Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF266 Gene 0 64.01 51.11 27.31 27.98 63.38 67.56 44.50 57.68 37.72 35.31 75.25 32.37 37.12 50.12 39.25 65.35 51.13 49.52 35.13 55.35 25.45 32.67 26.38 2 393865 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 2.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 361451 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 361151 Transcript 0 0.00 12.63 10.50 2.06 15.28 153.72 37.58 13.27 13.92 11.55 34.80 0.00 0.00 2.47 18.54 12.30 17.11 43.11 8.94 20.96 13.90 8.33 0.00 5 437513 Transcript 1 7.06 6.78 6.13 4.09 10.70 40.34 16.33 16.71 11.94 12.62 42.52 4.33 21.89 22.74 12.57 22.79 24.21 22.17 11.68 17.73 8.81 11.11 4.89 6 IG37_SR2 SilentIntergenicRegion 0 1.00 40.46 3.17 0.96 2.96 0.00 6.27 0.81 0.00 3.24 0.00 0.00 0.00 0.00 0.65 0.00 0.00 9.87 0.50 1.01 0.00 0.00 0.00 7 ER1a ExonRegion 1 17.59 18.74 15.89 10.49 32.71 90.37 32.22 38.43 36.47 30.97 68.47 7.16 24.08 34.66 29.17 121.37 55.49 83.38 48.39 62.12 44.44 28.64 43.37 8 E1a_E2a KnownJunction 1 10.89 27.36 29.09 29.93 28.35 27.20 6.32 122.28 70.37 55.04 57.38 0.00 26.62 63.69 97.78 204.99 34.03 322.22 64.75 115.88 35.77 48.68 77.85 9 E2_Aa NovelBoundary 0 0.00 0.00 1.69 0.00 0.00 0.00 27.69 2.51 0.00 1.67 2.05 0.00 0.00 0.00 0.00 0.00 4.77 2.57 3.76 0.00 3.15 0.00 0.00 10 ER2a ExonRegion 1 7.75 15.04 17.63 21.03 59.77 129.73 36.75 44.78 33.79 34.18 52.97 24.42 98.16 49.80 28.91 278.03 36.00 159.27 100.49 71.89 33.49 42.28 88.20 11 E2a_E3a KnownJunction 0 0.00 2.83 3.55 1.56 0.00 0.00 8.74 2.55 0.00 0.00 0.00 0.00 0.00 2.35 6.30 0.00 0.00 8.12 0.00 5.69 0.00 2.51 0.00 12 E2a_E5b KnownJunction 0 0.00 12.63 10.50 2.06 15.28 153.72 37.58 13.27 13.92 11.55 34.80 0.00 0.00 2.47 18.54 12.30 17.11 43.11 8.94 20.96 13.90 8.33 0.00 13 I2_SR2 SilentIntronRegion 0 6.36 2.50 4.60 6.01 8.19 2.60 10.03 8.31 3.87 4.47 4.50 8.31 16.74 0.71 2.19 1.82 2.23 1.67 2.64 14.56 0.00 2.59 2.96 14 E3_Aa NovelBoundary 0 10.59 2.50 8.49 17.58 0.00 2.56 14.84 14.58 7.81 5.86 2.68 11.40 12.99 2.30 0.00 0.00 13.93 5.22 18.64 14.38 0.00 11.76 0.00 15 ER3a ExonRegion 0 22.77 28.44 25.33 16.44 37.19 28.48 30.40 50.29 33.06 28.37 87.45 40.42 53.02 61.73 45.52 49.12 75.33 55.09 32.03 66.26 23.38 32.03 23.24 16 E3_Da NovelBoundary 0 17.11 6.25 14.55 17.95 0.00 4.54 12.10 15.36 15.71 8.43 11.79 18.01 33.93 9.36 20.03 15.98 4.39 15.67 8.56 23.91 2.78 9.00 12.04 17 E3a_E4a KnownJunction 0 7.19 15.33 19.46 11.72 12.65 21.01 11.92 42.06 27.52 16.82 64.65 30.91 37.50 22.43 31.77 49.13 31.98 44.60 14.49 24.42 20.14 9.25 15.96 18 E3a_E5b NovelJunction 0 3.26 0.00 3.76 1.63 0.00 5.05 6.76 7.02 2.84 1.21 9.32 6.30 6.66 2.12 8.90 0.00 4.77 5.55 0.00 11.19 5.62 5.88 8.02 19 ER4a ExonRegion 0 33.53 27.91 22.90 16.78 44.05 38.17 46.83 43.73 29.36 20.32 102.04 62.69 81.66 65.22 94.69 92.89 87.24 61.02 56.77 70.46 32.54 42.72 44.07 20 E4_Da NovelBoundary 1 64.97 21.05 8.49 16.78 11.46 2.90 20.71 19.02 10.36 4.27 9.11 0.00 55.52 4.65 8.90 0.00 18.05 20.10 0.00 34.00 9.27 5.45 4.35 21 E4a_E5b KnownJunction 0 17.11 16.58 11.47 6.46 24.11 7.33 26.32 28.55 21.01 16.12 88.34 12.00 40.74 60.98 13.35 56.05 71.15 28.85 12.99 18.15 9.08 17.76 15.28 22 I4 Intron 0 7.30 9.71 7.48 10.89 12.48 5.16 15.98 12.02 9.78 10.24 8.71 8.58 18.17 6.12 8.79 15.13 14.46 22.34 13.15 28.36 6.06 5.90 9.10 23 I4_SR1 SilentIntronRegion 0 7.30 9.76 7.52 10.91 12.47 5.19 16.04 12.07 9.83 10.27 8.71 8.58 18.23 6.15 8.82 15.18 14.53 22.44 13.22 28.47 6.09 5.88 9.10 24 E5_Aa NovelBoundary 0 16.37 2.76 8.66 25.20 17.74 4.26 19.08 26.49 17.82 12.79 16.06 0.00 0.00 2.35 5.93 10.68 12.16 28.89 16.85 31.45 0.00 14.14 6.57 25 E5_Ab NovelBoundary 0 14.60 8.81 8.34 21.34 12.99 2.90 16.61 23.08 14.50 8.70 7.48 0.00 12.66 4.94 0.00 10.85 3.55 26.57 21.55 28.63 8.46 9.00 7.00 26 I4_AR1 ActiveIntronRegion 0 7.64 2.71 1.09 7.19 15.76 0.00 6.03 3.65 1.17 6.31 9.88 8.90 8.86 1.71 5.64 8.26 3.48 5.24 2.12 12.17 2.08 9.72 10.60 27 ER5a ExonRegion 1 7.06 6.78 6.13 4.09 10.70 40.34 16.33 16.71 11.94 12.62 42.52 4.33 21.89 22.74 12.57 22.79 24.21 22.17 11.68 17.73 8.81 11.11 4.89 28 ER5b ExonRegion 0 56.34 79.48 37.95 39.97 81.60 95.53 55.25 104.39 83.86 78.37 162.22 52.49 58.64 121.64 53.85 114.28 128.80 101.28 55.17 109.08 54.83 63.57 48.94 29 E5_Da NovelBoundary 0 16.74 20.72 42.49 24.07 28.18 2.33 20.62 42.35 25.46 17.03 7.42 0.00 0.00 7.71 5.69 7.95 18.70 62.80 8.47 47.23 21.19 9.12 25.18 30 E5a_E6a KnownJunction 0 53.19 91.23 26.11 49.88 71.56 105.05 54.28 105.85 76.88 75.37 134.93 29.26 45.45 92.88 38.57 108.77 90.14 101.56 33.98 83.35 31.94 30.98 61.12 31 I5 Intron 0 9.84 19.14 6.79 11.80 5.91 6.82 9.69 14.06 5.56 5.36 3.37 2.16 3.78 4.97 4.72 4.83 6.52 11.31 7.03 22.99 6.40 7.02 4.44 32 I5_SR1 SilentIntronRegion 0 11.61 22.32 7.83 13.76 6.96 7.97 11.42 16.08 6.36 6.14 3.97 2.49 4.46 5.71 5.05 5.66 7.60 12.63 7.71 26.93 7.51 8.27 5.04 33 E6_Aa NovelBoundary 0 61.79 35.52 11.24 30.97 14.35 14.99 14.75 27.03 20.86 8.25 11.32 17.86 0.00 16.78 4.45 27.69 17.02 36.64 22.87 50.05 12.17 5.63 20.40 34 ER6a ExonRegion 0 78.39 79.31 41.17 42.75 99.68 111.46 71.80 115.86 80.40 44.67 151.13 63.67 71.50 111.29 58.28 94.19 84.68 66.81 65.61 101.69 46.89 76.12 47.01 35 E6_Da NovelBoundary 0 96.61 95.25 22.23 43.55 98.73 97.22 63.59 119.57 124.62 36.32 88.44 69.92 69.80 71.22 104.09 84.59 54.89 76.65 29.18 111.34 54.98 62.83 12.89 36 E6a_E7a KnownJunction 0 0.00 2.70 12.15 0.00 7.39 5.45 7.64 17.70 9.90 0.00 38.59 18.46 27.11 21.60 32.26 8.29 25.90 6.55 9.22 9.27 5.50 26.27 11.61 37 E6a_E8a NovelJunction 0 0.00 12.50 5.26 0.00 11.46 0.00 9.72 27.11 4.95 0.00 22.69 6.30 0.00 15.30 11.87 15.55 11.78 1.87 4.61 21.60 2.35 5.63 0.00 38 I6 Intron 0 66.85 58.88 15.02 23.39 80.12 96.54 48.35 84.75 50.87 28.13 92.85 67.79 64.18 71.29 46.72 44.98 61.91 33.58 42.99 72.11 21.03 43.87 25.12 39 I6_AR1 ActiveIntronRegion 0 67.67 59.65 15.22 23.69 81.15 97.78 48.98 85.84 51.54 28.48 94.06 68.65 65.02 72.18 47.33 45.51 62.70 34.01 43.55 73.02 21.30 44.43 25.45 40 E7_Aa NovelBoundary 0 90.09 80.31 25.22 44.55 101.19 138.22 88.90 136.49 96.50 43.33 109.29 78.63 119.96 68.28 48.58 69.55 60.78 81.62 17.51 134.80 31.32 44.27 24.84 41 ER7a ExonRegion 0 62.66 60.42 29.68 31.03 68.91 83.96 44.29 83.73 53.23 31.15 130.51 63.81 56.53 86.13 71.08 64.59 84.47 55.86 49.85 85.33 40.46 62.89 34.41 42 E7_Da NovelBoundary 0 111.20 81.76 38.20 57.87 69.44 99.83 72.56 135.38 72.77 40.56 85.18 69.92 47.40 66.28 45.00 46.06 51.33 83.16 48.47 101.76 53.81 45.86 19.38 43 E7a_E8a KnownJunction 0 7.85 18.94 23.62 8.99 15.87 10.39 2.25 30.97 18.89 5.37 45.27 13.80 15.75 19.19 35.23 17.35 14.40 22.14 19.58 27.61 3.09 27.19 12.72 44 I7 Intron 0 63.12 41.49 20.77 23.11 44.09 52.52 26.49 60.63 28.88 14.08 40.95 18.18 27.92 37.70 39.84 59.47 33.67 46.48 27.49 54.26 28.53 28.61 14.98 45 I7_AR1 ActiveIntronRegion 0 64.11 42.10 21.09 23.46 44.78 53.34 26.90 61.52 29.31 14.27 41.57 18.47 28.29 38.26 40.46 60.39 34.20 47.20 27.92 55.07 28.96 29.01 15.21 46 E8_Aa NovelBoundary 0 193.81 97.29 29.95 39.16 88.20 98.98 79.40 107.78 64.81 47.68 92.81 37.21 26.46 67.10 45.00 66.14 75.18 91.57 52.33 93.77 52.33 37.54 36.96 47 ER8a ExonRegion 0 133.14 136.94 71.29 78.81 186.99 159.01 112.15 152.62 88.73 75.25 198.28 74.08 83.57 116.40 89.28 130.09 129.33 103.49 86.48 143.09 61.86 73.09 53.53 48 E8_Da NovelBoundary 0 3.48 5.79 8.54 3.40 11.38 0.00 7.99 2.55 2.49 5.64 0.00 0.00 0.00 0.00 0.00 0.00 4.77 17.04 0.00 9.78 0.00 0.00 0.00 49 E8a_E9a KnownJunction 0 173.73 197.07 80.42 91.86 204.84 209.82 98.92 157.19 72.83 78.89 184.31 88.98 92.85 131.91 93.08 128.26 118.09 137.58 50.92 142.79 81.24 61.97 51.90 50 ER9a ExonRegion 0 174.83 166.50 79.00 99.79 204.81 193.59 118.76 177.80 96.84 86.67 193.48 77.88 91.25 146.01 95.17 181.52 125.68 159.13 94.07 159.94 80.59 78.22 77.51 51 E9_Da NovelBoundary 0 10.74 5.85 10.29 17.31 0.00 0.00 8.21 2.38 4.05 3.95 0.00 0.00 0.00 0.00 0.00 3.76 0.00 15.21 8.85 6.14 6.30 2.88 3.16 52 E9a_E10a KnownJunction 0 249.82 190.62 96.57 119.57 233.53 130.78 158.50 189.43 132.26 100.22 256.70 62.12 79.38 145.62 71.82 190.12 148.20 123.66 106.54 195.20 58.87 74.09 89.89 53 E9a_E11a NovelJunction 0 7.04 6.51 10.17 4.46 3.90 32.25 14.49 19.67 0.00 10.29 2.16 0.00 6.82 12.24 16.94 11.11 9.35 4.06 4.80 12.08 9.27 2.51 8.02 54 ER10a ExonRegion 0 202.95 163.28 81.25 95.34 196.02 148.17 134.26 162.47 106.80 108.48 186.67 81.58 94.06 137.63 117.35 136.45 126.70 102.71 81.39 140.21 64.35 86.50 55.63 55 E10a_E11a KnownJunction 0 187.37 172.14 67.74 94.73 182.00 152.87 116.63 176.74 85.62 101.62 64.28 81.03 79.22 84.94 87.52 71.69 93.13 86.18 59.95 168.10 36.94 40.66 60.86 56 ER11a ExonRegion 0 112.28 71.87 36.61 37.46 83.93 81.10 59.23 64.55 38.61 47.05 71.44 36.79 33.75 44.46 43.02 56.36 45.37 43.28 30.12 51.10 19.78 30.23 21.03 57 E11_Da KnownBoundary 0 10.37 6.25 5.77 3.50 16.30 2.38 1.85 0.00 1.65 0.99 15.27 0.00 13.80 0.00 0.00 0.00 0.00 1.78 9.22 3.13 3.03 3.00 0.00 58 E11a_E11b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 2.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 E11_Ab KnownBoundary 0 7.19 5.59 6.09 5.53 14.86 5.22 0.00 11.21 6.45 2.66 0.00 6.45 0.00 0.00 0.00 3.25 4.02 2.45 3.86 0.00 2.97 2.69 0.00 60 ER11b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 ER11c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62 E11_Db KnownBoundary 0 38.15 22.63 3.52 11.45 32.85 5.22 6.23 11.87 2.98 4.30 22.48 7.65 0.00 0.00 0.00 0.00 4.77 4.64 9.51 11.95 0.00 0.00 8.54 63 ER11d ExonRegion 0 0.00 0.00 0.00 0.00 0.15 0.22 0.22 0.00 0.14 0.00 0.11 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00