Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 BRUNOL5 Gene 0 13.06 94.97 74.92 27.53 30.23 1.01 16.93 126.98 215.24 128.23 0.11 0.00 0.00 0.33 0.11 0.08 0.00 222.25 197.65 209.99 0.00 0.23 0.08 2 292672 Transcript 0 11.98 91.48 65.39 24.56 29.43 1.49 15.33 111.87 188.47 104.93 0.19 0.00 0.00 0.07 0.16 0.10 0.00 178.52 181.47 170.51 0.00 0.53 0.05 3 334293 Transcript 0 0.00 0.00 85.83 15.72 0.00 0.00 0.00 76.64 158.10 105.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 124.15 0.00 0.00 0.00 0.00 0.00 4 ER1a ExonRegion 0 0.00 0.00 0.55 0.00 0.21 0.00 1.15 0.50 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.22 1.62 0.00 0.00 0.00 5 E1_Ab KnownBoundary 0 0.00 0.00 1.39 0.00 0.00 0.00 2.03 5.79 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.92 22.87 5.69 0.00 0.00 0.00 6 ER1b ExonRegion 0 0.95 5.67 9.53 4.70 4.91 0.00 3.56 35.20 49.91 40.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58.78 31.82 49.42 0.00 0.00 0.00 7 E1a_E2a KnownJunction 0 9.93 24.86 25.61 12.65 24.87 0.00 14.93 90.65 144.36 117.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 137.38 53.18 121.57 0.00 0.00 0.00 8 ER2a ExonRegion 0 4.90 38.17 25.60 17.49 9.54 0.00 13.45 100.92 172.50 95.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 180.79 90.07 163.60 0.00 0.00 0.00 9 E2a_E3a KnownJunction 0 6.45 49.27 33.50 31.66 0.00 0.00 15.68 85.15 198.61 109.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 207.81 96.19 164.46 0.00 0.00 0.00 10 ER3a ExonRegion 0 11.48 33.44 36.08 20.10 10.96 0.00 9.50 79.71 197.69 104.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 159.69 112.16 126.47 0.00 0.00 0.00 11 E3a_E4a KnownJunction 0 10.08 30.06 39.92 11.39 30.22 0.00 14.53 121.99 230.87 121.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 212.66 156.05 146.69 0.00 0.00 0.00 12 I3 Intron 0 3.08 14.20 11.72 3.43 6.28 0.18 7.14 13.72 21.93 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54.90 37.22 42.45 0.00 0.00 0.10 13 I3_SR1 SilentIntronRegion 0 3.78 19.59 12.99 4.51 8.12 0.36 11.16 19.48 27.14 14.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65.49 44.87 53.05 0.00 0.00 0.00 14 I3_AR1 ActiveIntronRegion 0 3.57 8.91 13.81 4.11 5.26 0.00 4.34 11.09 20.03 13.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56.76 40.89 43.61 0.00 0.00 0.41 15 ER4a ExonRegion 0 4.09 33.55 76.28 22.86 15.99 0.00 7.24 134.18 260.15 155.38 0.00 0.00 0.00 1.08 0.00 0.00 0.00 216.32 166.45 232.01 0.00 0.00 0.00 16 E4a_E5a KnownJunction 0 10.15 68.47 110.23 37.62 32.34 0.00 18.86 195.76 388.91 245.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 470.87 361.14 388.62 0.00 0.00 0.00 17 ER5a ExonRegion 0 6.27 58.34 95.40 31.86 24.48 0.00 13.07 163.17 338.68 204.99 0.00 0.00 0.00 0.87 0.00 0.00 0.00 363.52 255.98 315.45 0.00 0.00 0.00 18 E5a_E6a KnownJunction 0 10.67 72.42 92.75 34.69 20.29 0.00 10.47 199.83 305.06 192.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 402.31 234.55 255.48 0.00 0.00 0.00 19 ER6a ExonRegion 0 16.89 89.84 118.04 33.21 20.35 2.54 26.36 208.80 350.75 226.28 0.00 0.00 0.00 1.33 0.00 0.00 0.00 550.14 396.11 388.12 0.00 0.00 0.00 20 E6a_E7a KnownJunction 0 7.33 99.06 98.10 26.07 35.99 0.00 24.20 207.26 312.87 218.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 381.50 375.45 415.72 0.00 0.00 0.00 21 ER7a ExonRegion 0 10.51 85.50 102.72 21.91 30.28 0.97 19.38 147.24 264.75 175.76 0.00 0.00 0.00 0.48 0.00 0.00 0.00 412.75 323.85 302.67 0.00 0.00 0.00 22 E7a_E8a KnownJunction 0 25.56 82.62 140.18 40.89 63.50 2.90 19.92 173.54 347.59 247.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 439.61 494.04 370.53 0.00 0.00 0.00 23 ER8a ExonRegion 0 9.23 66.99 102.96 21.47 27.06 0.66 19.77 152.38 284.94 190.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 267.59 312.45 343.63 0.00 0.00 0.00 24 E8_Da KnownBoundary 0 3.56 36.64 43.52 14.95 16.98 0.00 5.92 85.89 152.37 94.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 162.12 108.05 179.42 0.00 0.00 0.00 25 E8a_E8b KnownJunction 0 0.00 0.00 85.83 15.72 0.00 0.00 0.00 76.64 158.10 105.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 124.15 0.00 0.00 0.00 0.00 0.00 26 E8_Ab KnownBoundary 0 17.34 47.49 85.39 21.88 18.51 2.33 17.27 85.64 149.36 109.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 187.99 112.94 168.36 0.00 0.00 0.00 27 ER8b ExonRegion 0 12.70 74.56 115.80 32.25 23.64 1.83 20.96 157.58 289.84 202.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 322.74 265.98 354.96 0.00 0.00 0.00 28 ER8c ExonRegion 0 16.53 78.29 118.84 37.77 29.43 1.69 19.40 155.89 274.98 178.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 324.46 322.89 293.78 0.00 0.00 0.00 29 E8b_E9a KnownJunction 0 23.56 79.46 125.45 38.72 43.80 2.21 11.48 156.53 296.32 166.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 395.26 363.21 256.76 0.00 0.00 0.00 30 ER9a ExonRegion 0 14.98 104.00 103.15 37.58 50.67 2.01 17.69 150.35 299.54 170.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 358.38 328.90 305.84 0.00 0.07 0.00 31 E9a_E10a KnownJunction 0 36.60 122.61 120.78 35.96 49.83 2.90 34.98 157.68 320.02 185.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 436.01 350.41 351.80 0.00 0.00 0.00 32 ER10a ExonRegion 0 9.42 91.24 70.11 24.43 35.71 2.51 18.30 113.40 219.16 111.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 188.80 212.81 227.56 0.00 1.22 0.00 33 E10a_E11a KnownJunction 0 3.48 66.17 28.06 12.05 20.71 2.44 10.20 87.04 173.06 66.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 124.32 116.33 118.18 0.00 0.00 0.00 34 I10 Intron 0 8.19 43.26 20.04 10.67 19.24 0.00 13.36 27.40 30.64 22.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33.41 42.72 36.23 0.00 0.18 0.00 35 I10_SR1 SilentIntronRegion 0 8.12 42.53 20.45 11.24 19.78 0.00 13.67 28.23 31.39 22.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32.47 41.52 37.25 0.00 0.19 0.00 36 I10_AR2 ActiveIntronRegion 0 10.38 62.14 15.05 1.73 11.81 0.00 9.35 15.89 20.94 16.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54.64 69.27 22.12 0.00 0.00 0.00 37 E11_Aa NovelBoundary 0 3.78 51.96 28.18 10.69 0.00 0.00 11.00 18.77 39.12 19.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.79 50.73 51.39 0.00 0.00 0.00 38 ER11a ExonRegion 0 11.69 86.86 38.60 16.81 29.43 0.52 12.77 98.15 177.71 83.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 169.86 118.54 148.07 0.00 0.00 0.00 39 ER11b ExonRegion 0 13.00 95.48 72.71 20.96 39.37 0.79 26.73 135.23 230.91 110.21 0.00 0.00 0.00 0.00 1.93 0.00 0.00 256.84 223.73 216.72 0.00 0.00 0.00 40 ER11c ExonRegion 0 11.39 103.54 95.38 38.60 51.63 3.94 26.56 171.50 293.67 153.73 1.03 0.00 0.00 0.00 0.79 0.00 0.00 310.08 313.94 252.90 0.00 0.64 0.00 41 E11b_E12a KnownJunction 0 24.52 157.87 134.89 38.62 46.52 2.73 23.10 210.34 354.25 204.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 385.93 432.01 306.04 0.00 3.12 0.00 42 E12_Aa NovelBoundary 0 3.41 6.71 25.07 5.26 16.64 0.00 10.73 20.13 33.45 17.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64.96 37.08 30.23 0.00 3.00 0.00 43 ER12a ExonRegion 0 7.96 56.09 74.65 34.61 25.79 0.79 15.58 135.42 213.57 138.53 0.68 0.00 0.00 0.41 0.62 0.90 0.00 231.96 258.56 193.16 0.00 0.32 0.00 44 E12_Da NovelBoundary 0 32.01 129.52 69.87 21.41 59.25 0.00 22.70 126.80 202.23 152.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 247.73 175.53 160.24 0.00 2.94 0.00 45 E12a_E13a KnownJunction 0 0.00 3.16 2.66 0.00 0.00 0.00 0.00 0.00 2.66 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 9.51 0.00 0.00 0.00 0.00 46 I12 Intron 0 19.00 157.30 65.83 24.09 56.33 1.60 27.72 99.29 141.55 80.70 0.19 0.00 0.41 0.26 0.00 0.12 0.00 120.90 187.19 134.86 0.00 0.44 0.00 47 I12_AR1 ActiveIntronRegion 0 16.96 137.39 60.06 21.25 48.12 1.54 26.43 89.93 133.92 78.81 0.21 0.00 0.45 0.29 0.00 0.06 0.00 121.16 185.95 129.45 0.00 0.31 0.00 48 I12_AR2 ActiveIntronRegion 0 37.78 340.24 118.93 50.20 131.74 2.16 39.73 185.44 212.31 98.57 0.00 0.00 0.00 0.00 0.00 0.58 0.00 119.49 199.94 185.25 0.00 1.63 0.00 49 E13_Aa NovelBoundary 0 33.86 309.81 184.62 91.13 247.28 5.79 102.46 363.59 410.09 195.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 133.73 145.42 375.19 0.00 0.00 4.27 50 ER13a ExonRegion 0 36.11 275.07 97.95 48.07 66.96 1.18 27.66 146.31 191.34 94.38 0.00 0.00 0.00 0.22 0.00 0.00 0.00 59.39 109.12 159.65 0.00 0.67 0.47 51 IG35_SR1 SilentIntergenicRegion 0 0.71 10.23 2.45 0.68 2.69 0.00 1.78 0.86 4.27 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 16.03 3.57 0.00 0.00 0.00