34 2.97 0.00 1.85 0.00 0.00 0.00 5.99 0.00 29 ER6a ExonRegion 0 66.67 0.00 42.88 15.76 17.26 3.72 5.44 30.47 17.54 6.96 1.67 0.84 2.01 3.08 3.32 0.18 0.78 2.38 0.00 0.00 0.00 3.54 1.38 30 E6a_E8a KnownJunction 0 93.72 0.00 75.99 23.47 14.94 5.79 8.35 49.00 26.56 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.39 0.00 31 E6b_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER6b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 ER8a ExonRegion 0 57.20 0.71 66.03 33.62 15.89 7.98 11.22 40.48 24.80 6.35 0.68 0.65 0.00 0.49 5.11 0.00 1.15 2.90 1.11 0.00 2.31 3.00 10.26 35 E8a_E9a KnownJunction 0 65.64 3.09 80.75 43.98 34.04 5.17 9.41 48.55 28.76 8.84 0.00 6.30 0.00 0.00 4.45 0.00 0.00 4.06 0.00 0.00 0.00 8.57 0.00 36 ER9a ExonRegion 0 65.53 0.13 56.78 42.37 17.61 6.30 7.32 45.72 30.41 8.49 0.00 0.43 0.00 0.96 7.81 0.75 1.68 3.82 0.81 1.08 1.68 5.33 9.72 37 E9_Da NovelBoundary 0 6.67 0.00 6.00 0.00 0.00 4.66 1.85 1.68 0.00 1.26 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 3.03 0.00 11.87 38 E9a_E10a KnownJunction 0 100.31 2.89 24.66 23.37 8.15 13.69 4.50 44.40 33.28 7.84 0.00 0.00 0.00 4.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.00 0.00 39 ER10a ExonRegion 0 81.39 5.01 58.46 42.69 12.11 9.39 12.13 45.03 28.61 8.65 0.08 1.84 0.00 1.44 9.70 0.48 0.00 4.63 0.32 0.11 2.36 11.81 7.45 40 E10a_E11a KnownJunction 0 0.00 0.00 2.25 3.80 0.00 2.16 0.00 1.56 2.20 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 2.35 0.00 0.00 41 E10a_E12a KnownJunction 0 73.42 2.70 48.49 45.05 16.47 9.20 5.65 30.27 13.86 6.21 0.00 0.00 0.00 0.00 0.00 3.76 0.00 0.00 0.00 0.00 0.00 3.06 0.00 42 I10 Intron 0 13.06 2.30 6.76 3.97 4.40 1.51 4.08 1.06 2.27 0.70 0.99 1.47 0.00 0.53 3.61 0.31 1.70 1.89 1.97 2.41 2.49 0.64 10.87 43 I10_SR1 SilentIntronRegion 0 13.08 2.30 6.77 3.98 4.41 1.51 4.09 1.06 2.28 0.70 1.00 1.47 0.00 0.53 3.62 0.31 1.70 1.89 1.97 2.41 2.50 0.64 10.89 44 E11_Aa NovelBoundary 0 116.76 129.91 49.05 50.24 129.54 93.98 155.76 50.52 75.00 49.67 33.69 44.71 74.35 37.79 30.16 76.90 123.33 51.15 56.75 111.60 55.66 44.52 125.48 45 ER11a ExonRegion 0 16.84 9.43 5.14 7.35 5.81 6.54 12.47 1.80 1.33 1.85 3.50 16.55 31.03 14.52 28.97 10.75 7.16 6.84 10.30 8.47 3.13 3.77 20.22 46 E11_Da NovelBoundary 0 19.04 2.70 6.30 8.76 7.64 0.00 10.11 2.14 4.46 0.00 2.26 0.00 6.82 0.00 4.45 0.00 4.77 10.36 4.80 6.33 0.00 0.00 8.71 47 I11 Intron 0 15.93 25.50 35.12 14.43 39.15 61.33 12.18 33.38 18.47 22.15 8.08 1.49 0.00 11.94 10.77 9.94 5.52 9.62 17.31 22.24 9.21 6.10 12.28 48 I11_AR1 ActiveIntronRegion 0 16.06 25.70 35.40 14.54 39.47 61.83 12.28 33.64 18.62 22.32 8.15 1.50 0.00 12.04 10.86 10.02 5.57 9.70 17.45 22.42 9.29 6.15 12.38 49 E12_Aa NovelBoundary 0 28.60 52.10 161.64 101.29 104.92 271.09 50.17 122.44 97.39 89.50 12.69 5.55 0.00 9.54 17.80 3.76 18.14 16.25 13.74 23.07 11.55 3.12 25.78 50 ER12a ExonRegion 0 67.89 59.59 150.59 68.45 72.30 190.81 35.49 153.07 88.42 69.50 20.39 5.48 4.79 18.08 31.08 16.00 14.44 39.72 42.73 37.53 18.95 21.89 27.03 51 IG3 Intergenic 0 8.21 24.80 41.50 18.01 4.45 54.89 19.82 22.85 19.39 19.90 6.43 3.95 2.14 15.52 13.15 14.83 9.15 4.60 31.78 15.33 9.75 11.55 19.54 52 IG3_AR1 ActiveIntergenicRegion 0 8.37 25.28 42.40 18.38 4.55 56.07 20.24 23.31 19.79 20.33 6.57 4.04 2.19 15.86 13.44 15.16 9.35 4.70 32.46 15.65 9.94 11.81 19.97