Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MUM1 Gene 0 53.51 142.45 132.18 103.95 92.67 216.77 73.88 168.29 201.48 156.82 87.33 58.08 40.82 122.13 101.31 87.25 90.48 168.65 119.64 157.85 111.08 92.05 101.92 2 415183 Transcript 0 0.00 0.00 0.00 0.00 1.38 0.61 0.00 0.00 1.28 0.67 1.32 0.00 5.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 3 356765 Transcript 0 13.92 32.54 15.11 16.53 36.95 87.81 38.70 29.96 49.35 30.84 10.18 0.17 7.04 7.31 9.93 19.55 14.09 68.01 12.99 12.11 11.78 6.81 20.10 4 344663 Transcript 0 52.95 148.10 136.28 125.46 81.28 189.03 47.86 164.60 166.64 128.28 67.69 30.59 21.04 84.37 97.58 56.32 57.09 131.34 84.47 133.63 80.19 73.51 78.82 5 311401 Transcript 0 14.16 45.98 23.16 10.19 59.93 83.94 22.95 25.39 84.86 60.79 39.55 51.87 27.48 49.02 37.05 39.94 37.93 36.66 55.03 93.18 18.19 65.60 34.35 6 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.08 0.19 0.06 0.00 0.63 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 7 I1_AR1 ActiveIntronRegion 0 12.89 75.81 47.39 39.42 32.74 105.31 41.50 33.58 18.61 5.74 0.00 0.00 0.22 0.00 0.23 0.00 0.00 26.72 15.05 34.28 0.38 1.07 0.50 8 I1_AR2 ActiveIntronRegion 0 0.81 10.80 15.10 9.78 15.46 17.58 5.19 23.18 50.51 15.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.63 19.66 12.29 0.42 0.00 0.85 9 ER2a ExonRegion 0 27.84 65.07 8.67 3.98 73.89 175.62 77.40 9.97 21.38 29.11 20.37 0.33 14.07 14.62 19.86 39.09 28.18 41.22 25.97 24.22 23.56 13.62 40.21 10 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 2.68 1.22 0.00 0.00 2.47 1.15 2.58 0.00 9.38 1.62 0.00 0.00 0.00 0.00 0.00 0.00 3.67 0.00 0.00 11 ER3b ExonRegion 1 40.21 99.65 13.48 8.18 117.73 295.24 119.16 15.56 43.23 48.17 34.79 4.33 32.83 27.61 31.91 59.44 49.51 62.82 47.78 44.68 48.48 18.75 67.54 12 ER3c ExonRegion 1 43.03 102.86 39.07 28.48 123.15 208.29 84.50 63.87 98.65 77.25 38.58 41.21 77.89 35.26 34.89 52.97 65.81 109.63 84.71 85.27 62.82 33.71 65.87 13 E3_Da KnownBoundary 0 6.52 11.97 25.63 18.88 24.79 18.11 0.00 45.35 45.49 33.23 14.58 10.80 47.40 9.30 14.34 4.19 11.69 61.60 42.45 34.32 20.45 22.41 26.46 14 E3a_E3d KnownJunction 0 0.00 0.00 21.55 29.07 0.00 0.00 0.00 49.95 77.31 32.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 94.80 0.00 0.00 0.00 0.00 0.00 15 E3_Ad KnownBoundary 0 17.56 36.84 13.25 28.93 3.48 12.49 17.09 35.20 62.50 26.22 12.00 36.91 19.64 19.07 11.50 35.12 17.77 77.06 102.31 49.92 14.02 41.64 44.30 16 ER3d ExonRegion 1 19.90 50.84 39.46 47.16 29.43 46.95 20.39 90.57 124.75 60.79 27.83 90.92 108.81 46.45 46.42 39.23 28.39 124.17 128.69 100.85 38.34 88.76 72.83 17 ER3e ExonRegion 1 23.08 62.00 58.40 48.07 19.12 61.01 25.06 85.12 149.39 88.51 47.00 94.19 63.94 63.06 80.81 62.05 86.47 113.34 146.92 117.38 66.49 114.14 80.79 18 E3b_E4a KnownJunction 1 35.86 73.87 92.49 56.27 24.02 72.80 27.82 113.90 195.63 125.31 68.81 69.02 67.53 56.27 132.39 75.02 175.32 121.67 154.36 136.85 110.15 118.43 82.55 19 ER4a ExonRegion 0 21.77 81.89 133.48 69.24 50.36 111.50 46.60 144.88 230.59 178.84 117.25 157.18 91.46 141.50 109.88 121.75 177.78 120.90 149.94 217.21 134.78 125.98 115.58 20 E4_Ab NovelBoundary 1 51.79 118.86 148.34 105.45 121.56 143.50 102.77 212.76 304.48 225.51 126.66 286.44 107.30 195.36 100.01 192.00 165.87 179.95 221.47 316.45 151.35 195.52 162.53 21 E4_Da NovelBoundary 1 11.34 44.79 21.17 21.01 35.40 72.52 39.75 49.99 74.83 33.66 15.53 62.42 33.28 22.01 10.75 30.08 8.70 42.53 22.59 38.54 6.05 40.54 24.07 22 E4a_E5a KnownJunction 1 53.79 135.30 100.65 89.30 113.50 168.99 91.77 117.55 234.66 148.57 83.13 114.34 80.19 81.11 48.83 152.10 60.21 150.89 161.13 162.80 79.38 126.57 110.72 23 ER4b ExonRegion 1 37.89 115.98 116.45 93.18 94.10 129.41 81.56 150.09 244.26 182.59 102.89 172.31 91.30 140.11 86.36 172.98 94.63 156.94 175.09 205.32 116.72 155.01 127.94 24 I4 Intron 0 43.79 115.11 17.80 29.88 65.73 85.98 53.12 54.26 72.90 45.42 38.00 64.38 33.97 43.67 29.49 30.40 38.55 32.32 35.86 59.99 23.16 40.29 29.49 25 I4_AR1 ActiveIntronRegion 0 43.87 115.32 17.84 29.94 65.85 86.13 53.21 54.36 73.02 45.50 38.07 64.50 34.03 43.75 29.54 30.46 38.62 32.38 35.92 60.10 23.20 40.36 29.54 26 E5_Aa NovelBoundary 1 45.79 120.18 40.86 54.01 85.82 106.70 56.40 84.16 113.54 73.63 22.85 116.74 41.72 62.92 43.51 35.80 48.34 41.62 56.75 106.23 16.49 35.27 56.43 27 ER5a ExonRegion 0 80.64 198.35 138.98 109.59 178.33 372.75 167.30 190.42 343.03 209.35 146.66 143.79 114.28 160.56 124.18 170.71 171.88 276.62 236.79 221.91 155.56 183.56 157.09 28 E5_Da NovelBoundary 1 24.67 29.14 24.33 24.37 23.77 47.98 24.82 13.06 38.11 13.24 2.68 30.16 19.97 10.24 11.50 10.68 13.84 24.17 31.34 29.47 19.03 0.00 3.76 29 E5a_E6a KnownJunction 1 10.15 39.27 17.71 6.49 78.01 88.93 33.92 27.48 87.82 67.05 27.22 73.97 42.37 54.15 33.75 55.88 39.18 40.67 16.47 98.05 17.67 59.83 41.74 30 E5a_E7a KnownJunction 0 173.96 214.63 175.54 112.67 310.02 697.67 268.20 255.73 378.12 220.51 148.20 170.31 136.03 149.57 135.11 206.61 190.74 297.39 210.92 226.52 182.37 147.88 215.88 31 I5 Intron 0 5.27 18.55 9.84 6.74 8.88 17.49 8.78 11.75 15.26 8.52 3.21 26.40 11.55 5.59 10.90 14.79 8.21 6.10 10.57 18.53 4.57 11.26 2.44 32 I5_AR1 ActiveIntronRegion 0 5.35 18.82 10.01 6.85 9.02 17.78 8.93 11.93 15.51 8.66 3.26 26.84 11.74 5.68 11.08 15.03 8.35 6.20 10.74 18.81 4.64 11.40 2.48 33 E6_Aa NovelBoundary 0 26.97 15.26 18.01 16.28 39.47 32.88 17.18 6.61 27.00 11.55 2.26 12.60 6.82 11.60 8.90 0.00 9.44 13.80 28.80 31.96 12.42 5.08 12.29 34 ER6a ExonRegion 0 28.56 66.69 36.62 19.04 53.89 88.12 28.58 33.04 92.26 77.87 60.96 70.23 33.25 63.83 56.38 52.31 56.85 45.11 65.88 112.77 28.69 83.08 31.52 35 E6_Da NovelBoundary 1 21.78 23.94 27.79 17.38 4.16 7.55 11.84 6.53 30.12 20.25 11.58 48.77 13.47 41.09 69.23 28.62 13.18 21.76 18.45 34.39 10.26 29.82 39.44 36 E6a_E7a KnownJunction 0 3.78 31.97 15.14 5.03 47.88 74.79 6.36 15.65 74.51 37.45 30.48 11.40 6.82 29.08 21.01 11.62 17.77 24.21 82.73 68.71 8.22 53.89 29.79 37 I6 Intron 0 21.96 19.73 14.28 11.12 18.83 45.03 21.46 21.51 24.21 19.25 9.69 22.08 28.19 32.26 27.37 18.59 21.12 20.80 24.23 40.15 17.46 19.18 22.02 38 I6_AR1 ActiveIntronRegion 0 22.00 19.76 14.30 11.13 18.86 45.10 21.48 21.54 24.24 19.28 9.70 22.12 28.23 32.31 27.41 18.62 21.14 20.83 24.26 40.21 17.48 19.21 22.05 39 E7_Aa NovelBoundary 1 9.85 12.56 19.75 6.79 19.10 42.65 26.50 12.57 16.52 25.92 4.11 0.00 26.62 14.48 10.26 11.88 9.44 28.02 26.64 40.01 14.27 2.82 30.82 40 ER7a ExonRegion 0 48.36 123.69 140.00 93.17 97.40 223.57 90.62 183.80 247.18 197.04 113.70 63.23 48.01 166.14 105.86 120.91 128.45 247.60 168.93 200.78 153.96 111.36 135.11 41 E7a_E8a KnownJunction 1 69.57 130.11 179.86 84.34 195.76 216.81 137.74 205.62 254.63 204.23 118.35 54.62 12.66 199.84 126.09 127.06 152.78 135.06 131.49 136.14 123.25 120.63 183.79 42 E8_Aa NovelBoundary 0 0.00 33.15 7.69 10.26 20.03 23.74 27.12 13.84 18.03 26.57 5.32 6.30 20.13 7.12 8.90 14.87 36.09 27.23 24.00 30.23 0.00 0.00 3.50 43 ER8a ExonRegion 0 57.21 156.07 141.47 89.10 144.23 286.40 118.72 205.48 270.64 211.12 116.32 68.38 53.66 177.04 102.48 106.12 144.53 185.70 155.49 189.22 154.52 114.31 137.48 44 E8a_E9a KnownJunction 0 99.65 208.06 268.50 193.32 207.39 438.10 164.15 308.71 388.97 294.97 150.93 75.92 61.03 200.25 82.21 125.27 119.12 286.44 175.91 195.97 177.24 144.39 152.63 45 I8_AR1 ActiveIntronRegion 0 10.56 29.43 18.76 10.38 2.90 22.51 17.26 7.00 4.87 7.01 2.12 12.99 5.76 2.70 6.29 3.37 1.71 15.25 8.56 11.00 2.97 3.04 0.00 46 I8_AR2 ActiveIntronRegion 0 15.20 19.41 13.66 14.67 3.94 7.97 13.58 6.13 7.01 1.94 1.16 6.14 9.38 3.31 5.43 4.70 0.00 17.37 15.12 8.67 3.53 0.00 0.00 47 E9_Aa NovelBoundary 0 2.74 8.16 15.82 21.94 11.88 33.28 32.19 3.53 12.21 9.80 0.00 0.00 13.47 2.35 6.30 0.00 0.00 6.26 12.80 2.68 2.66 6.25 6.74 48 ER9a ExonRegion 0 91.96 196.55 223.20 162.18 223.83 478.71 184.96 278.19 361.27 279.62 161.59 82.26 74.34 221.12 119.10 148.75 167.19 275.78 265.50 243.08 177.95 159.29 202.48 49 ER9b ExonRegion 0 89.89 222.78 224.46 154.67 225.65 468.88 158.49 284.72 360.97 282.99 165.81 141.43 106.77 239.35 148.87 161.84 190.29 250.42 253.46 259.95 138.19 162.56 218.75 50 E9b_E10a KnownJunction 0 65.79 220.42 189.56 121.90 151.95 469.05 127.23 259.10 332.58 251.32 132.19 123.34 98.69 219.44 154.89 152.52 135.67 204.24 166.69 205.94 138.38 147.63 177.64 51 ER10a ExonRegion 0 64.02 165.09 197.52 131.39 160.06 393.65 145.64 276.44 330.61 241.36 158.32 132.92 93.98 237.86 125.21 145.09 165.73 228.16 216.65 231.06 146.25 154.97 193.28 52 E10a_E11a KnownJunction 0 106.39 202.60 176.96 160.89 202.12 381.03 192.11 326.09 365.33 257.98 180.10 105.48 119.31 207.02 108.54 134.84 192.61 213.28 208.95 234.51 182.92 168.15 171.24 53 I10_SR1 SilentIntronRegion 0 2.45 24.44 8.69 13.01 3.61 6.18 6.16 6.20 18.28 16.81 10.36 8.89 2.92 12.38 10.75 12.66 14.28 23.51 9.11 17.38 23.18 8.19 21.75 54 E11_Aa NovelBoundary 0 26.15 35.91 18.04 21.31 4.33 15.33 3.40 14.75 19.79 17.08 12.53 18.91 13.64 9.77 9.64 4.10 28.99 27.82 7.72 16.11 13.84 16.90 20.06 55 ER11a ExonRegion 0 59.37 185.79 188.95 147.30 205.29 363.39 173.46 286.61 304.10 235.00 180.08 198.23 171.15 193.14 117.95 159.18 177.76 197.71 243.34 212.83 197.07 171.43 153.33 56 E11_Da NovelBoundary 0 9.78 71.76 4.79 22.31 12.48 4.66 8.35 14.29 51.94 38.17 11.37 25.06 6.33 24.84 10.75 22.99 13.93 22.76 8.28 23.97 11.74 38.15 24.33 57 E11a_E12a KnownJunction 1 65.34 251.80 229.71 140.97 202.04 294.38 177.80 263.86 281.02 219.03 153.78 232.13 131.32 177.94 122.75 134.92 138.66 186.95 217.14 178.14 159.94 146.16 126.00 58 I11_SR1 SilentIntronRegion 0 4.78 31.93 13.83 16.57 8.06 6.93 5.16 4.76 18.03 19.36 8.71 8.72 9.02 15.96 14.77 14.05 14.60 18.17 12.58 20.15 17.94 5.20 13.80 59 E12_Aa NovelBoundary 0 3.19 34.60 10.59 5.49 3.23 7.89 7.95 3.98 30.64 17.03 4.74 0.00 0.00 16.60 29.92 9.83 16.46 24.46 3.86 16.81 23.17 2.39 38.75 60 ER12a ExonRegion 1 37.26 166.51 179.55 126.44 111.75 239.55 103.95 210.64 257.83 193.87 102.14 177.39 103.18 146.17 103.49 103.05 140.37 112.13 115.97 155.46 166.67 123.39 127.74 61 E12a_E13a KnownJunction 1 59.86 226.60 166.46 119.00 137.61 348.95 170.29 258.36 276.65 226.98 116.19 204.82 96.10 179.12 111.26 118.94 131.56 182.89 138.83 177.50 216.90 137.84 140.00 62 ER13a ExonRegion 0 72.21 200.89 177.53 135.89 138.46 377.83 179.36 257.30 261.99 238.67 144.47 163.93 81.39 192.51 130.90 107.70 121.10 186.59 171.82 204.30 200.15 135.27 138.43 63 E13_Da NovelBoundary 1 0.00 0.00 1.74 6.73 8.15 6.98 9.54 1.68 8.74 1.21 0.00 0.00 25.81 0.00 14.34 0.00 4.02 2.57 4.80 4.99 0.00 2.51 6.32 64 E13a_E14a KnownJunction 0 63.86 269.89 163.86 158.92 195.16 445.20 211.80 218.72 225.29 214.90 154.51 122.44 55.84 172.70 95.19 98.69 113.42 222.02 227.39 178.58 173.16 139.24 147.51 65 ER14a ExonRegion 0 51.70 145.50 117.96 72.20 68.93 234.38 85.49 150.32 197.71 159.18 78.43 57.51 31.80 141.53 108.50 93.16 86.00 197.49 100.50 143.84 129.05 78.98 94.97 66 E14_Da NovelBoundary 0 23.93 24.73 42.81 33.46 15.87 30.78 22.83 41.32 86.37 43.17 10.27 0.00 0.00 7.95 28.56 24.18 21.88 81.58 31.34 56.76 42.81 17.94 25.10 67 E14a_E15a KnownJunction 0 32.45 83.01 113.21 49.04 49.66 165.42 78.65 108.56 153.44 137.86 71.18 18.31 8.28 112.90 145.74 99.89 73.59 133.07 119.34 109.62 86.98 72.56 104.74 68 I14 Intron 0 18.78 65.90 28.42 36.79 59.84 107.46 48.60 48.58 80.37 38.49 10.88 13.77 12.94 19.89 21.22 15.16 16.13 51.34 40.45 52.90 15.57 28.12 41.34 69 I14_AR1 ActiveIntronRegion 0 6.69 15.60 15.25 11.92 10.26 31.04 11.35 18.59 31.56 18.90 3.93 7.41 3.18 12.27 15.10 6.04 8.94 38.13 25.16 34.57 15.91 14.11 20.54 70 I14_SR1 SilentIntronRegion 0 20.14 112.91 23.64 50.67 71.77 76.66 49.55 55.05 102.46 49.29 13.87 13.86 21.43 24.41 23.53 18.54 18.02 36.56 44.71 49.11 10.98 37.05 52.67 71 I14_AR2 ActiveIntronRegion 0 24.52 56.34 39.78 39.63 78.17 175.50 68.86 60.33 90.16 40.89 12.41 17.32 11.60 20.60 22.88 17.59 18.71 70.88 45.74 66.45 19.15 28.87 44.01 72 E15_Aa NovelBoundary 0 40.60 102.42 50.77 54.61 34.72 95.91 47.34 89.05 151.30 66.38 15.11 11.40 39.28 26.78 13.23 19.91 22.44 117.89 74.07 119.97 38.36 45.07 47.63 73 ER15a ExonRegion 0 98.62 166.64 121.60 87.06 88.63 282.57 86.95 179.45 235.05 183.53 91.22 41.88 28.83 171.96 158.30 136.75 98.47 206.76 119.04 179.01 137.60 93.73 126.94 74 E15_Da NovelBoundary 0 24.60 59.86 58.22 35.53 14.94 37.59 25.04 61.04 76.71 49.00 9.90 5.85 0.00 22.37 31.89 31.70 13.74 146.45 66.83 88.08 17.67 8.57 33.72 75 E15a_E16a KnownJunction 0 176.03 208.19 85.39 78.25 129.46 316.86 89.92 172.51 218.14 148.33 82.49 31.81 33.44 154.34 73.92 157.91 113.79 130.08 69.46 112.11 95.01 91.24 83.06 76 I15 Intron 0 17.39 38.66 35.70 34.34 28.48 51.46 25.37 37.84 52.65 38.69 10.43 5.06 4.64 19.66 17.16 20.05 18.01 93.88 50.90 73.23 15.32 16.49 29.23 77 I15_AR1 ActiveIntronRegion 0 18.43 40.08 41.33 36.86 27.69 50.99 25.96 41.10 60.95 44.50 11.61 3.99 3.57 20.83 18.11 22.34 19.23 106.80 51.34 83.45 18.07 16.87 29.93 78 I15_SR1 SilentIntronRegion 0 12.45 31.13 25.62 32.67 30.67 54.67 25.00 34.66 37.80 28.59 8.32 7.54 8.31 18.36 16.47 16.11 15.87 72.64 54.57 52.52 8.55 16.51 29.04 79 I15_AR3 ActiveIntronRegion 0 31.52 63.82 0.00 0.00 29.39 40.29 17.64 0.00 0.00 0.00 3.00 8.33 0.00 7.20 4.82 4.66 10.36 0.00 19.99 25.04 10.37 9.81 18.39 80 E16_Aa NovelBoundary 0 252.04 165.30 35.63 63.69 102.63 106.19 35.51 89.42 72.80 39.51 9.27 6.30 6.82 24.31 27.44 38.88 25.43 49.21 95.34 82.33 8.46 17.27 35.08 81 ER16a ExonRegion 0 157.53 289.33 102.85 97.45 125.94 244.50 77.57 166.83 192.61 164.28 69.08 49.27 36.95 171.54 126.20 142.61 86.96 85.57 117.31 156.31 115.47 86.93 82.18 82 E16_Da KnownBoundary 0 130.25 330.47 163.80 150.60 104.50 182.45 53.97 216.13 215.48 206.65 43.48 30.76 39.12 118.14 119.54 52.89 57.13 112.21 92.33 160.30 119.79 100.79 71.02 83 ER16b ExonRegion 0 52.95 148.10 136.28 125.46 81.28 189.03 47.86 164.60 166.64 128.28 67.69 30.59 21.04 84.37 97.58 56.32 57.09 131.34 84.47 133.63 80.19 73.51 78.82