Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 HSD11B1L Gene 0 8.78 21.52 59.28 32.30 17.14 33.41 9.96 68.82 79.97 70.80 4.04 1.73 0.54 3.88 3.56 4.34 1.79 49.81 78.45 31.83 43.86 20.03 33.01 2 301382 Transcript 0 0.00 5.53 12.92 6.63 0.00 0.00 0.00 11.21 9.23 11.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29.18 13.08 5.94 9.88 11.88 0.00 3 411793 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 423665 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 342970 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 422535 Transcript 0 0.00 0.00 2.75 0.94 6.67 13.75 1.92 10.25 1.66 8.58 3.19 0.00 0.00 2.11 1.74 0.00 0.00 5.64 5.55 17.08 12.49 0.89 3.60 7 394584 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 339423 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 394587 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 ER1a ExonRegion 0 1.30 0.47 0.09 0.00 0.00 1.27 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 1.12 0.00 0.25 0.00 0.00 0.00 0.34 0.00 2.94 11 E1_Ad KnownBoundary 0 6.22 3.35 4.38 1.53 0.00 34.07 1.68 3.98 1.30 7.92 0.00 0.00 0.00 2.47 4.45 3.76 4.77 15.13 8.28 2.49 22.12 2.51 11.35 12 ER1b ExonRegion 0 2.12 2.03 1.23 0.00 0.00 16.50 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.97 2.90 0.00 3.30 1.85 0.00 0.00 6.61 0.00 2.94 13 ER1c ExonRegion 0 2.39 2.03 1.23 0.00 0.00 18.26 0.00 0.00 0.00 2.44 0.00 0.00 0.00 1.62 4.16 1.81 3.30 4.10 3.88 0.00 10.16 0.27 5.36 14 ER1d ExonRegion 0 8.47 13.27 20.01 8.80 15.20 42.56 19.92 20.32 26.09 22.73 2.17 1.07 0.00 3.28 3.43 4.19 3.60 34.49 73.23 18.44 27.41 8.90 27.10 15 E1_Da NovelBoundary 0 6.22 2.70 18.57 2.96 8.15 7.67 5.92 10.60 20.31 16.98 0.00 0.00 0.00 4.71 4.45 8.20 4.58 41.95 13.37 14.32 3.15 3.12 15.54 16 E1a_E2a KnownJunction 0 0.00 0.00 11.27 3.20 0.00 18.46 0.00 19.88 24.88 11.28 2.68 0.00 0.00 0.00 0.00 0.00 0.00 7.13 13.46 13.04 12.17 11.02 7.77 17 E1a_E3a KnownJunction 0 0.00 0.00 0.00 1.70 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.81 3.12 6.66 18 I1 Intron 0 3.62 6.66 16.58 10.73 15.34 13.11 10.35 21.68 23.98 21.25 1.30 2.39 0.86 2.66 2.74 3.98 2.95 16.62 40.79 15.68 8.37 3.88 8.75 19 I1_SR1 SilentIntronRegion 0 3.82 7.16 18.18 11.86 17.46 13.86 11.37 24.12 27.18 24.07 1.50 2.45 0.99 2.97 2.96 3.83 2.27 18.61 45.67 17.53 8.70 4.48 9.58 20 E2_Aa NovelBoundary 0 0.00 15.00 42.13 26.90 3.65 23.11 2.12 54.59 50.90 68.04 5.05 6.30 0.00 5.06 9.15 3.33 0.00 44.81 43.20 14.76 20.08 5.33 27.57 21 ER2a ExonRegion 0 2.90 16.53 42.11 21.04 4.71 15.20 4.76 42.44 43.21 59.36 6.18 2.09 2.26 4.89 0.70 5.23 5.39 59.17 114.42 43.51 61.60 15.61 53.10 22 E2_Da NovelBoundary 0 0.00 11.25 34.86 19.31 8.66 26.80 8.17 27.15 30.96 19.61 0.00 0.00 0.00 2.18 6.06 12.90 0.00 27.36 61.27 15.08 5.50 8.57 0.00 23 E2a_E3b KnownJunction 0 3.56 2.50 21.26 6.96 0.00 2.44 0.00 36.51 42.88 32.10 0.00 0.00 0.00 2.47 4.45 0.00 8.70 32.67 83.30 24.74 23.60 19.17 33.29 24 E2a_E6a KnownJunction 0 0.00 5.53 12.92 6.63 0.00 0.00 0.00 11.21 9.23 11.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29.18 13.08 5.94 9.88 11.88 0.00 25 E3_Aa NovelBoundary 0 3.19 21.97 24.81 14.38 46.01 59.57 14.57 25.88 30.64 21.57 0.00 0.00 0.00 4.59 0.00 7.78 0.00 25.62 25.32 11.70 16.68 3.12 3.59 26 E3_Ab NovelBoundary 0 2.82 6.05 27.08 11.75 12.39 48.27 10.51 32.16 38.02 31.27 2.58 0.00 0.00 0.00 4.82 0.00 4.49 11.81 16.85 8.56 19.58 9.37 16.39 27 ER3a ExonRegion 0 0.76 1.30 4.80 3.33 4.82 13.79 3.65 12.93 11.91 9.18 1.47 0.00 0.00 0.06 0.23 0.83 2.51 5.69 9.43 4.68 11.28 6.50 6.46 28 ER3b ExonRegion 0 8.45 14.78 46.28 29.06 17.78 33.18 17.23 63.73 83.44 58.70 5.17 1.40 1.33 3.85 6.58 2.17 2.39 71.27 94.24 47.63 62.28 18.38 42.47 29 E3_Da NovelBoundary 0 0.00 9.14 25.40 22.91 7.56 18.91 9.01 14.09 37.35 22.46 0.00 0.00 0.00 4.47 0.00 3.59 4.11 16.83 35.48 26.46 2.84 2.94 7.68 30 E3a_E4a KnownJunction 0 0.00 0.00 4.20 1.53 8.57 13.63 1.81 15.57 2.69 12.03 5.05 0.00 0.00 0.00 0.00 0.00 0.00 6.72 0.00 18.34 13.53 0.00 0.00 31 E3a_E5a KnownJunction 0 0.00 6.25 15.49 13.55 7.39 20.67 2.12 10.15 29.14 22.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 13.37 5.37 14.83 0.00 3.84 32 E3a_E6a KnownJunction 0 3.33 5.99 17.95 12.25 12.39 0.00 1.90 25.67 32.96 19.07 0.00 0.00 7.30 0.00 0.00 0.00 0.00 29.89 34.82 16.68 26.19 2.69 16.22 33 E4_Aa NovelBoundary 0 6.45 11.71 18.27 9.99 18.08 19.70 1.90 10.31 45.08 17.70 0.00 13.20 0.00 0.00 4.45 0.00 8.42 13.76 27.95 14.89 8.22 0.00 4.35 34 ER4a ExonRegion 0 0.00 0.00 1.31 0.34 4.77 13.88 2.03 4.93 0.64 5.12 1.32 0.00 0.00 4.22 3.48 0.00 0.00 4.56 11.10 15.82 11.46 1.77 7.19 35 E4_Da NovelBoundary 0 502.31 339.41 340.29 389.89 297.79 185.18 397.02 406.18 342.94 266.26 108.08 76.67 34.58 62.28 108.66 465.78 257.04 550.00 368.67 495.87 216.34 192.64 604.11 36 I4 Intron 0 0.71 16.83 13.88 8.23 17.17 9.91 6.26 14.35 13.99 14.14 0.33 0.60 0.00 0.00 0.00 3.01 0.00 5.43 14.52 5.03 4.09 3.50 1.98 37 I4_SR1 SilentIntronRegion 0 0.72 16.88 13.92 8.26 17.23 9.94 6.28 14.40 14.03 14.19 0.33 0.60 0.00 0.00 0.00 3.02 0.00 5.45 14.57 5.05 4.11 3.52 1.99 38 E5_Aa NovelBoundary 0 2.89 30.13 14.40 7.92 7.47 33.45 8.30 48.71 23.12 35.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.00 13.46 6.14 7.85 0.00 8.19 39 ER5a ExonRegion 0 4.71 18.25 20.90 13.92 5.88 18.26 5.63 30.94 34.45 27.94 2.64 0.00 1.76 1.12 0.00 0.00 0.00 21.27 26.90 16.30 19.68 6.36 12.19 40 E5_Da NovelBoundary 0 0.00 2.76 18.24 0.00 11.21 2.38 7.91 12.61 17.48 20.47 0.00 0.00 0.00 0.00 0.00 4.19 0.00 14.26 13.46 9.33 5.68 5.88 4.10 41 E5a_E6a KnownJunction 0 0.00 9.21 31.52 20.41 0.00 18.51 0.00 37.42 52.72 31.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.57 25.13 10.61 13.84 5.39 17.16 42 I5 Intron 0 0.58 5.85 11.02 3.34 4.77 9.55 4.54 11.30 19.18 17.57 0.79 0.00 0.53 1.28 0.00 0.81 0.00 10.57 17.47 6.13 10.88 1.43 2.82 43 I5_SR1 SilentIntronRegion 0 0.88 5.89 9.94 3.58 4.27 11.29 4.50 11.90 19.48 19.70 0.86 0.00 0.00 1.42 0.00 0.00 0.00 12.24 19.18 5.85 11.57 1.52 3.65 44 I5_AR1 ActiveIntronRegion 0 0.00 5.87 13.32 2.91 5.80 6.26 4.69 10.29 18.89 13.63 0.69 0.00 1.59 1.03 0.00 2.44 0.00 7.45 14.36 6.78 9.67 1.28 1.21 45 E6_Aa NovelBoundary 0 0.00 2.96 25.63 12.95 3.23 0.00 1.68 28.26 30.73 23.91 4.90 0.00 0.00 3.00 5.81 8.63 0.00 19.94 26.54 9.20 6.24 5.51 14.77 46 ER6a ExonRegion 0 6.10 15.23 45.83 16.50 9.63 19.31 4.61 45.54 66.28 53.43 4.62 0.00 0.71 2.42 1.14 0.00 0.00 44.29 67.31 24.86 38.21 12.50 21.29 47 E6a_E7a KnownJunction 0 3.19 30.39 57.42 19.78 20.29 18.68 12.41 70.48 89.32 53.00 7.00 0.00 0.00 0.00 0.00 4.02 0.00 42.03 64.47 30.68 43.37 14.21 15.96 48 E7_Aa NovelBoundary 0 0.00 0.00 22.94 3.66 4.33 2.56 2.21 11.91 17.22 18.37 0.00 0.00 0.00 2.47 0.00 0.00 0.00 13.06 0.00 8.37 2.78 3.12 3.59 49 ER7a ExonRegion 0 5.31 17.00 55.77 24.40 15.29 33.63 4.41 67.69 87.71 73.50 4.40 2.35 0.00 1.68 1.11 3.86 0.00 66.01 58.29 36.87 61.00 14.10 28.55 50 E7_Da NovelBoundary 0 0.00 3.16 23.83 3.06 12.73 0.00 1.68 10.97 9.20 8.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.09 12.24 6.01 0.00 0.00 0.00 51 E7a_E8a KnownJunction 0 3.19 25.78 73.24 41.42 16.89 31.52 8.83 63.50 107.20 84.83 2.68 0.00 0.00 2.88 0.00 15.89 0.00 103.63 98.92 50.94 55.29 12.25 32.86 52 E8_Aa NovelBoundary 0 3.04 0.00 14.37 4.10 0.00 5.56 1.68 17.79 9.20 6.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.82 3.95 0.00 8.22 0.00 12.12 53 ER8a ExonRegion 0 7.59 15.37 48.65 24.16 11.64 25.63 8.26 54.51 62.28 67.95 2.48 0.00 0.00 2.45 1.26 1.47 2.03 52.15 46.34 34.94 50.07 11.75 19.88 54 E8_Da NovelBoundary 0 7.26 3.29 40.92 14.08 4.33 7.21 0.00 21.56 19.99 51.01 0.00 0.00 0.00 2.24 0.00 0.00 0.00 21.51 34.17 15.92 2.84 0.00 8.45 55 E8a_E9a KnownJunction 0 6.67 12.17 34.92 16.61 15.87 37.88 2.25 41.61 58.19 41.82 2.47 0.00 0.00 0.00 0.00 3.67 0.00 32.38 20.24 23.71 16.68 8.94 24.33 56 E8a_E9b KnownJunction 0 0.00 0.00 1.12 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 E9_Aa NovelBoundary 0 6.45 18.15 60.26 16.65 4.07 22.20 8.17 24.93 37.35 39.65 0.00 0.00 0.00 0.00 0.00 8.20 0.00 29.85 41.88 19.75 11.49 11.02 0.00 58 ER9a ExonRegion 0 6.69 15.93 56.73 20.03 7.60 29.52 6.80 57.43 61.71 61.53 4.90 0.00 0.00 3.73 3.04 3.37 0.00 29.76 43.43 25.01 32.03 12.07 31.93 59 E9_Ab KnownBoundary 0 7.19 49.60 99.02 30.63 18.68 30.49 4.11 119.24 80.67 70.11 7.58 0.00 0.00 7.00 4.45 4.27 0.00 31.21 49.79 39.12 31.51 14.21 55.91 60 ER9b ExonRegion 0 14.06 36.30 103.25 61.80 29.97 45.22 11.26 121.35 138.16 118.69 5.08 3.78 0.56 5.78 5.72 8.11 1.95 67.02 119.05 40.35 54.23 37.57 45.94