Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF557 Gene 0 29.69 36.98 28.17 30.11 39.18 14.61 39.45 23.95 18.51 32.56 28.97 43.53 52.31 40.15 41.32 43.97 35.17 30.48 27.58 35.26 13.61 15.19 22.13 2 414706 Transcript 0 9.93 12.89 1.48 2.06 3.48 16.69 12.28 4.85 0.00 9.05 2.47 0.00 0.00 7.42 0.00 21.28 3.74 11.36 0.00 0.00 0.00 2.82 8.54 3 439035 Transcript 0 0.00 3.22 4.11 2.06 7.39 4.43 15.24 6.49 1.59 5.78 5.37 0.00 0.00 5.12 13.35 7.95 12.72 7.67 0.00 3.26 0.00 5.45 3.50 4 252840 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 ER1a ExonRegion 0 11.84 12.80 2.77 3.70 10.77 5.34 12.62 2.86 2.36 5.18 10.48 0.00 1.06 12.42 14.41 16.45 13.18 9.31 11.25 7.89 7.14 6.53 6.26 6 E1_Da NovelBoundary 0 40.45 40.19 14.81 21.74 20.37 18.97 45.53 20.78 9.49 25.41 19.16 5.25 6.17 21.84 23.61 49.39 28.80 29.43 38.31 35.03 14.52 17.76 28.26 7 E1a_E2a KnownJunction 0 9.93 12.89 1.48 2.06 3.48 16.69 12.28 4.85 0.00 9.05 2.47 0.00 0.00 7.42 0.00 21.28 3.74 11.36 0.00 0.00 0.00 2.82 8.54 8 E1b_E2a KnownJunction 0 26.52 64.73 25.87 37.69 81.49 18.11 74.55 32.78 13.69 45.34 33.06 5.85 0.00 44.32 47.72 108.52 53.20 80.67 38.02 58.36 27.49 21.49 35.77 9 ER1b ExonRegion 0 33.69 58.97 20.32 29.30 61.99 21.55 65.32 24.92 11.42 36.41 34.15 5.41 8.60 47.64 55.61 91.64 52.26 68.37 48.58 55.50 28.65 24.31 31.57 10 ER2a ExonRegion 0 17.12 19.16 21.50 22.83 22.57 8.87 24.16 23.54 15.80 36.38 44.96 29.46 22.94 30.45 26.55 35.73 60.96 53.34 17.66 34.16 27.74 14.36 15.80 11 E2a_E3a KnownJunction 0 3.70 0.00 18.89 23.01 4.33 2.67 0.00 17.21 9.95 34.68 44.70 12.60 0.00 48.97 49.69 22.47 61.06 27.94 12.99 42.44 28.23 17.08 7.85 12 Ix Intron 0 11.43 2.43 6.54 6.39 7.26 1.89 3.23 5.66 2.70 5.70 1.47 3.95 4.27 1.51 6.58 8.06 6.00 4.04 4.06 4.21 1.85 1.41 5.02 13 Ix_SR1 SilentIntronRegion 0 11.44 2.43 6.55 6.40 7.27 1.89 3.24 5.67 2.70 5.71 1.47 3.96 4.28 1.51 6.59 8.07 6.01 4.04 4.07 4.22 1.86 1.41 5.02 14 ER3a ExonRegion 0 4.87 3.97 14.11 21.81 8.66 2.38 6.73 21.59 15.07 31.54 25.51 3.15 3.97 43.70 47.92 69.28 35.41 42.20 19.14 41.22 16.69 14.53 25.95 15 E3a_E4a KnownJunction 0 13.85 14.67 5.88 10.69 3.40 0.00 18.72 12.16 9.11 15.20 5.16 0.00 7.79 9.36 22.00 10.60 3.74 11.19 4.80 22.88 2.35 3.00 3.76 16 E3a_E4b KnownJunction 0 0.00 3.22 4.11 2.06 7.39 4.43 15.24 6.49 1.59 5.78 5.37 0.00 0.00 5.12 13.35 7.95 12.72 7.67 0.00 3.26 0.00 5.45 3.50 17 E4_Aa NovelBoundary 0 2.96 3.35 3.49 9.99 0.00 2.78 1.77 9.00 3.59 6.15 0.00 0.00 6.82 2.47 0.00 4.36 8.88 1.95 17.79 6.26 0.00 3.00 3.93 18 E4_Ab NovelBoundary 0 24.08 20.59 16.26 24.24 14.26 12.61 46.86 24.11 16.64 48.46 11.00 11.55 6.82 16.89 10.51 35.63 52.92 53.77 0.00 20.01 11.92 8.63 23.82 19 ER4a ExonRegion 0 9.72 12.11 6.41 9.35 9.12 6.17 27.02 12.10 12.13 18.61 9.31 6.30 2.98 18.31 15.43 20.53 37.96 13.86 4.20 19.34 6.81 5.68 6.14 20 ER4b ExonRegion 1 13.39 45.53 15.22 18.59 35.82 24.20 60.35 20.04 12.72 25.52 43.25 5.43 14.77 56.65 29.14 44.18 60.99 34.53 9.94 26.77 17.10 17.20 8.63 21 E4a_E5a KnownJunction 0 14.30 56.96 23.86 20.58 57.30 34.36 53.97 15.81 10.97 20.07 52.64 0.00 21.43 65.22 38.94 36.83 52.08 43.82 17.32 26.21 32.12 14.39 14.26 22 ER5a ExonRegion 0 22.03 38.97 19.42 22.13 25.60 10.18 32.09 24.05 17.87 35.75 54.21 11.73 15.84 55.71 36.48 57.66 71.48 45.04 21.42 40.02 26.22 15.24 27.33 23 E5_Da NovelBoundary 0 0.00 3.35 13.16 11.89 12.39 0.00 0.00 13.51 9.20 13.27 2.47 0.00 0.00 0.00 0.00 0.00 3.93 6.76 8.75 3.20 0.00 0.00 4.35 24 E5a_E6a KnownJunction 0 31.26 38.09 23.74 30.37 22.41 11.58 21.46 27.23 16.03 34.95 75.70 25.21 33.76 111.78 42.65 83.40 58.16 49.37 12.61 34.07 28.17 39.43 11.78 25 ER6a ExonRegion 0 54.28 39.91 20.23 24.01 25.36 6.42 22.82 34.08 18.96 45.14 65.52 34.82 35.13 66.34 54.94 84.02 59.97 51.20 34.31 49.07 32.21 32.86 24.44 26 E6_Da NovelBoundary 0 10.59 11.91 3.67 14.75 8.66 0.00 12.06 6.45 4.77 9.83 10.48 6.90 26.30 0.00 4.45 8.72 13.09 22.88 12.71 20.71 19.83 3.12 4.10 27 E6a_E7a KnownJunction 0 48.30 15.85 17.74 23.94 15.11 4.60 36.92 28.46 24.86 42.31 46.91 51.17 46.26 45.68 55.75 60.75 62.37 31.84 44.61 46.28 15.01 16.29 60.52 28 Ix Intron 0 13.65 20.98 9.06 17.93 11.42 1.46 14.19 11.77 6.39 12.21 13.23 9.55 20.48 3.69 6.13 6.19 5.57 11.58 12.96 14.36 8.52 4.13 5.24 29 Ix_SR1 SilentIntronRegion 0 12.44 17.44 10.07 20.09 11.12 1.93 14.69 12.44 7.75 13.10 14.35 10.43 21.42 4.30 6.78 7.98 6.23 13.12 16.32 16.05 11.00 4.37 5.34 30 Ix_AR1 ActiveIntronRegion 0 19.75 46.09 11.44 21.58 26.76 3.67 21.85 24.20 1.24 17.97 17.72 14.43 26.58 4.87 8.70 11.89 6.60 11.39 15.93 23.40 0.00 5.90 8.81 31 Ix_AR2 ActiveIntronRegion 0 16.16 27.90 6.82 13.25 11.53 0.32 12.91 9.89 3.71 10.16 10.75 7.54 18.43 2.33 4.66 2.09 4.14 8.36 5.60 10.41 3.56 3.60 4.94 32 E7_Aa NovelBoundary 0 38.30 26.44 12.57 8.19 11.97 2.56 20.80 9.00 1.79 10.72 13.90 12.45 21.59 7.30 0.00 6.92 18.33 3.65 3.86 5.94 0.00 3.12 0.00 33 ER7a ExonRegion 0 63.37 40.26 18.11 21.79 31.98 15.07 47.74 31.84 22.19 43.46 59.24 77.83 52.55 63.38 51.07 85.15 58.82 37.71 41.03 53.47 15.32 28.24 40.23 34 E7_Da NovelBoundary 0 27.26 8.35 14.84 30.10 12.56 5.28 13.51 6.57 13.02 17.41 7.84 36.31 29.06 7.36 14.22 20.34 8.13 9.66 20.52 18.79 8.22 12.12 12.89 35 E7a_E8a KnownJunction 0 51.56 24.34 28.50 11.22 61.80 29.19 79.67 38.03 23.90 41.58 76.76 80.58 117.69 63.57 51.18 99.29 63.30 21.43 35.58 55.61 17.24 35.15 29.02 36 Ix Intron 0 24.59 26.23 10.97 12.60 15.54 2.71 18.12 9.63 8.70 9.76 5.90 21.51 25.80 4.14 4.94 6.15 5.52 3.98 5.96 6.91 2.39 4.31 5.78 37 Ix_AR1 ActiveIntronRegion 0 6.83 7.88 3.54 1.31 5.18 0.00 13.68 1.66 0.00 3.30 4.99 9.70 17.63 4.93 1.32 3.84 10.65 0.00 2.06 4.12 2.85 2.69 5.69 38 Ix_SR1 SilentIntronRegion 0 27.91 29.66 12.36 14.70 17.49 3.21 19.00 11.11 10.31 10.97 6.09 23.75 27.40 4.01 5.62 6.59 4.62 4.72 6.69 7.45 2.31 4.62 5.83 39 E8_Aa NovelBoundary 0 35.19 6.64 16.11 14.88 16.13 4.54 38.95 8.95 10.16 11.98 22.06 50.72 86.20 9.95 0.00 15.47 0.00 10.99 0.00 35.47 0.00 22.29 7.85 40 ER8a ExonRegion 0 30.99 39.23 30.91 32.68 42.66 15.68 42.11 25.04 19.66 33.79 27.92 48.39 58.97 40.49 42.98 43.42 33.85 30.13 29.00 36.23 12.93 15.18 22.86