Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DPP9 Gene 0 77.58 32.75 83.56 50.43 42.90 36.10 41.16 82.12 57.72 108.21 207.99 77.37 106.74 299.58 266.44 231.72 198.45 98.48 74.93 50.53 153.04 99.04 87.94 2 262959 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 357909 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 381797 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 262960 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.06 0.00 1.66 0.00 0.00 0.85 15.47 4.53 2.67 0.00 0.00 0.00 0.10 0.00 0.00 7 ER1b ExonRegion 1 13.44 7.73 13.30 2.96 5.86 12.65 13.41 9.75 10.25 17.90 50.53 2.56 10.60 46.92 99.66 46.20 51.99 26.95 14.93 14.67 42.13 15.62 21.34 8 E1a_E2a KnownJunction 0 7.33 5.79 7.01 4.59 3.40 0.00 2.25 9.49 14.93 22.67 82.55 17.56 6.33 35.38 28.43 30.25 69.94 26.86 4.52 2.75 91.18 5.08 0.00 9 ER2a ExonRegion 1 6.91 7.33 15.10 9.33 3.28 2.08 5.02 20.06 14.10 42.65 141.83 26.79 12.39 90.89 84.30 46.77 115.47 25.45 17.61 14.25 130.98 23.63 30.20 10 E2a_E3a KnownJunction 1 3.63 11.71 31.58 19.84 8.49 4.60 2.25 32.53 20.66 56.92 167.99 18.76 27.27 193.60 145.25 83.48 155.49 45.14 34.73 28.25 123.99 46.05 71.36 11 ER3a ExonRegion 0 9.09 10.61 39.94 19.75 15.79 9.89 10.08 43.12 35.85 65.54 172.77 50.15 71.90 212.31 217.50 162.39 154.67 68.94 70.15 57.66 108.03 66.60 80.35 12 E3a_E4a KnownJunction 1 10.52 15.26 47.78 25.77 15.70 27.94 16.16 52.66 36.78 62.21 135.35 111.94 188.95 165.99 230.05 207.64 130.06 115.16 97.70 39.05 85.19 104.77 74.10 13 ER4a ExonRegion 0 14.82 10.17 40.51 22.63 28.54 50.46 36.27 43.11 34.47 57.52 148.07 96.43 123.79 203.36 281.25 200.66 134.44 79.51 84.65 38.75 87.28 79.99 54.73 14 E4_Da KnownBoundary 0 20.37 14.47 38.20 28.97 42.95 84.10 55.87 52.29 35.18 66.21 144.09 81.33 93.83 263.05 357.75 219.94 161.10 84.56 66.45 45.76 92.11 88.54 48.32 15 E4a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER4b ExonRegion 0 36.21 16.28 54.84 22.06 22.45 29.13 29.38 62.21 47.01 90.58 214.67 77.58 116.41 293.82 272.55 200.11 163.53 87.20 69.32 45.56 117.58 98.50 69.38 17 E4b_E5a KnownJunction 0 39.93 28.35 72.71 45.38 30.48 49.40 41.16 71.72 47.89 116.47 258.43 104.88 121.58 274.36 252.06 220.97 204.49 103.30 76.43 66.41 138.20 120.51 88.18 18 I4_AR1 ActiveIntronRegion 0 22.99 6.09 11.44 8.89 10.78 6.13 9.07 21.34 11.12 20.51 13.94 8.54 12.52 16.83 38.65 33.22 17.47 22.37 10.74 14.95 12.67 4.01 13.98 19 I4_AR2 ActiveIntronRegion 0 4.23 2.03 4.90 5.06 2.68 4.19 3.22 8.64 5.65 24.08 6.35 0.00 0.00 12.99 30.26 28.87 17.92 34.05 11.83 20.97 4.41 0.00 10.91 20 I4_AR3 ActiveIntronRegion 0 14.55 1.17 7.72 7.39 7.86 2.97 5.52 8.64 6.28 26.77 10.69 2.21 3.69 14.58 15.19 34.84 20.93 28.19 9.76 16.70 8.77 2.93 26.68 21 I4_AR4 ActiveIntronRegion 0 14.11 6.10 8.99 5.45 7.67 5.01 6.53 5.99 7.99 19.27 9.41 8.66 6.25 8.99 22.63 17.04 20.03 13.80 3.19 20.71 12.63 4.44 18.60 22 I4_AR5 ActiveIntronRegion 0 11.38 6.10 9.80 4.60 4.01 4.81 5.96 6.91 9.57 19.93 9.42 4.87 9.38 8.73 25.02 11.89 24.34 16.17 1.19 28.72 15.43 5.99 6.24 23 I4_SR2 SilentIntronRegion 0 16.71 4.55 7.08 6.88 9.51 3.62 9.83 12.59 7.55 15.67 8.18 7.80 12.07 11.41 20.71 20.27 13.48 13.59 8.15 12.62 8.70 3.34 12.29 24 E5_Aa NovelBoundary 0 10.96 9.47 13.51 15.28 10.87 15.79 17.58 16.96 9.37 11.07 2.58 0.00 0.00 2.35 33.25 35.38 22.53 8.50 4.24 13.74 14.15 2.76 16.39 25 ER5a ExonRegion 0 59.71 31.62 68.01 37.46 27.70 45.75 37.67 91.65 72.94 147.53 289.76 100.73 140.08 377.24 313.90 287.82 288.38 122.44 118.25 53.53 194.88 139.82 115.33 26 E5a_E6a KnownJunction 0 82.01 28.48 114.57 53.51 14.94 43.84 35.73 101.90 100.09 172.83 289.60 191.76 315.08 477.84 464.92 483.21 295.18 174.85 180.05 91.27 192.93 138.45 130.86 27 E6_Aa NovelBoundary 0 20.82 2.50 61.80 10.12 3.23 4.32 15.55 29.66 29.69 60.95 57.33 56.57 48.05 76.93 36.22 80.24 52.92 44.11 28.24 31.26 53.07 41.64 25.87 28 ER6a ExonRegion 0 60.81 17.34 96.57 39.09 27.89 36.16 32.22 111.44 79.40 147.23 258.12 112.84 131.26 409.59 301.43 333.37 267.54 113.02 79.51 63.04 165.79 151.22 113.85 29 E6_Ab KnownBoundary 1 58.45 26.38 74.27 48.41 30.14 24.30 43.99 113.98 63.11 144.25 301.66 62.27 48.21 315.03 265.04 203.19 317.62 85.27 32.38 45.64 189.22 122.96 77.60 30 ER6b ExonRegion 0 44.29 25.59 68.94 26.42 27.20 26.48 33.62 69.64 65.73 119.36 206.32 53.08 80.66 271.79 201.88 173.68 194.62 73.22 39.35 41.73 145.42 89.18 74.18 31 E6a_E7a KnownJunction 0 82.53 36.18 99.79 34.89 39.73 60.76 44.74 113.04 90.13 144.68 278.39 119.29 65.58 363.06 291.61 258.99 197.38 129.83 81.88 52.86 201.39 111.87 125.48 32 ER7a ExonRegion 0 62.86 32.24 72.43 36.81 38.60 45.41 57.96 77.34 58.78 122.11 220.60 65.71 89.19 359.29 271.69 286.94 216.82 104.64 74.56 49.97 185.18 116.06 96.82 33 E7a_E8a KnownJunction 0 77.35 30.19 48.43 24.87 28.18 21.75 47.03 62.19 35.79 95.33 181.94 58.22 84.57 337.04 243.65 258.22 208.70 92.73 30.02 53.50 127.38 83.95 85.96 34 ER8a ExonRegion 0 68.34 40.56 75.55 34.10 31.33 26.08 49.45 95.82 52.18 109.52 232.86 73.83 93.80 347.06 308.58 234.67 225.16 79.89 74.63 76.61 166.61 88.49 87.33 35 E8a_E9a KnownJunction 0 79.57 43.35 101.03 53.44 36.33 45.26 33.03 117.31 62.01 132.64 281.54 67.67 72.40 398.32 341.93 293.09 230.39 101.44 116.14 66.79 196.39 77.58 85.62 36 ER9a ExonRegion 0 114.23 39.19 94.61 42.83 49.33 53.36 56.26 126.81 79.96 149.91 365.20 95.68 129.32 459.15 396.19 379.65 324.08 141.56 114.33 102.14 233.80 150.42 121.77 37 E9a_E10a KnownJunction 0 203.52 46.04 110.08 60.57 93.80 92.79 83.29 131.93 92.10 184.11 367.67 128.14 208.43 382.37 504.11 406.22 220.94 180.78 145.32 85.65 256.93 264.90 141.53 38 E9a_E11a NovelJunction 0 0.00 0.00 2.48 0.00 0.00 0.00 5.48 0.00 0.00 2.53 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 2.97 7.65 0.00 39 ER10a ExonRegion 0 105.93 40.80 111.13 53.81 54.33 54.42 67.44 128.32 95.26 199.75 360.45 94.97 170.88 466.07 448.99 349.13 333.71 157.06 100.96 82.15 250.01 183.65 114.48 40 E10a_E11a KnownJunction 0 61.20 40.58 116.23 65.96 63.33 45.09 64.48 145.40 97.94 203.37 277.91 106.23 165.90 484.02 424.87 372.04 393.73 176.22 114.17 111.98 219.49 143.41 127.36 41 ER11a ExonRegion 0 62.49 36.16 94.17 53.37 53.25 41.07 49.97 101.59 76.26 160.26 292.21 125.90 178.17 461.96 364.84 353.15 292.96 166.70 105.72 89.82 205.16 164.04 122.44 42 E11a_E12a KnownJunction 0 86.16 49.00 97.90 54.61 45.93 40.15 43.28 126.06 72.45 161.55 300.92 173.76 225.31 489.67 408.56 395.11 301.36 242.34 100.33 93.32 185.08 259.51 173.80 43 E11a_E13a NovelJunction 0 6.74 0.00 5.59 6.56 0.00 8.40 0.00 8.34 1.13 11.82 15.58 0.00 0.00 19.48 15.58 33.15 8.23 10.11 4.80 5.75 7.54 2.51 3.67 44 ER12a ExonRegion 0 88.03 36.48 79.24 40.15 59.53 37.20 50.32 101.56 68.67 132.41 326.44 167.05 249.52 494.66 447.59 338.64 324.23 152.60 135.99 81.85 243.34 171.59 128.45 45 E12a_E13a KnownJunction 0 176.85 51.70 110.43 75.85 80.81 76.32 111.56 153.78 101.62 188.84 560.62 204.97 171.42 588.85 367.64 477.23 467.04 207.14 223.07 103.42 352.93 248.12 206.15 46 ER13a ExonRegion 0 146.01 48.08 140.18 70.94 80.50 53.96 72.83 153.13 103.95 189.18 442.48 222.45 294.95 527.35 446.85 436.57 366.44 178.55 154.17 86.32 302.81 174.82 162.79 47 E13_Da NovelBoundary 0 18.23 3.16 25.55 8.79 23.60 0.00 3.97 10.68 7.29 13.24 60.38 0.00 18.34 58.92 89.87 68.36 27.86 26.99 12.89 8.37 0.00 17.45 15.19 48 E13a_E14a KnownJunction 0 226.93 39.99 173.09 90.76 141.26 59.40 91.46 170.13 136.92 252.07 500.81 231.68 336.50 790.57 693.00 731.43 424.03 192.47 266.55 115.37 363.31 250.51 256.94 49 I13_AR1 ActiveIntronRegion 1 11.95 1.65 8.87 3.28 4.33 3.46 8.57 11.12 4.97 9.68 54.81 11.77 5.21 40.65 57.52 44.91 32.07 15.87 14.61 4.57 11.30 11.24 15.06 50 ER14a ExonRegion 0 112.33 29.87 157.41 100.84 67.36 49.86 46.01 153.66 105.25 189.94 425.72 229.84 284.33 507.76 340.32 397.37 371.31 158.44 138.13 93.70 266.37 157.85 164.56 51 E14_Da NovelBoundary 0 0.00 6.18 5.77 8.29 0.00 2.90 7.91 11.21 4.17 13.27 0.00 6.30 18.67 4.94 47.22 40.42 0.00 41.70 4.80 25.82 12.29 2.57 8.19 52 E14a_E15a KnownJunction 1 70.01 31.64 135.95 106.28 51.61 24.64 52.29 133.24 92.77 159.94 262.96 240.53 436.50 333.04 292.97 399.47 274.71 135.76 69.37 69.99 166.06 121.24 176.36 53 ER15a ExonRegion 0 50.93 39.09 108.99 66.51 48.13 39.42 45.78 110.10 74.03 145.51 242.85 134.84 166.20 372.29 324.66 323.57 247.74 147.64 90.13 60.05 176.18 136.23 122.78 54 E15a_E16a KnownJunction 0 48.97 38.61 70.25 65.16 22.16 50.43 26.19 68.84 41.84 106.43 187.10 144.95 109.57 320.68 296.31 215.76 228.70 94.26 89.60 51.58 162.72 86.71 79.30 55 ER16a ExonRegion 0 45.47 23.42 59.64 44.23 34.98 40.68 30.17 73.60 62.93 121.39 183.97 90.35 156.46 353.90 339.15 248.92 218.95 114.02 97.36 44.98 185.13 95.58 104.10 56 E16a_E17a KnownJunction 0 67.86 32.49 73.21 58.77 57.30 23.68 30.47 92.75 66.90 130.04 186.63 69.17 59.74 378.72 275.17 224.73 241.79 103.51 107.30 42.50 204.79 66.56 118.48 57 I16_AR1 ActiveIntronRegion 0 16.80 3.61 8.68 9.30 3.06 3.00 9.30 9.71 7.20 6.02 5.96 3.51 3.52 6.40 11.98 18.99 15.40 17.94 7.33 7.95 7.09 4.19 7.17 58 ER17a ExonRegion 0 66.86 21.95 59.00 41.69 36.34 25.67 29.36 61.76 53.02 112.85 148.66 57.17 85.61 286.09 205.04 176.84 164.21 106.46 67.96 31.67 146.40 70.13 68.09 59 E17_Da NovelBoundary 0 63.42 14.93 11.80 10.72 31.24 6.81 18.90 24.23 13.57 21.60 36.80 0.00 41.56 44.97 14.34 56.91 31.32 20.15 8.19 17.51 23.17 16.66 26.97 60 E17a_E18a KnownJunction 0 51.27 31.51 87.05 48.98 47.79 49.35 36.88 78.25 60.44 118.19 192.79 47.12 93.50 355.88 177.27 142.53 188.59 121.96 77.56 23.39 155.80 46.78 51.82 61 E18_Aa NovelBoundary 0 12.52 6.58 26.40 3.33 4.33 4.88 8.08 30.52 17.16 32.83 11.79 0.00 0.00 28.55 14.09 38.79 11.41 35.73 4.42 5.62 17.17 6.25 4.35 62 ER18a ExonRegion 0 55.78 30.99 64.07 33.70 27.47 29.67 33.14 57.32 49.65 87.75 137.13 64.29 60.30 224.22 163.14 149.72 144.43 80.65 51.18 19.84 125.96 61.84 61.49 63 E18a_E19a KnownJunction 0 65.12 44.27 77.76 55.60 55.77 58.32 53.66 100.67 63.74 140.86 256.12 108.94 129.21 311.14 332.41 233.02 267.98 136.55 82.92 38.16 212.76 91.30 88.86 64 ER19a ExonRegion 0 62.39 35.53 103.44 52.32 46.69 38.73 38.44 92.58 65.07 128.09 230.24 67.63 63.82 309.36 278.75 237.05 218.59 131.90 68.60 39.42 181.06 103.02 98.91 65 E19a_E20a KnownJunction 1 87.42 32.69 138.11 68.62 50.34 40.77 26.63 89.87 54.22 141.16 275.86 48.32 38.15 285.07 338.59 259.25 258.81 94.76 64.66 33.30 181.07 138.27 83.66 66 ER20a ExonRegion 0 89.89 40.19 168.68 98.23 48.61 32.69 47.47 127.63 75.23 153.29 255.87 55.50 68.22 306.52 332.95 297.90 247.11 129.33 80.21 58.89 194.48 124.47 94.55 67 E20a_E21a KnownJunction 0 118.98 49.27 237.04 149.46 40.75 44.58 59.66 170.79 121.18 190.18 238.64 49.67 108.60 323.45 425.99 327.26 287.24 132.86 53.46 87.50 228.02 105.63 79.39 68 ER21a ExonRegion 0 109.11 42.56 236.46 152.64 88.75 60.73 50.93 165.93 104.17 191.70 351.24 88.75 123.41 415.64 353.67 355.57 278.31 154.20 107.85 75.95 220.51 151.61 137.81 69 E21a_E22a KnownJunction 0 175.14 47.75 208.98 115.24 56.28 57.75 39.92 141.38 103.62 176.48 263.22 112.54 151.94 386.96 371.72 422.37 254.79 171.95 151.82 98.50 217.39 124.61 147.59 70 E22_Aa NovelBoundary 0 21.63 2.89 20.70 11.15 3.23 37.76 9.49 16.27 3.88 8.25 9.00 0.00 0.00 21.37 13.35 24.69 8.98 18.94 0.00 5.11 23.17 8.21 18.95 71 ER22a ExonRegion 0 125.86 39.65 139.23 110.33 58.47 32.78 25.70 136.40 78.51 140.26 257.50 73.39 126.63 429.82 382.05 329.29 221.12 146.22 94.59 63.91 194.06 131.87 121.41 72 ER22b ExonRegion 0 140.27 46.40 88.90 65.67 37.70 21.34 17.33 100.72 50.98 101.76 318.05 73.60 118.10 333.39 256.10 235.61 231.96 89.53 48.36 24.95 211.16 87.32 99.04 73 ER22c ExonRegion 0 99.55 39.02 72.23 53.38 47.16 36.58 43.71 62.75 43.65 73.16 127.00 44.66 64.63 206.89 198.38 164.78 131.59 63.14 52.89 37.67 100.86 67.89 65.95 74 ER22d ExonRegion 0 13.23 6.10 3.68 1.19 0.33 6.88 6.62 6.05 1.08 3.44 6.77 3.79 17.00 13.40 4.71 6.69 2.89 1.39 0.00 1.86 0.00 4.95 0.00