Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF317 Gene 0 96.32 126.53 65.10 58.88 73.30 50.94 60.55 74.18 53.52 96.19 131.71 96.07 81.87 149.30 98.05 141.88 127.76 98.28 78.07 77.87 73.66 78.60 67.68 2 419608 Transcript 0 1.31 0.86 4.01 0.54 0.46 1.62 3.45 3.57 1.24 1.54 2.61 5.53 0.00 0.02 1.95 1.09 1.04 3.94 0.00 1.15 0.26 1.70 0.00 3 360385 Transcript 0 10.82 5.72 11.24 1.53 3.40 0.00 14.88 3.98 8.45 8.84 30.69 12.15 19.80 22.43 14.59 35.20 56.10 15.79 4.24 5.88 4.88 17.57 8.19 4 457190 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 247956 Transcript 1 31.70 36.02 16.30 20.23 23.05 42.23 18.78 39.19 31.91 63.74 97.32 40.64 43.40 137.24 47.16 92.19 91.37 111.14 42.43 53.86 59.61 44.26 50.15 6 ER1a ExonRegion 1 29.60 26.52 7.41 8.10 18.84 27.30 30.26 10.27 9.72 29.51 61.21 3.20 3.57 64.34 25.65 132.78 88.27 70.91 47.37 33.32 50.96 25.81 90.24 7 E1a_E2a KnownJunction 1 3.48 8.81 4.67 15.62 0.00 2.16 4.15 10.31 16.93 48.75 168.88 0.00 13.47 99.77 32.88 42.98 183.54 36.23 37.55 52.80 106.13 21.19 16.13 8 E1a_E3a KnownJunction 0 0.00 0.00 3.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER2a ExonRegion 1 9.03 17.50 22.21 26.03 13.42 19.53 20.29 40.09 34.69 56.42 98.78 38.19 12.15 125.20 70.42 120.87 117.34 65.81 62.32 77.25 59.10 63.97 90.96 10 E2a_E3a KnownJunction 0 3.78 27.76 12.27 25.70 62.39 56.10 31.27 29.78 35.07 61.68 64.81 30.76 6.82 52.27 38.20 65.03 100.98 99.78 26.82 65.39 50.35 39.01 42.85 11 ER3a ExonRegion 1 15.74 60.22 27.38 29.63 55.10 54.21 62.64 33.62 40.35 70.30 117.43 20.51 39.16 120.86 56.33 70.90 122.69 75.81 52.17 77.45 71.03 52.09 38.07 12 E3a_E4a KnownJunction 0 25.34 90.84 14.96 31.90 19.10 5.45 12.32 34.30 30.32 68.55 106.76 24.76 19.48 137.91 57.98 105.61 100.98 54.97 45.18 53.95 44.05 19.59 42.08 13 I3 Intron 0 15.18 6.99 9.69 2.99 8.15 3.06 8.20 10.12 5.61 7.39 17.66 7.11 7.56 20.67 8.30 28.62 32.11 16.16 13.46 12.96 10.39 12.69 12.99 14 I3_AR1 ActiveIntronRegion 0 15.24 7.02 9.73 3.01 8.18 3.08 8.23 10.16 5.63 7.42 17.73 7.13 7.59 20.75 8.33 28.73 32.23 16.23 13.51 13.01 10.43 12.74 13.04 15 E4_Aa NovelBoundary 0 29.78 11.58 12.18 8.49 4.33 14.65 11.26 4.39 7.09 1.67 18.85 5.40 19.80 26.55 4.45 55.80 25.06 14.76 17.41 23.52 5.81 12.74 27.57 16 ER4a ExonRegion 1 41.53 62.14 27.67 32.19 28.78 23.92 22.10 33.80 34.72 67.16 113.57 32.33 35.54 130.25 63.57 119.28 134.09 66.77 45.94 70.40 71.65 46.07 45.75 17 E4_Da KnownBoundary 1 63.05 42.16 40.63 40.62 60.36 40.94 40.50 40.70 45.25 71.00 129.19 59.57 27.11 151.33 43.88 138.43 156.24 90.91 59.20 92.87 83.58 75.26 54.03 18 E4a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER4b ExonRegion 0 55.65 24.33 37.12 37.99 32.89 34.69 38.69 56.95 45.11 73.89 142.52 55.86 56.74 181.98 67.08 151.76 177.73 112.42 75.52 81.86 89.36 75.44 54.61 20 E4_Db KnownBoundary 0 9.41 5.99 9.73 6.93 3.74 14.20 14.79 14.95 7.99 5.00 8.90 12.60 0.00 0.00 15.08 4.10 4.77 15.84 3.95 11.19 2.47 8.14 0.00 21 E4b_E5a KnownJunction 0 53.12 34.20 21.67 30.70 26.15 54.12 18.28 45.39 32.29 72.18 99.97 52.37 68.34 157.99 53.40 93.57 95.00 88.67 44.80 59.70 56.71 69.38 43.54 22 E4b_E6a KnownJunction 0 10.82 5.72 11.24 1.53 3.40 0.00 14.88 3.98 8.45 8.84 30.69 12.15 19.80 22.43 14.59 35.20 56.10 15.79 4.24 5.88 4.88 17.57 8.19 23 ER4c ExonRegion 0 2.62 1.71 4.35 1.08 0.92 3.23 6.90 7.14 2.47 3.08 2.65 11.05 0.00 0.04 3.89 2.19 2.08 7.88 0.00 2.30 0.52 3.40 0.00 24 I4_SR1 SilentIntronRegion 0 18.86 9.59 1.39 4.13 3.71 10.78 3.42 16.69 2.53 7.26 8.40 6.78 5.88 4.27 5.67 7.90 7.78 9.27 7.27 6.80 7.20 0.44 9.29 25 E5_Aa NovelBoundary 0 36.45 14.80 11.03 9.39 4.33 8.12 18.99 5.67 7.47 5.53 14.16 5.85 0.00 12.07 5.93 8.72 4.68 34.12 8.94 6.14 10.81 2.45 7.77 26 ER5a ExonRegion 0 22.20 23.85 13.67 15.84 22.80 22.16 17.25 39.29 27.66 56.51 98.70 50.19 35.71 116.48 45.18 93.13 79.43 118.62 43.43 49.80 64.78 29.30 42.37 27 E5a_E6a KnownJunction 0 19.78 49.99 13.57 14.15 20.20 50.43 20.80 32.90 35.76 62.53 93.29 19.36 26.13 137.27 42.90 89.89 99.67 126.14 39.06 52.09 57.33 34.11 64.53 28 ER6a ExonRegion 0 39.68 42.16 25.69 21.10 23.72 43.37 43.40 63.15 47.28 67.51 122.71 63.28 72.15 169.45 61.51 139.54 141.83 129.68 54.52 64.82 78.27 54.41 58.15 29 E6a_E7a KnownJunction 0 32.52 37.49 48.85 36.09 15.37 62.07 40.36 58.78 61.28 83.92 121.45 43.81 60.71 145.15 53.65 146.29 99.86 110.80 38.78 61.10 78.77 68.28 58.90 30 ER6b ExonRegion 1 23.28 31.83 39.48 30.16 14.08 55.17 35.40 67.79 56.06 72.35 108.24 83.39 63.83 182.18 53.36 153.90 103.33 96.73 58.31 58.83 83.93 64.05 60.52 31 ER7a ExonRegion 0 113.25 149.12 75.91 67.97 84.64 55.59 67.12 83.88 59.23 106.50 140.41 111.64 94.61 157.91 109.90 149.16 132.13 101.96 84.50 82.62 76.22 86.71 69.11