Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MAP2K2 Gene 0 71.93 85.48 258.50 120.76 38.31 51.20 45.17 118.00 91.74 147.86 215.35 52.51 61.48 210.78 246.34 177.17 151.97 193.78 167.91 104.25 210.06 118.11 135.49 2 262948 Transcript 0 5.87 13.35 26.49 10.35 5.27 7.20 4.90 13.64 6.58 18.12 45.02 2.33 6.70 50.07 47.93 21.62 39.05 25.04 41.67 21.41 77.30 20.24 23.81 3 443189 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 394867 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 465472 Transcript 0 0.59 0.56 0.59 0.14 0.00 0.00 0.16 0.00 0.07 0.61 0.75 0.00 0.78 1.01 2.58 0.00 1.10 0.80 0.67 0.66 0.66 0.81 1.31 6 481271 Transcript 0 13.31 5.89 19.32 13.12 3.05 3.59 4.20 9.89 7.99 12.25 8.87 2.19 1.74 22.83 24.92 10.44 16.11 33.01 8.36 15.45 21.26 6.86 19.16 7 472395 Transcript 1 10.20 3.62 6.35 9.02 4.57 4.87 8.74 21.40 17.31 27.90 28.15 39.91 61.06 42.05 68.58 71.60 40.27 66.72 44.48 28.12 34.70 22.43 59.11 8 486884 Transcript 0 31.40 14.43 20.35 15.25 13.47 13.73 14.86 18.69 16.36 16.93 21.15 18.20 19.28 46.78 45.78 60.86 35.95 31.99 25.75 15.80 35.48 19.66 46.47 9 496243 Transcript 0 11147.75 9796.54 20810.30 21619.89 7313.67 6335.27 10804.23 21452.89 20552.60 18390.26 3361.75 2622.40 3629.79 1932.14 3187.97 9177.08 7450.20 26533.77 6302.58 11855.36 5434.37 3582.28 9035.26 10 ER1a ExonRegion 0 0.65 0.00 0.00 0.00 1.03 0.28 0.00 0.00 0.00 1.06 7.43 0.00 1.08 0.00 0.00 1.83 16.76 0.00 11.27 0.65 37.29 0.00 11.52 11 ER1b ExonRegion 0 1.60 3.87 2.79 2.07 1.99 6.83 0.00 0.89 1.65 2.37 24.97 0.07 10.74 0.00 0.00 4.51 21.03 2.41 36.68 2.71 103.57 0.03 18.85 12 E1_Da KnownBoundary 0 0.00 2.50 5.03 1.60 0.00 2.61 0.00 0.00 1.59 0.00 4.74 0.00 0.00 0.00 0.00 0.00 0.00 2.24 4.42 3.20 12.79 0.00 3.16 13 E1_Db KnownBoundary 0 0.00 5.85 1.80 0.00 0.00 0.00 0.00 0.00 2.81 3.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.45 4.61 0.00 11.80 0.00 0.00 14 ER1c ExonRegion 0 0.00 6.10 4.90 2.73 0.00 3.67 0.00 1.73 3.71 3.44 5.80 0.00 9.38 1.62 0.00 0.00 0.00 7.39 25.48 2.13 44.07 0.00 5.87 15 ER1d ExonRegion 1 11.10 26.70 52.99 20.70 9.51 14.12 9.80 27.28 13.17 35.19 82.60 4.66 12.32 100.14 95.85 41.41 61.34 50.08 72.06 42.17 117.30 40.48 36.10 16 E1_Ac KnownBoundary 1 48.16 106.63 290.82 128.75 67.49 45.20 54.19 164.58 85.73 179.22 270.91 25.21 12.99 339.87 348.85 165.34 194.11 241.26 230.22 196.10 278.99 132.75 139.74 17 E1c_E2a KnownJunction 1 106.54 175.56 465.80 183.83 89.47 81.49 62.58 208.86 129.51 246.65 420.63 64.07 30.19 212.67 199.89 216.52 283.40 408.52 237.65 206.64 373.81 118.43 142.56 18 E1c_E3a NovelJunction 0 0.00 6.25 4.61 0.00 0.00 8.69 0.00 2.51 4.48 5.48 0.00 0.00 6.49 2.47 4.45 7.78 17.58 4.31 0.00 0.00 0.00 3.12 4.01 19 ER1e ExonRegion 1 42.33 128.12 254.26 119.25 72.25 54.10 43.69 169.39 80.90 165.73 290.90 28.14 28.14 328.88 355.40 181.30 206.31 255.91 235.72 186.17 301.91 141.68 161.52 20 ER1f ExonRegion 1 52.77 129.59 324.51 123.18 73.26 51.28 48.53 186.32 100.56 192.05 342.79 37.47 28.30 285.73 289.63 186.32 224.01 308.96 240.99 194.42 349.25 124.87 137.82 21 ER2a ExonRegion 0 65.00 148.25 677.36 223.41 42.88 91.39 76.87 269.41 218.86 396.87 647.64 92.09 86.82 457.82 474.84 321.86 409.39 393.56 343.46 274.07 622.02 258.94 220.44 22 E2a_E3a KnownJunction 0 76.75 84.98 987.55 359.66 73.77 99.43 37.98 369.75 271.06 509.84 637.06 129.79 143.66 456.83 436.00 428.78 483.12 681.70 387.40 311.85 655.58 284.67 281.70 23 ER3a ExonRegion 0 134.32 227.91 1110.47 446.14 128.58 145.81 143.17 407.57 346.71 579.17 937.10 220.42 220.65 822.94 798.99 663.88 595.37 883.82 684.46 399.69 861.79 475.69 496.61 24 E3_Da NovelBoundary 0 18.30 3.29 17.42 11.15 7.30 23.17 10.20 15.20 19.04 11.63 21.11 0.00 0.00 24.78 32.88 26.32 21.32 41.29 22.02 23.07 19.77 11.45 34.91 25 E3a_E4d KnownJunction 0 273.23 317.25 1331.80 621.77 220.29 197.84 228.23 439.57 352.57 606.70 961.09 241.73 302.42 797.28 860.50 592.15 635.06 938.17 863.08 402.17 905.66 522.02 609.15 26 I3 Intron 0 14.83 10.31 17.42 12.36 8.35 6.22 9.67 11.80 8.90 11.43 11.61 12.33 11.10 16.65 21.52 19.12 14.91 23.51 15.30 12.68 14.84 8.85 27.60 27 I3_SR1 SilentIntronRegion 0 14.04 9.98 18.10 12.26 8.16 5.72 9.00 11.45 8.42 11.67 12.31 12.18 11.17 15.96 23.45 21.19 13.68 26.49 15.21 11.22 13.66 8.15 28.73 28 I3_AR1 ActiveIntronRegion 0 12.40 7.29 21.38 14.59 13.66 9.50 15.81 14.83 12.13 9.86 9.83 18.16 16.13 23.00 24.21 18.90 19.33 22.20 27.03 14.71 11.98 6.81 31.06 29 I3_SR3 SilentIntronRegion 0 22.44 7.32 16.79 7.31 3.75 2.57 4.50 14.94 9.57 10.59 8.12 6.42 8.53 13.15 23.45 16.05 15.18 19.47 12.74 20.00 18.93 15.00 21.14 30 I3_AR2 ActiveIntronRegion 0 22.32 24.76 19.42 21.57 12.86 9.09 12.56 14.40 11.68 20.23 17.84 17.10 14.03 19.88 19.46 22.78 15.53 32.44 13.07 16.16 22.19 12.27 39.87 31 I3_AR3 ActiveIntronRegion 1 8.47 8.13 4.90 9.54 7.58 11.00 2.65 5.76 1.24 8.41 13.53 21.65 0.00 7.31 8.70 12.88 13.20 12.01 9.56 6.03 15.43 4.17 14.68 32 I3_AR4 ActiveIntronRegion 0 7.12 5.36 3.68 2.48 3.16 6.17 1.81 4.09 0.90 6.05 8.26 13.38 0.00 6.05 8.70 8.38 9.00 9.41 6.08 2.71 13.62 2.08 11.21 33 I3_SR5 SilentIntronRegion 0 7.09 6.81 25.55 19.22 3.75 7.34 5.96 18.06 9.08 11.87 5.61 9.31 0.00 8.20 22.19 15.46 19.64 14.41 19.11 14.04 14.99 10.31 28.49 34 I3_AR10 ActiveIntronRegion 0 14.29 10.20 28.37 16.98 7.16 12.97 9.75 13.39 15.05 13.20 14.09 9.12 4.16 15.57 26.70 20.53 26.38 30.23 15.46 18.92 20.04 12.57 28.46 35 ER4a ExonRegion 0 0.00 0.00 0.74 0.41 0.00 0.00 0.26 0.00 0.00 0.69 0.00 0.00 0.00 1.95 5.80 0.00 3.30 0.55 0.96 1.28 0.88 0.00 2.94 36 ER4b ExonRegion 0 7.76 4.31 17.92 11.32 2.57 2.42 3.98 7.63 6.68 9.00 10.94 3.30 2.13 13.73 19.42 12.02 12.91 23.09 9.12 11.19 12.62 6.51 18.48 37 E4_Da KnownBoundary 0 9.56 5.46 25.58 17.98 3.90 0.00 3.89 17.74 6.68 7.01 14.32 13.95 0.00 4.71 0.00 24.78 16.36 46.10 9.60 11.25 15.01 16.59 11.10 38 E4a_E4d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER4c ExonRegion 0 13.31 5.89 19.32 13.12 3.05 3.59 4.20 9.89 7.99 12.25 8.87 2.19 1.74 22.83 24.92 10.44 16.11 33.01 8.36 15.45 21.26 6.86 19.16 40 E4_Ac KnownBoundary 0 24.00 12.96 26.58 15.82 3.23 2.90 9.05 17.37 17.74 29.92 9.53 0.00 6.82 18.72 18.42 19.57 11.41 34.24 17.69 19.11 18.97 11.70 20.32 41 ER4d ExonRegion 0 13.65 12.52 52.45 21.03 10.70 6.18 9.66 19.96 23.66 34.59 33.96 8.06 8.92 39.55 46.53 23.89 27.96 56.12 34.66 19.77 38.63 17.85 27.64 42 E4_Ad KnownBoundary 0 14.22 8.75 42.81 8.86 0.00 2.16 1.94 14.13 19.73 14.67 9.48 12.30 6.17 19.54 34.74 3.42 13.00 46.01 21.65 11.12 17.67 4.71 11.44 43 ER4e ExonRegion 0 279.44 332.82 1255.64 542.11 190.71 215.36 167.08 482.80 397.58 642.94 1098.29 286.70 299.37 901.03 917.89 685.52 651.91 982.21 773.92 443.74 990.87 505.32 574.44 44 E4b_E5a KnownJunction 0 373.40 391.44 1369.14 543.62 217.91 237.65 234.46 552.53 433.16 697.47 1114.23 366.42 312.32 988.06 1272.15 831.75 762.13 1023.53 806.23 530.58 1054.79 535.36 673.60 45 ER5a ExonRegion 0 239.86 360.76 1185.10 508.99 138.68 228.66 188.28 546.66 430.70 642.05 1117.62 286.58 334.25 971.60 988.83 857.00 699.85 1096.07 798.42 463.42 925.39 580.86 607.26 46 E5a_E6a KnownJunction 0 315.32 499.71 1061.67 498.47 145.59 314.71 256.32 524.43 421.90 609.85 1173.19 356.82 488.60 1080.35 1147.42 980.68 743.34 939.29 911.56 522.27 997.95 644.12 623.92 47 ER6a ExonRegion 0 126.30 243.17 979.10 426.58 70.79 160.54 152.21 422.37 346.55 529.34 822.15 197.11 216.64 744.80 753.79 538.50 555.87 610.01 561.85 372.71 791.36 415.05 414.51 48 E6_Da KnownBoundary 1 25.78 6.71 22.53 26.64 3.23 12.78 4.50 52.04 48.55 68.71 42.54 61.67 100.97 42.67 62.43 124.92 77.42 163.58 68.99 31.64 67.83 33.13 46.61 49 E6a_E7d KnownJunction 1 137.28 271.93 759.91 323.04 101.36 174.16 178.73 409.39 268.37 435.30 569.67 190.56 66.23 618.34 581.37 306.76 342.87 563.23 424.67 317.41 546.79 344.13 297.92 50 E6a_E9a NovelJunction 0 10.37 6.31 14.67 6.76 0.00 11.24 10.86 13.60 11.31 10.50 17.32 0.00 0.00 10.18 8.90 30.59 16.92 22.76 38.87 2.43 31.38 11.14 19.63 51 ER6b ExonRegion 1 10.20 3.62 6.35 9.02 4.57 4.87 8.74 21.40 17.31 27.90 28.15 39.91 61.06 42.05 68.58 71.60 40.27 66.72 44.48 28.12 34.70 22.43 59.11 52 E6_Db NovelBoundary 1 117.06 21.25 29.51 37.36 4.33 9.94 19.43 63.79 43.63 56.97 56.49 12.60 98.53 94.30 109.90 117.41 75.36 124.15 82.45 36.82 90.07 59.09 134.62 53 I6 Intron 0 19.18 7.29 13.08 13.27 10.71 8.89 9.49 15.20 15.52 17.65 13.04 21.20 26.40 41.51 44.38 44.47 37.56 31.56 30.88 13.90 38.06 21.08 32.80 54 I6_SR1 SilentIntronRegion 0 19.26 7.32 13.12 13.32 10.76 8.92 9.53 15.26 15.58 17.72 13.08 21.29 26.51 41.68 44.55 44.66 37.71 31.69 31.01 13.96 38.21 21.16 32.94 55 E7_Aa NovelBoundary 0 40.97 15.33 22.53 5.76 23.43 8.69 21.33 13.31 24.48 34.52 25.01 11.85 46.10 71.58 35.60 27.17 49.65 18.12 12.71 15.28 50.97 24.86 54.63 56 ER7a ExonRegion 0 22.61 20.44 15.16 15.97 16.48 18.31 19.12 19.00 16.05 19.06 26.47 24.74 35.11 58.33 53.58 64.79 48.50 35.45 36.29 25.28 42.66 22.80 56.25 57 E7_Ab KnownBoundary 0 549.43 538.46 361.81 458.28 560.70 281.03 620.35 337.42 337.96 298.92 204.84 166.55 243.33 213.96 277.52 489.02 433.47 516.55 366.79 406.13 216.22 163.62 350.76 58 ER7b ExonRegion 1 27.36 22.62 14.91 15.71 15.24 12.08 12.97 20.32 19.19 16.77 13.53 29.73 44.84 20.20 48.76 52.08 35.67 24.92 19.23 12.22 15.32 10.16 30.98 59 E7_Da KnownBoundary 1 1346.98 1135.00 1109.90 1046.52 1111.21 792.44 1111.05 1133.36 996.84 841.48 418.42 108.79 172.39 136.27 412.51 1128.59 954.84 1149.63 657.43 1348.21 503.36 397.65 1204.99 60 E7a_E7c KnownJunction 0 11147.75 9796.54 20810.30 21619.89 7313.67 6335.27 10804.23 21452.89 20552.60 18390.26 3361.75 2622.40 3629.79 1932.14 3187.97 9177.08 7450.20 26533.77 6302.58 11855.36 5434.37 3582.28 9035.26 61 ER7c ExonRegion 0 50.83 16.78 25.34 16.59 17.21 14.58 18.36 22.66 20.42 20.02 26.11 23.52 16.94 55.56 43.46 81.06 39.97 33.10 24.31 13.44 41.13 21.76 56.64 62 E7_Ac KnownBoundary 1 185.81 119.39 109.87 148.47 175.30 150.94 134.87 135.96 88.63 127.35 31.64 105.33 62.01 111.37 135.73 150.05 103.04 127.18 104.66 200.00 62.89 65.27 153.82 63 ER7d ExonRegion 0 62.61 17.57 30.98 28.07 17.39 10.08 15.45 36.11 29.45 33.80 27.26 19.66 24.91 58.51 59.13 57.97 40.79 59.57 25.96 15.95 59.59 28.70 50.12 64 E7_Ad KnownBoundary 0 115.58 9.34 38.44 31.96 15.79 19.19 10.25 37.09 18.72 31.05 21.01 18.76 20.13 61.57 103.59 40.07 53.39 30.88 35.48 18.98 64.37 28.47 36.88 65 ER7e ExonRegion 0 229.03 326.45 824.81 348.36 118.55 182.00 149.65 360.12 286.90 439.17 648.59 152.81 176.42 725.07 848.99 620.23 415.22 683.19 585.55 313.59 606.97 385.55 457.63 66 E7b_E8a KnownJunction 0 229.74 435.58 907.98 394.42 106.45 134.01 134.48 396.20 326.15 497.86 478.44 91.53 165.57 595.21 832.56 389.64 358.77 407.16 408.11 281.81 450.73 308.25 323.70 67 ER7f ExonRegion 0 1.76 1.69 1.02 0.00 0.00 0.00 0.22 0.00 0.21 1.15 2.26 0.00 2.35 1.08 1.93 0.00 0.00 1.85 1.06 0.71 1.10 2.43 0.98 68 I7_SR2 SilentIntronRegion 0 18.16 6.32 12.60 9.41 3.90 6.35 5.05 6.98 7.06 12.61 4.94 4.44 4.87 8.05 17.43 15.35 6.10 15.68 5.84 12.99 8.01 3.64 9.76 69 ER8a ExonRegion 0 394.06 477.14 930.89 388.25 169.31 253.83 217.48 441.42 338.17 592.16 773.87 122.09 181.25 689.75 821.37 591.54 568.92 600.75 588.75 297.18 708.14 383.72 448.40 70 E8a_E9a KnownJunction 0 911.87 740.66 1125.27 509.63 373.09 460.64 319.87 520.53 390.01 694.60 1028.16 183.51 262.97 864.03 1171.40 1147.05 758.76 1003.92 1110.06 362.86 963.60 499.18 841.59 71 ER9a ExonRegion 0 392.41 344.23 1012.41 483.21 209.87 266.20 157.30 465.04 374.66 611.23 776.12 139.45 174.51 650.43 862.05 683.45 501.58 790.48 677.04 333.08 678.14 387.40 527.36 72 E9_Da KnownBoundary 0 16.82 2.96 21.64 11.65 18.93 7.95 7.95 2.14 13.08 7.44 9.63 11.10 0.00 19.42 37.58 30.50 8.79 42.70 4.33 5.69 28.85 6.25 15.71 73 E9a_E9b KnownJunction 0 461.93 378.29 1030.66 570.96 222.92 275.64 190.78 463.89 404.19 600.20 623.58 219.67 202.91 598.15 1051.86 749.80 448.81 719.22 762.09 401.66 528.51 530.53 593.87 74 ER9b ExonRegion 0 20.77 6.08 20.54 13.18 6.73 8.30 7.11 14.42 12.61 11.70 10.85 6.34 5.78 26.43 40.31 36.74 19.39 27.43 16.64 8.69 22.66 14.42 26.53 75 E9_Ab KnownBoundary 0 34.38 9.14 23.18 15.62 12.22 8.46 14.31 12.12 5.32 6.66 19.32 6.30 6.01 18.84 79.86 34.78 42.92 19.94 0.00 10.74 16.56 29.82 46.44 76 ER9c ExonRegion 0 378.81 387.60 1120.51 757.07 173.69 228.65 173.67 531.83 406.27 670.89 772.99 248.13 325.49 818.59 1319.81 1057.88 616.53 824.55 1015.07 465.96 633.40 728.12 742.38 77 E9b_E10a KnownJunction 0 363.40 452.29 1229.82 910.91 177.42 218.00 204.83 645.64 401.88 694.33 982.04 352.92 501.59 1003.65 1582.80 1150.81 652.55 853.28 1186.29 556.21 749.36 621.52 743.77 78 I9 Intron 0 15.25 3.73 15.01 7.05 5.61 2.64 4.99 8.44 8.62 8.68 9.12 5.62 5.98 6.38 12.40 13.05 8.11 18.08 8.45 9.55 11.76 6.28 14.91 79 I9_SR1 SilentIntronRegion 0 16.17 2.60 12.52 5.11 2.57 2.32 5.91 7.36 6.55 5.18 10.20 3.46 1.99 4.48 11.14 14.24 5.34 14.97 8.83 5.88 10.00 3.45 11.61 80 I9_AR1 ActiveIntronRegion 0 18.83 4.63 20.31 8.90 6.95 2.60 6.94 12.93 12.79 16.83 12.67 9.20 14.16 10.14 20.81 20.35 14.06 30.25 15.17 17.09 18.48 7.84 27.29 81 I9_AR2 ActiveIntronRegion 0 16.26 1.37 13.49 7.53 5.89 4.72 2.00 6.67 6.33 5.43 9.27 0.83 2.11 3.89 6.57 7.96 5.21 11.40 6.59 9.70 11.87 5.23 11.61 82 ER10a ExonRegion 0 152.96 208.94 521.99 304.54 79.50 94.69 90.45 257.37 164.95 298.17 367.08 83.84 114.39 376.08 586.57 270.04 242.82 249.42 278.96 214.75 323.51 221.19 201.44 83 ER10b ExonRegion 0 51.97 36.60 23.96 18.93 6.24 21.19 18.09 7.49 5.49 11.34 30.07 20.20 27.10 64.42 66.41 8.92 30.44 22.79 8.85 8.75 22.77 14.12 20.88 84 ER10c ExonRegion 0 9.17 13.56 8.17 6.36 4.46 9.17 7.06 1.15 0.82 2.29 12.89 2.89 14.07 10.83 15.47 0.00 15.40 2.46 3.19 0.00 7.35 4.17 1.96 85 IG46_SR2 SilentIntergenicRegion 0 0.48 4.19 9.61 11.15 3.67 5.03 1.51 4.71 4.21 12.12 4.42 4.95 3.41 5.07 6.28 7.48 4.49 13.03 8.74 8.27 10.08 4.29 13.41 86 IG46_AR1 ActiveIntergenicRegion 0 0.00 1.27 0.81 0.00 0.00 2.91 0.00 0.00 0.00 1.02 9.23 4.55 0.00 8.04 2.61 2.41 9.28 0.00 2.03 3.03 30.33 1.33 21.25