Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KDM4B Gene 0 37.16 78.18 96.08 60.61 51.19 58.77 47.34 90.32 63.76 127.12 100.01 41.87 39.42 190.18 153.30 117.59 151.98 176.37 107.53 118.11 91.73 51.08 62.26 2 381759 Transcript 0 1.11 1.14 1.11 0.00 2.25 1.72 2.50 0.77 0.83 1.10 0.74 1.33 0.29 2.72 3.76 2.61 1.92 2.21 2.34 2.31 3.17 0.63 4.03 3 159111 Transcript 0 28.68 52.92 102.31 59.68 36.93 56.39 37.29 93.06 73.96 146.26 114.43 34.50 38.83 262.88 194.72 155.87 188.45 221.23 112.39 139.86 103.74 49.52 62.13 4 ER1a ExonRegion 0 15.01 10.32 6.46 3.82 20.82 26.50 24.50 11.81 9.88 20.89 32.32 3.01 2.54 23.23 20.41 31.28 39.28 68.35 60.12 23.66 29.77 13.75 45.77 5 E1a_E2a KnownJunction 0 3.78 3.35 4.29 13.22 0.00 4.77 6.67 10.72 6.60 15.58 14.79 17.11 20.29 16.95 13.35 3.67 16.18 29.10 9.22 18.73 9.33 9.00 12.29 6 I1_AR4 ActiveIntronRegion 0 3.11 9.31 6.27 2.32 6.12 0.60 9.09 6.32 4.51 5.59 2.21 6.45 6.94 1.89 5.44 6.32 9.71 7.97 7.29 16.35 4.68 0.68 12.48 7 ER2a ExonRegion 1 14.99 7.33 20.46 10.46 5.22 21.39 5.68 39.92 30.22 64.46 89.08 27.28 18.76 38.63 47.12 25.39 100.18 59.13 54.42 58.45 71.18 16.34 22.25 8 E2a_E3a KnownJunction 1 10.89 9.47 44.85 17.91 3.40 14.54 4.37 55.98 33.22 88.56 106.34 54.47 12.99 59.63 85.91 33.84 102.85 90.91 86.03 110.19 70.06 46.05 16.73 9 E2a_E4a NovelJunction 0 3.11 3.35 5.09 4.13 0.00 0.00 2.25 0.00 4.17 6.98 2.47 0.00 6.82 7.95 15.08 0.00 0.00 18.16 20.71 14.76 5.25 0.00 0.00 10 ER3a ExonRegion 0 6.27 22.80 38.39 21.40 40.93 43.15 34.61 60.16 57.79 100.23 106.48 43.92 38.25 82.85 84.05 62.49 114.80 155.06 118.47 95.42 101.81 39.49 74.11 11 E3a_E4a KnownJunction 0 6.15 43.54 47.93 24.54 25.72 32.20 67.83 65.31 61.57 114.54 91.81 37.06 41.56 80.52 113.60 51.70 119.96 187.62 161.23 109.23 103.48 78.99 38.67 12 E3a_E6a NovelJunction 0 0.00 0.00 4.58 0.00 0.00 0.00 0.00 0.00 0.00 1.56 4.84 0.00 0.00 3.00 0.00 0.00 9.07 4.52 0.00 3.26 0.00 8.51 0.00 13 ER4a ExonRegion 0 14.91 41.33 56.99 34.55 18.82 38.54 26.25 75.61 76.51 119.18 112.12 36.55 42.26 130.79 120.76 66.67 154.00 172.70 100.39 127.65 119.95 51.40 47.25 14 E4a_E5a KnownJunction 0 40.16 43.54 98.52 66.72 22.24 45.09 20.40 101.37 94.15 165.60 146.46 50.87 38.80 165.76 128.81 120.31 236.65 330.96 121.23 132.82 132.33 45.13 94.84 15 ER5a ExonRegion 0 24.26 44.69 90.25 60.35 38.32 46.10 49.73 112.82 83.43 179.07 160.13 61.14 52.24 190.38 123.34 113.64 194.84 334.75 168.52 171.88 159.32 57.58 77.20 16 E5a_E6a KnownJunction 0 34.38 90.71 114.90 64.86 43.97 56.67 65.89 106.87 77.46 162.25 179.05 68.72 122.88 183.12 157.86 135.52 192.89 266.92 137.23 210.22 170.13 68.15 55.57 17 ER6a ExonRegion 0 17.04 53.71 102.46 55.54 29.89 50.51 45.06 78.51 78.56 170.36 153.07 65.39 66.00 183.09 135.34 125.46 195.50 304.92 175.54 175.30 148.82 53.84 88.10 18 E6a_E7a KnownJunction 0 13.34 103.60 110.23 55.37 42.61 60.19 61.47 59.89 72.97 143.85 132.98 60.32 59.41 156.81 135.24 140.39 131.37 303.65 137.32 142.73 104.53 51.93 85.45 19 ER7a ExonRegion 0 14.27 61.58 81.07 40.91 15.47 31.03 45.81 46.81 54.27 128.68 98.58 47.36 67.72 115.47 123.48 80.60 95.79 194.49 117.29 102.34 114.77 50.71 51.57 20 E7a_E8a KnownJunction 0 16.45 61.83 96.21 50.81 7.81 38.39 38.69 68.06 63.37 159.72 107.29 45.01 64.28 66.46 115.58 49.82 103.79 217.26 129.70 97.54 125.72 63.50 34.66 21 ER8a ExonRegion 0 18.54 58.25 79.96 42.90 27.27 49.05 49.88 71.43 60.60 137.89 135.08 49.16 60.38 152.81 109.86 95.94 139.56 242.84 173.39 148.28 123.56 67.13 74.12 22 E8a_E9a KnownJunction 0 10.37 53.41 81.49 42.82 11.12 67.23 20.49 94.35 59.29 136.57 132.98 50.42 53.57 144.09 146.61 106.38 126.04 275.83 201.23 168.74 109.41 61.05 80.07 23 I8 Intron 0 12.53 4.69 7.78 7.87 6.00 5.51 10.75 12.56 12.35 10.91 8.82 5.62 5.09 13.22 15.25 10.93 15.45 17.99 18.77 16.24 17.02 6.95 12.81 24 I8_AR1 ActiveIntronRegion 0 12.51 2.39 14.10 8.79 3.27 3.51 9.26 18.87 13.70 13.70 13.25 2.41 3.75 18.44 22.34 13.33 23.77 21.10 18.63 18.68 25.10 8.67 14.19 25 I8_SR2 SilentIntronRegion 0 18.49 8.85 16.00 10.26 9.39 7.68 13.15 17.87 22.47 18.16 17.27 12.27 10.86 14.18 25.17 18.67 20.24 15.06 15.53 25.56 20.13 10.22 21.42 26 I8_AR2 ActiveIntronRegion 0 14.63 6.39 11.10 8.62 8.51 7.88 12.91 19.98 17.73 16.06 11.32 8.14 8.38 19.83 19.88 12.08 18.54 19.59 24.62 15.51 18.68 10.52 15.18 27 I8_SR3 SilentIntronRegion 0 23.92 9.56 7.25 10.45 9.00 6.21 18.01 18.38 11.81 11.51 7.66 7.04 7.55 11.12 16.06 16.11 18.60 27.50 31.00 18.77 13.92 5.99 12.10 28 I8_AR3 ActiveIntronRegion 0 13.59 6.22 3.90 4.22 8.99 8.70 15.97 8.81 10.14 7.50 2.79 13.47 5.52 10.83 11.00 4.94 11.01 9.84 11.98 15.06 15.11 6.08 14.60 29 ER9a ExonRegion 0 22.59 56.39 96.76 41.31 39.40 70.68 53.59 96.02 65.62 158.39 139.25 48.66 35.72 136.99 107.09 101.72 130.15 238.65 154.91 182.10 107.82 71.11 72.35 30 E9a_E10a KnownJunction 0 19.41 72.09 81.37 36.73 49.24 64.34 60.02 86.01 64.93 151.47 124.45 55.37 60.22 102.60 95.19 94.33 104.25 158.97 92.99 173.09 88.96 58.60 52.24 31 I9 Intron 0 5.84 4.07 5.44 3.33 2.70 2.25 7.15 6.41 5.47 6.15 2.17 4.55 3.14 4.37 9.43 7.76 11.88 25.14 14.32 17.40 15.40 4.58 16.82 32 I9_AR1 ActiveIntronRegion 0 4.35 2.74 6.21 4.79 1.96 2.70 6.07 3.62 3.13 3.89 2.12 4.74 1.77 3.92 12.32 6.18 10.68 21.80 16.10 16.14 12.03 2.44 16.28 33 I9_SR2 SilentIntronRegion 0 5.96 3.16 4.31 2.97 2.09 1.91 6.97 4.55 3.89 5.11 1.66 3.89 3.02 4.33 10.69 6.98 11.20 23.73 14.69 17.76 16.40 3.20 16.59 34 I9_AR2 ActiveIntronRegion 0 24.09 8.26 5.38 5.77 5.71 3.17 16.15 4.97 6.92 5.56 2.55 10.30 6.92 6.19 11.86 12.38 14.08 27.53 23.30 24.45 13.89 9.75 19.09 35 I9_SR3 SilentIntronRegion 0 6.03 2.00 4.49 0.80 1.84 2.17 6.64 6.09 3.98 5.05 2.09 9.33 5.36 5.64 10.52 7.02 14.95 16.47 15.05 14.43 13.86 4.50 16.48 36 I9_SR4 SilentIntronRegion 0 1.97 0.79 3.02 2.27 1.58 1.69 4.34 3.07 4.17 4.08 1.41 1.87 1.49 3.07 6.57 5.03 9.99 20.37 10.75 10.84 11.40 2.42 12.76 37 I9_AR4 ActiveIntronRegion 0 1.92 2.33 4.67 0.69 0.96 1.77 3.57 8.39 4.29 4.16 0.46 1.79 0.46 4.05 8.29 6.97 16.59 23.11 14.96 15.15 8.49 1.91 13.58 38 I9_AR5 ActiveIntronRegion 0 2.12 0.00 8.27 2.73 5.35 0.00 10.43 1.73 5.40 5.73 1.93 4.33 3.52 0.81 5.80 1.86 16.50 26.79 19.11 10.64 19.83 4.17 15.42 39 I9_AR6 ActiveIntronRegion 0 2.12 0.00 7.46 2.73 0.00 1.83 9.39 1.73 7.86 4.59 0.00 4.33 4.69 1.62 11.61 8.92 18.91 23.18 12.74 19.92 13.82 2.08 26.96 40 I9_AR7 ActiveIntronRegion 0 3.26 1.10 2.72 2.88 2.40 3.76 5.15 1.41 3.66 0.88 2.08 2.93 0.53 2.34 9.03 7.00 10.69 18.86 7.11 8.26 10.07 1.52 16.37 41 I9_SR6 SilentIntronRegion 0 4.37 4.20 4.39 3.25 3.30 1.93 7.14 6.53 5.71 5.60 1.70 4.29 2.76 4.05 9.42 6.91 9.69 19.87 12.00 18.03 14.08 3.80 15.79 42 I9_AR8 ActiveIntronRegion 0 7.54 2.61 5.87 3.92 3.84 2.76 6.14 7.56 6.08 10.47 3.26 6.53 2.62 3.36 7.90 6.31 10.98 21.18 9.84 17.32 16.62 3.83 22.34 43 I9_SR7 SilentIntronRegion 0 7.82 5.95 6.26 4.44 3.65 2.18 9.33 7.81 7.59 7.18 3.11 7.33 5.43 4.82 9.58 9.48 13.32 29.90 15.67 19.58 16.26 6.36 18.82 44 I9_AR9 ActiveIntronRegion 0 0.00 2.50 18.00 5.35 0.00 0.00 7.03 10.64 6.08 8.82 3.27 0.00 4.69 3.25 10.49 11.66 24.88 30.99 14.21 40.43 27.63 11.38 18.30 45 I9_AR10 ActiveIntronRegion 0 0.00 5.23 17.42 2.73 0.57 0.00 7.38 10.25 6.53 8.68 3.87 1.55 4.69 0.81 10.15 11.25 29.71 27.72 18.43 37.23 24.40 12.50 24.75 46 I9_AR11 ActiveIntronRegion 0 7.98 4.43 10.08 3.12 2.18 2.94 10.05 7.68 7.96 8.03 2.81 5.20 1.29 4.77 9.41 9.51 15.44 41.37 17.10 26.10 15.10 7.55 15.76 47 I9_SR8 SilentIntronRegion 0 6.46 5.90 9.87 4.07 2.98 3.79 7.04 11.67 8.12 10.63 3.74 4.24 2.77 5.79 8.72 10.91 17.99 38.43 18.11 19.19 22.17 8.70 22.72 48 I9_AR12 ActiveIntronRegion 0 4.23 10.49 13.62 4.43 3.13 2.12 5.94 8.56 5.53 6.65 1.62 3.42 3.62 4.69 9.28 4.81 10.16 23.10 11.48 17.04 13.09 4.96 13.40 49 ER10a ExonRegion 0 13.48 48.80 61.32 41.46 21.39 37.16 31.90 71.93 54.82 120.93 111.75 37.87 38.35 127.81 96.32 88.14 95.54 185.93 102.90 164.29 106.47 57.62 57.30 50 E10_Da NovelBoundary 0 18.00 0.00 4.76 4.69 4.33 0.00 6.76 5.38 5.90 3.14 0.00 0.00 0.00 0.00 33.01 0.00 21.88 17.41 4.80 3.26 11.49 0.00 4.01 51 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 E10a_E13a KnownJunction 0 3.41 6.51 10.41 11.55 11.88 13.29 4.15 9.08 27.05 24.31 42.38 0.00 0.00 48.50 22.25 17.77 22.81 32.25 13.27 17.51 42.94 8.45 12.21 53 ER11a ExonRegion 0 4.44 1.22 4.43 0.00 2.41 3.85 5.55 3.09 3.19 4.03 2.96 2.37 1.16 6.72 10.12 1.01 4.95 8.73 6.73 5.83 7.23 2.50 5.99 54 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 E12_Aa NovelBoundary 0 7.48 9.54 12.36 7.66 0.00 10.16 21.02 7.35 9.92 11.20 7.37 0.00 6.66 5.30 18.79 7.86 8.42 21.97 4.80 8.12 15.94 6.18 24.24 56 ER12a ExonRegion 0 0.00 3.35 0.00 0.00 6.60 3.02 4.44 0.00 0.12 0.37 0.00 2.93 0.00 4.17 4.91 9.44 2.72 0.12 2.62 3.40 5.44 0.00 10.14 57 I12_AR1 ActiveIntronRegion 0 9.91 5.65 9.49 5.96 3.44 3.68 6.68 15.11 14.40 12.49 6.96 5.99 6.81 7.26 13.85 6.27 11.04 28.55 16.56 12.26 14.28 3.32 16.47 58 I12_AR3 ActiveIntronRegion 1 7.75 27.90 36.48 37.01 23.77 42.12 39.57 49.88 26.35 55.65 55.55 24.98 22.28 77.15 65.50 25.29 76.87 66.48 85.64 77.07 44.63 37.74 39.22 59 ER13a ExonRegion 1 10.86 25.48 39.81 22.11 7.18 35.16 16.70 31.31 39.17 79.19 85.39 13.27 12.03 88.01 74.11 62.18 97.06 132.57 103.25 84.63 74.25 27.43 48.06 60 E13a_E14a KnownJunction 0 17.34 24.34 57.12 40.65 12.14 40.66 20.01 51.47 51.48 121.39 76.70 16.51 6.66 93.47 71.20 79.81 90.51 210.96 141.84 120.16 62.83 34.72 49.51 61 ER14a ExonRegion 0 12.86 27.42 65.76 29.40 15.86 41.38 26.57 65.81 45.30 105.55 88.81 25.27 27.34 163.93 118.41 104.17 139.28 193.37 92.32 87.84 78.98 36.69 44.46 62 E14a_E15a KnownJunction 1 14.45 62.16 85.54 25.84 25.81 55.88 38.51 62.88 38.60 112.82 114.87 19.96 13.15 215.32 145.13 73.31 192.05 162.91 95.81 90.57 70.36 24.62 44.39 63 E15_Aa NovelBoundary 0 0.00 3.35 1.77 0.00 0.00 4.32 0.00 13.47 0.00 3.09 0.00 0.00 0.00 14.30 23.86 0.00 0.00 15.50 17.04 4.86 11.37 0.00 25.95 64 ER15a ExonRegion 0 18.09 38.92 62.76 33.87 29.15 45.71 41.90 72.88 46.12 104.32 82.38 19.04 19.85 233.79 164.87 100.39 168.10 129.31 91.56 90.14 82.41 42.38 55.58 65 E15a_E16a KnownJunction 0 20.52 67.03 71.49 33.80 33.53 49.01 37.58 73.81 95.49 103.07 108.45 37.66 59.57 250.05 161.07 181.92 195.79 226.00 111.53 114.99 82.84 47.09 85.53 66 ER16a ExonRegion 0 22.30 49.64 92.97 50.59 27.85 59.82 32.01 101.39 80.48 155.58 125.44 30.43 28.51 306.45 237.21 189.72 200.38 268.75 135.58 128.19 109.51 82.67 73.38 67 E16a_E17a KnownJunction 1 21.41 51.77 97.45 58.40 31.49 46.17 26.90 97.63 98.61 188.95 122.24 43.06 12.17 308.14 138.45 168.84 177.28 211.29 149.65 155.89 90.13 82.24 69.23 68 ER17a ExonRegion 0 30.70 51.31 109.36 57.63 39.52 53.77 45.45 93.81 86.61 177.38 119.79 39.59 49.61 313.64 254.26 155.67 213.24 209.57 131.47 154.98 115.31 74.18 60.87 69 E17a_E18a KnownJunction 0 30.67 67.42 113.80 72.92 12.14 64.22 38.33 106.63 78.76 172.86 140.56 24.31 46.10 325.74 241.05 228.74 225.71 224.43 164.52 106.87 152.78 64.79 35.25 70 ER18a ExonRegion 0 39.80 56.28 101.44 58.55 29.26 50.94 26.27 77.08 69.05 152.94 145.42 26.54 51.89 336.17 250.41 172.38 216.53 268.86 124.02 152.91 138.92 64.81 56.41 71 E18a_E19a KnownJunction 0 55.64 70.84 110.49 59.77 68.25 38.33 13.69 81.29 72.54 152.33 138.46 49.82 47.56 302.20 232.03 200.20 159.98 288.31 110.21 156.79 100.70 38.21 50.96 72 ER19a ExonRegion 0 25.28 53.31 108.29 68.78 28.29 52.82 26.31 93.15 72.17 158.78 113.66 34.71 66.50 271.58 240.80 171.48 180.02 236.35 98.35 167.40 86.38 32.26 51.13 73 E19a_E20a KnownJunction 0 29.34 78.54 119.04 86.40 31.15 58.72 51.49 119.77 89.06 179.87 124.03 73.82 116.55 298.08 241.30 177.65 275.08 293.49 116.99 180.69 124.48 54.93 68.55 74 ER20a ExonRegion 0 24.14 64.31 118.98 71.76 50.00 64.70 55.48 116.19 95.70 160.37 118.70 38.69 65.06 349.42 280.57 185.28 247.96 261.77 137.00 156.35 115.24 58.26 79.75 75 E20a_E21a KnownJunction 0 29.71 36.84 151.35 83.61 51.27 74.11 48.76 156.62 88.22 161.79 107.45 37.36 28.24 328.39 258.85 157.99 201.96 302.11 81.79 228.82 101.31 41.39 47.21 76 I20_SR1 SilentIntronRegion 0 5.19 1.64 6.04 3.24 2.87 4.16 4.92 8.24 4.30 8.05 6.66 3.67 6.57 28.04 32.77 23.53 21.00 12.28 8.13 6.81 6.48 4.35 6.69 77 I20_AR1 ActiveIntronRegion 0 9.53 2.17 4.23 4.37 2.14 4.68 6.06 9.69 2.61 6.15 5.24 11.79 11.88 34.40 33.48 20.26 22.29 12.55 4.67 5.73 11.20 3.46 8.24 78 I20_AR2 ActiveIntronRegion 0 6.16 1.19 3.82 2.73 2.56 0.78 5.42 4.15 3.67 5.03 4.52 3.75 4.29 43.28 42.08 15.79 23.76 13.71 5.34 8.82 7.83 4.82 8.43 79 ER21a ExonRegion 0 30.97 47.34 144.69 82.34 44.22 69.14 48.32 149.41 101.31 201.05 150.87 40.36 59.89 347.63 251.40 238.39 237.49 342.27 130.58 173.86 124.87 64.80 94.76 80 E21a_E22a KnownJunction 0 33.71 63.08 161.47 108.81 48.30 51.67 39.79 142.49 92.59 198.29 148.14 50.27 39.28 344.81 282.59 189.18 219.26 302.20 95.81 192.39 115.40 64.79 88.78 81 ER22a ExonRegion 0 40.52 57.24 154.26 83.90 42.93 69.01 48.67 128.96 95.84 197.73 158.20 32.62 33.71 342.12 257.97 230.55 225.44 264.35 120.27 193.53 133.16 56.10 96.55 82 E22a_E23a KnownJunction 0 34.82 52.95 136.63 79.68 30.56 53.95 57.01 114.35 102.08 186.82 143.35 39.61 37.17 367.65 237.22 225.33 213.09 236.53 159.53 209.90 168.90 68.28 75.72 83 ER23a ExonRegion 0 36.32 45.77 118.51 60.01 37.64 53.62 44.05 94.36 82.62 156.94 143.74 26.70 40.84 296.48 235.73 178.62 213.21 219.34 124.07 161.56 136.26 48.72 77.11 84 E23a_E24a KnownJunction 0 36.30 48.22 128.62 72.58 69.27 101.87 55.78 89.01 74.74 159.67 98.29 61.22 50.65 248.28 208.17 206.36 247.31 256.39 98.45 148.16 116.57 16.84 100.22 85 I23 Intron 0 13.19 6.69 10.95 8.91 6.17 5.03 7.41 12.54 9.08 12.24 6.07 6.20 6.58 15.16 20.06 12.26 12.78 21.68 9.04 8.83 13.41 6.33 7.75 86 I23_SR1 SilentIntronRegion 0 22.32 8.07 9.18 6.43 5.15 4.89 9.94 11.19 7.77 10.82 4.44 11.12 8.70 19.05 22.96 14.20 14.13 20.63 6.13 7.00 11.62 6.46 7.65 87 I23_AR2 ActiveIntronRegion 0 16.07 7.82 12.46 10.98 10.41 4.03 8.88 18.49 11.09 14.18 7.34 6.66 9.41 16.12 23.43 14.39 11.77 21.49 13.26 10.96 16.39 7.36 9.19 88 ER24a ExonRegion 0 37.35 40.21 94.84 55.86 47.88 67.30 32.83 91.94 61.80 129.44 110.07 46.46 33.18 268.40 190.89 147.94 178.28 206.55 106.38 134.48 116.61 53.41 69.03 89 E24a_E25a KnownJunction 0 24.52 49.33 79.80 53.21 45.42 75.75 25.00 85.48 70.28 132.62 81.07 13.95 19.97 194.77 102.85 88.52 209.72 133.69 85.93 117.54 78.02 43.41 15.79 90 ER25a ExonRegion 0 64.65 139.67 125.18 89.56 89.13 79.04 68.06 112.81 67.41 128.58 86.60 55.82 44.14 191.73 163.89 120.10 152.14 138.36 101.90 110.12 78.15 56.05 65.05