Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 THOP1 Gene 0 36.37 44.19 229.10 67.04 26.46 58.78 37.81 84.73 75.71 122.18 234.76 59.98 37.26 304.33 361.50 245.06 242.06 204.94 131.98 106.79 115.30 70.81 65.25 2 395212 Transcript 0 2.25 0.79 9.79 6.36 0.31 2.15 3.22 1.76 4.03 10.55 6.70 1.05 0.73 8.85 6.70 9.45 4.24 11.95 5.47 11.38 3.88 2.22 1.73 3 307741 Transcript 1 119.28 63.54 346.00 127.96 44.31 72.52 45.44 159.29 86.54 133.77 345.67 44.86 67.37 335.98 575.07 370.84 248.71 240.43 141.09 132.95 120.22 75.07 85.28 4 ER1a ExonRegion 0 6.60 5.43 29.45 2.34 4.21 13.46 4.12 7.33 6.46 15.10 41.02 20.79 15.58 35.55 77.33 28.21 42.20 15.00 29.39 16.05 27.95 12.51 13.48 5 E1a_E2a KnownJunction 0 7.33 6.25 136.90 29.73 3.82 19.08 6.49 54.79 46.50 71.75 179.15 62.12 34.41 103.24 209.16 75.45 148.76 65.54 91.39 37.07 120.71 28.66 40.55 6 I1 Intron 0 5.66 2.92 7.26 3.26 3.84 2.33 6.72 3.44 3.14 7.71 6.58 17.26 10.52 12.83 21.67 20.25 17.53 14.48 10.11 14.28 4.26 2.23 5.39 7 I1_SR2 SilentIntronRegion 0 7.44 3.38 9.23 4.37 4.71 2.98 8.50 4.53 3.79 10.20 7.75 22.79 12.74 15.16 23.01 25.26 20.96 17.31 12.76 16.75 5.70 2.95 7.03 8 ER2a ExonRegion 0 19.70 23.03 240.79 45.60 22.50 55.88 32.25 90.48 90.04 138.41 314.30 75.41 52.16 320.97 442.27 285.02 332.49 250.84 213.79 130.24 145.69 86.80 75.95 9 E2a_E3a KnownJunction 0 44.45 45.26 378.90 105.51 97.37 340.37 159.60 131.48 131.80 221.48 515.24 127.24 130.35 513.16 685.83 363.92 498.18 255.52 343.63 190.79 202.20 188.72 112.34 10 E3_Aa NovelBoundary 0 17.78 0.00 10.11 3.33 3.57 0.00 11.75 2.34 6.48 4.86 2.68 0.00 0.00 7.06 21.51 16.32 4.77 26.49 21.84 9.20 0.00 0.00 8.02 11 ER3a ExonRegion 0 52.15 71.91 333.17 91.24 43.71 125.35 83.83 125.11 117.63 196.41 399.77 135.03 105.98 536.79 571.82 365.83 431.95 274.06 274.09 165.99 221.10 135.08 107.45 12 E3a_E4a KnownJunction 0 49.49 68.08 383.31 110.81 41.94 39.58 46.19 110.32 113.66 200.69 408.31 162.35 64.28 466.48 570.74 409.64 505.84 301.82 263.63 162.41 223.82 121.79 79.90 13 ER4a ExonRegion 0 54.42 47.26 390.51 119.42 23.91 70.01 39.46 152.23 117.15 210.53 372.37 177.15 108.13 594.35 600.61 515.99 457.02 375.23 331.16 164.34 233.33 195.25 124.67 14 E4a_E5a KnownJunction 0 100.24 67.42 591.88 176.70 30.65 97.61 78.30 214.24 138.22 296.13 538.29 135.04 93.18 748.66 628.22 590.02 561.76 426.64 468.15 218.66 200.04 267.53 145.71 15 ER5a ExonRegion 0 39.62 62.82 379.27 109.27 66.58 103.57 87.05 124.05 110.93 204.32 512.88 134.63 117.43 533.50 516.37 449.28 506.86 341.85 265.78 158.02 230.96 133.04 110.39 16 E5_Da NovelBoundary 0 3.19 2.70 17.36 6.63 0.00 40.37 3.71 13.43 15.60 15.42 17.95 11.25 6.82 60.39 44.75 22.39 21.51 35.86 17.51 28.25 2.72 5.63 4.35 17 E5a_E6a KnownJunction 0 17.11 49.93 289.43 59.80 73.34 91.31 72.43 50.89 82.26 123.91 271.65 129.94 78.89 385.72 454.66 265.83 286.96 247.19 81.79 99.20 171.31 80.64 81.44 18 I5 Intron 0 7.92 6.06 10.67 5.05 7.37 14.05 5.28 18.40 18.80 18.07 24.33 10.18 8.28 38.36 27.48 30.22 31.87 32.67 19.12 19.21 8.39 6.81 9.21 19 I5_SR1 SilentIntronRegion 0 8.52 6.14 10.27 4.45 7.30 14.22 5.47 18.65 19.25 17.63 25.90 11.74 9.39 40.25 30.03 31.48 33.03 32.97 20.08 20.27 7.87 7.31 9.12 20 I5_AR2 ActiveIntronRegion 0 5.12 8.56 12.25 5.81 15.63 11.29 3.48 9.64 22.30 12.92 18.82 0.00 4.69 38.38 15.73 27.69 31.79 33.94 5.03 17.58 4.29 6.58 5.10 21 I5_AR3 ActiveIntronRegion 0 7.02 6.29 12.76 6.38 18.37 5.67 4.57 4.01 20.88 20.12 25.39 0.00 2.13 37.35 20.70 26.34 23.71 33.76 6.52 15.57 6.31 8.62 2.94 22 I5_SR2 SilentIntronRegion 0 5.27 5.64 12.82 8.19 6.69 14.31 4.60 19.25 16.63 21.08 17.05 3.61 3.32 29.50 15.98 24.90 27.31 31.69 16.40 14.58 11.76 4.34 10.59 23 E6_Aa NovelBoundary 0 3.19 13.29 21.67 6.03 0.00 19.02 10.64 37.79 29.80 18.51 19.37 6.30 13.64 39.08 15.70 62.38 16.46 60.27 17.79 8.95 14.09 7.90 12.55 24 ER6a ExonRegion 0 37.98 71.55 389.76 115.15 46.97 100.51 66.18 139.60 125.52 200.03 416.10 169.12 97.12 512.57 542.88 538.12 411.57 427.82 300.00 148.86 180.14 154.56 148.89 25 E6_Da NovelBoundary 0 0.00 3.09 31.90 15.32 3.40 10.90 4.02 24.15 20.54 48.94 14.11 0.00 0.00 33.73 0.00 4.36 33.75 81.46 17.51 26.33 8.65 0.00 11.61 26 E6a_E7a KnownJunction 0 20.60 47.43 243.63 51.28 25.21 41.96 29.46 67.03 86.46 99.23 223.43 75.02 45.29 261.76 279.50 208.41 290.60 180.49 70.59 101.69 85.56 64.97 55.91 27 I6 Intron 0 4.96 8.62 32.09 22.19 7.19 15.23 5.43 17.13 22.45 43.35 17.98 3.20 5.10 27.79 20.96 21.41 19.90 65.99 34.03 23.53 7.90 7.68 10.02 28 I6_SR1 SilentIntronRegion 0 4.83 6.35 16.96 15.44 2.03 13.32 4.25 14.35 16.94 38.24 17.13 1.55 6.22 26.85 21.24 20.57 20.35 72.44 34.96 19.76 6.33 5.10 8.68 29 I6_AR1 ActiveIntronRegion 0 5.06 10.21 42.62 26.90 10.77 16.59 6.26 19.09 26.31 46.97 18.61 4.35 4.33 28.49 20.81 22.03 19.64 61.69 33.46 26.20 9.00 9.48 10.97 30 E7_Aa NovelBoundary 0 6.08 15.66 51.39 41.02 4.33 7.89 4.42 30.81 26.42 52.46 2.37 0.00 5.84 28.84 20.40 19.23 12.53 40.42 20.24 31.70 3.15 0.00 19.97 31 ER7a ExonRegion 0 51.76 85.74 310.56 88.57 48.46 95.28 54.26 93.64 109.98 149.75 259.92 94.36 54.63 401.72 427.49 328.68 310.21 350.42 178.05 137.61 128.67 88.37 91.40 32 E7a_E8a KnownJunction 0 55.12 64.66 235.12 67.69 30.39 54.97 72.69 93.16 82.09 135.55 239.32 56.87 33.93 356.11 307.07 249.51 325.20 244.53 91.39 163.37 90.01 65.40 79.56 33 ER8a ExonRegion 0 30.89 42.93 188.07 50.03 23.89 53.69 34.79 68.80 70.18 108.56 210.74 44.45 23.62 308.81 315.53 214.93 225.50 202.62 86.28 106.89 99.02 51.24 60.87 34 E8a_E9a KnownJunction 0 20.89 17.56 168.44 39.09 15.79 30.38 24.82 47.40 40.31 79.38 147.83 31.36 6.82 249.28 377.16 244.38 208.60 109.06 41.22 80.98 116.57 37.29 64.71 35 I8 Intron 0 8.71 6.93 26.61 14.80 10.38 20.69 7.47 23.91 14.71 27.92 27.94 6.58 3.18 46.09 25.51 32.13 25.59 44.89 18.72 19.51 10.35 8.57 13.80 36 I8_AR1 ActiveIntronRegion 0 8.74 6.96 26.73 14.87 10.42 20.78 7.50 24.02 14.78 28.04 28.07 6.61 3.19 46.29 25.63 32.28 25.71 45.10 18.80 19.60 10.40 8.61 13.87 37 E9_Aa NovelBoundary 0 22.97 3.09 51.86 15.05 7.98 15.56 14.18 23.95 31.34 26.73 36.75 7.65 6.01 27.96 10.75 28.03 33.19 57.79 20.99 14.38 20.26 5.63 31.41 38 ER9a ExonRegion 0 32.52 39.46 219.74 51.84 15.14 62.59 32.69 70.40 59.93 95.76 178.82 42.39 17.90 257.95 333.04 198.96 202.02 125.60 87.58 83.37 119.97 49.19 59.69 39 E9a_E10a KnownJunction 0 58.38 51.77 282.90 58.60 11.46 62.80 27.91 97.76 63.40 97.99 202.31 60.02 25.32 316.38 381.85 238.23 196.17 148.73 81.60 55.16 122.01 45.50 51.30 40 I9 Intron 0 8.48 13.08 37.58 19.89 9.93 16.88 12.71 14.65 16.02 28.49 33.56 7.26 4.71 48.08 38.89 33.81 32.49 61.24 19.23 28.41 8.06 8.14 9.73 41 I9_SR1 SilentIntronRegion 0 6.61 9.28 23.95 14.35 13.90 21.96 15.57 11.97 11.10 22.15 27.70 8.06 6.51 47.67 37.22 30.99 35.05 44.23 17.74 20.04 6.18 7.91 11.61 42 I9_AR1 ActiveIntronRegion 0 9.24 14.61 43.05 22.13 8.39 14.91 11.61 15.75 18.01 31.07 35.97 6.96 4.01 48.37 39.66 35.02 31.57 68.12 19.86 31.79 8.83 8.26 9.02 43 E10_Aa NovelBoundary 0 9.04 0.00 32.85 14.92 8.15 19.48 8.26 8.63 11.83 37.15 22.69 0.00 13.31 49.97 31.65 32.81 9.54 71.76 4.33 15.15 5.50 8.76 19.89 44 ER10a ExonRegion 0 35.04 45.37 224.66 53.86 24.30 53.52 31.69 86.24 67.52 110.26 189.33 28.48 10.91 293.21 357.92 229.73 200.75 162.35 76.81 91.11 108.55 44.82 46.92 45 E10a_E11a KnownJunction 1 64.60 84.72 305.25 90.56 44.91 52.53 43.99 90.94 84.46 148.73 264.86 25.96 0.00 385.13 458.62 282.92 259.09 203.41 149.27 74.97 105.76 71.58 57.28 46 ER11a ExonRegion 1 64.18 66.16 303.48 101.69 51.44 65.33 45.39 99.10 87.67 147.66 275.54 18.69 12.94 363.90 413.15 242.68 252.92 250.72 121.83 128.29 109.67 63.99 61.21 47 E11a_E12a KnownJunction 1 62.60 78.14 362.32 146.34 40.92 75.30 43.24 98.58 99.19 172.29 288.23 0.00 8.28 360.76 411.15 259.42 260.96 243.29 152.29 164.84 119.04 63.68 56.08 48 ER12a ExonRegion 1 61.86 62.00 347.95 122.67 30.23 82.98 49.39 126.51 102.51 154.33 334.39 38.68 18.21 370.13 469.18 307.86 254.27 267.82 136.34 151.84 130.74 74.85 79.38 49 E12_Da NovelBoundary 0 21.63 3.09 70.84 21.41 7.64 32.08 8.79 9.78 26.82 101.54 24.43 12.60 0.00 46.56 44.38 39.65 33.47 144.51 9.51 59.51 8.15 5.57 23.47 50 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 4.37 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 3.00 0.00 0.00 0.00 51 E12a_E14a KnownJunction 0 119.28 63.54 346.00 127.96 44.31 72.52 45.44 159.29 86.54 133.77 345.67 44.86 67.37 335.98 575.07 370.84 248.71 240.43 141.09 132.95 120.22 75.07 85.28 52 I12 Intron 0 4.85 5.50 22.04 14.79 1.67 6.49 4.96 6.97 8.81 18.85 12.88 1.50 0.00 22.07 15.38 21.04 7.56 43.21 12.59 20.37 6.42 3.04 5.50 53 I12_AR1 ActiveIntronRegion 0 8.22 2.76 29.15 14.31 2.71 11.79 6.22 10.91 9.97 28.48 15.02 2.78 0.00 22.55 12.35 25.48 7.03 53.43 10.88 21.67 11.24 4.58 9.36 54 I12_AR2 ActiveIntronRegion 0 5.93 10.66 35.64 26.71 4.10 10.27 10.56 10.03 17.35 33.59 22.34 3.66 0.00 28.40 25.34 37.58 11.96 68.45 22.37 41.42 2.20 4.17 6.79 55 E13_Aa NovelBoundary 0 6.30 5.85 59.08 24.61 8.49 4.49 10.42 16.80 14.53 62.53 31.22 19.36 0.00 37.91 24.60 24.10 21.32 63.09 3.76 30.87 7.48 10.35 4.01 56 ER13a ExonRegion 0 6.76 2.37 29.37 19.07 0.94 6.44 9.67 5.28 9.55 30.55 15.73 3.14 2.18 21.66 20.11 24.92 12.71 35.85 11.62 27.88 5.47 6.66 5.20 57 E13_Da NovelBoundary 0 16.37 0.00 43.85 17.95 3.74 2.90 7.68 19.55 10.19 34.06 16.90 12.60 0.00 33.49 15.20 4.19 4.68 72.54 21.46 21.86 10.63 8.94 11.78 58 E13a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 2.41 0.00 3.42 0.00 0.00 4.80 3.26 6.18 0.00 0.00 59 I13 Intron 0 9.02 4.75 28.49 11.45 2.21 9.96 7.01 9.56 5.82 32.89 14.22 1.23 1.33 25.86 19.92 23.49 12.71 40.27 8.76 16.67 5.30 5.44 6.26 60 I13_AR1 ActiveIntronRegion 0 9.04 4.77 28.56 11.48 2.21 9.98 7.03 9.59 5.84 32.98 14.25 1.23 1.34 25.93 19.97 23.56 12.74 40.38 8.78 16.71 5.32 5.46 6.27 61 ER14a ExonRegion 0 42.15 39.79 172.28 65.74 18.60 33.48 24.45 83.31 64.77 101.88 157.64 24.12 12.24 195.85 322.38 150.44 154.45 129.28 64.84 89.25 72.87 48.07 38.74 62 IG21_SR1 SilentIntergenicRegion 0 3.94 1.83 16.98 3.73 4.48 3.17 3.44 10.98 4.44 22.38 4.08 2.17 1.07 7.09 7.65 6.96 5.23 17.75 4.98 10.01 2.59 1.56 4.75 63 IG21_AR2 ActiveIntergenicRegion 0 4.39 2.07 14.48 4.34 3.93 2.29 2.10 12.65 6.06 21.23 3.35 0.76 0.74 7.24 5.76 3.71 4.05 11.16 5.62 7.87 2.20 3.31 1.69