Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ARID3A Gene 0 16.03 11.79 8.18 10.48 20.80 11.04 9.57 16.26 15.66 37.45 121.39 96.85 102.45 151.25 180.55 123.91 155.97 33.95 67.47 16.35 67.26 32.58 57.86 2 263620 Transcript 0 19.66 5.84 10.98 11.56 12.86 10.36 8.91 20.96 18.70 46.89 162.31 93.34 104.70 192.58 257.88 167.29 199.28 46.56 85.89 17.38 85.04 36.51 75.06 3 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.36 1.32 0.61 0.71 1.77 1.42 2.01 0.16 0.00 0.00 0.48 0.00 0.00 4 ER2a ExonRegion 0 1.28 0.62 1.56 1.49 0.64 1.61 1.38 2.14 3.16 9.74 47.22 9.60 14.51 61.00 58.36 35.71 56.96 9.97 22.44 3.30 27.26 6.81 18.64 5 E2a_E3a KnownJunction 0 6.30 5.85 8.75 7.13 0.00 2.16 4.46 11.42 13.98 21.70 119.71 44.26 26.62 173.41 145.62 116.55 185.51 33.29 46.87 11.51 40.03 12.98 26.46 6 ER3a ExonRegion 1 9.12 1.44 4.65 5.62 6.02 3.55 4.15 8.81 6.83 20.87 94.06 22.73 17.72 118.39 145.41 94.89 123.43 22.96 46.02 12.00 45.19 19.23 39.57 7 E3_Da NovelBoundary 0 0.00 0.00 0.00 1.83 0.00 0.00 0.00 2.09 0.00 0.00 0.00 0.00 0.00 0.00 4.70 15.98 0.00 4.85 0.00 0.00 13.90 4.65 23.82 8 E3a_E4a KnownJunction 0 28.89 3.16 9.93 3.03 19.35 18.34 11.92 17.09 10.94 44.32 149.09 59.27 56.00 186.47 250.70 203.79 219.35 47.80 98.17 6.20 67.71 27.43 79.64 9 Ix Intron 0 3.58 1.46 2.97 2.92 1.67 1.57 1.25 2.95 3.12 4.88 3.03 3.15 2.63 2.98 11.88 8.97 8.12 8.00 4.75 4.01 14.01 2.75 18.95 10 Ix_SR1 SilentIntronRegion 0 2.89 0.95 1.76 1.79 1.12 1.47 1.23 1.57 2.30 3.18 2.79 1.73 1.57 2.48 10.26 7.44 7.31 6.34 3.83 3.59 11.14 1.71 16.40 11 Ix_AR2 ActiveIntronRegion 0 8.40 3.10 2.48 6.77 2.74 2.96 3.95 4.12 6.68 8.33 3.76 12.67 8.01 3.25 22.21 11.63 12.28 17.70 6.20 7.47 18.23 4.42 34.23 12 Ix_SR2 SilentIntronRegion 0 3.35 1.35 3.48 3.22 1.82 1.48 1.03 3.14 3.25 5.57 2.91 3.45 2.67 3.21 13.13 9.56 8.47 8.81 5.49 4.22 14.32 2.76 19.70 13 Ix_AR3 ActiveIntronRegion 0 6.65 3.52 5.58 5.97 1.17 2.98 2.12 8.28 6.57 7.23 6.06 7.06 2.43 5.06 11.60 13.26 8.92 6.39 6.53 4.68 17.00 3.69 18.68 14 Ix_SR3 SilentIntronRegion 0 3.83 1.72 2.85 2.62 1.78 1.58 1.31 3.15 2.88 4.43 3.10 2.45 2.88 2.74 9.89 8.48 7.65 7.02 3.82 3.55 15.09 3.34 18.13 15 E4_Aa NovelBoundary 0 0.00 0.00 6.30 11.35 0.00 0.00 8.88 4.03 5.70 7.28 6.90 0.00 0.00 14.48 8.90 8.12 21.51 14.76 7.91 5.11 14.83 8.45 39.52 16 ER4a ExonRegion 0 20.93 1.25 5.27 8.12 13.93 14.02 10.16 21.40 17.78 50.01 176.48 69.75 79.02 252.94 296.05 197.75 222.79 45.99 106.78 19.12 83.56 50.38 104.71 17 E4_Da NovelBoundary 0 7.26 2.76 2.96 4.46 8.57 0.00 0.00 4.44 4.80 9.21 5.16 0.00 0.00 14.48 9.52 28.88 24.31 15.84 3.86 6.39 22.55 2.76 15.71 18 E4a_E5a KnownJunction 0 17.78 2.50 6.77 17.05 19.86 16.24 10.51 41.24 16.09 72.90 234.32 86.28 115.41 238.04 317.08 258.22 244.23 52.89 133.75 26.91 103.66 33.49 90.40 19 Ix Intron 0 4.12 1.79 2.16 3.66 2.43 2.34 1.35 5.30 4.26 6.85 5.89 2.48 2.23 7.61 14.18 14.33 10.59 13.29 8.08 4.42 14.60 4.76 13.69 20 Ix_SR1 SilentIntronRegion 0 4.05 1.82 2.16 3.55 2.39 2.59 1.44 4.96 4.31 6.91 5.80 2.69 1.99 7.73 14.24 14.03 11.07 13.18 8.62 4.28 13.86 4.90 13.97 21 Ix_AR1 ActiveIntronRegion 0 2.12 0.00 2.63 3.37 2.68 1.51 0.70 1.63 4.94 3.78 2.96 0.00 0.00 8.50 15.70 23.34 10.29 8.31 7.87 3.07 16.59 0.00 11.49 22 Ix_AR2 ActiveIntronRegion 0 4.92 1.72 2.10 4.63 2.74 0.52 0.75 8.37 3.83 6.69 6.94 1.12 4.37 6.62 13.60 15.79 6.93 14.74 4.04 5.64 20.17 4.12 11.77 23 E5_Aa NovelBoundary 0 3.04 3.35 11.24 3.06 4.24 10.90 6.76 10.68 8.77 2.20 11.21 0.00 0.00 4.89 18.54 4.36 14.21 38.63 9.04 14.76 17.30 8.88 11.27 24 ER5a ExonRegion 0 16.36 6.79 16.29 17.18 11.74 11.02 13.52 38.85 30.46 73.97 293.25 155.72 135.81 283.06 353.51 272.64 296.13 89.59 112.47 39.41 147.88 57.13 126.63 25 E5a_E6a KnownJunction 0 37.78 2.83 31.78 26.80 11.38 13.34 5.92 40.01 41.15 113.14 322.82 259.73 270.27 346.40 546.02 389.98 336.04 120.71 168.19 34.13 149.44 63.07 189.08 26 ER6a ExonRegion 0 26.06 8.02 13.33 13.20 15.98 15.42 9.00 25.13 26.01 54.50 214.60 151.39 166.89 234.59 334.35 253.98 259.09 75.22 113.68 28.05 111.75 47.58 97.47 27 E6_Da NovelBoundary 0 3.78 10.00 6.50 5.26 10.36 8.35 3.80 12.90 18.20 3.63 6.53 5.85 6.17 11.65 18.17 18.88 21.88 15.21 18.26 17.71 22.18 11.02 24.50 28 E6a_E7a KnownJunction 0 50.53 5.85 9.11 15.38 22.67 7.72 18.24 23.37 19.24 30.33 157.41 97.38 140.25 255.23 259.23 201.23 208.13 46.97 182.22 14.89 91.25 37.84 64.62 29 Ix Intron 0 9.60 9.47 3.81 12.45 13.78 8.32 3.57 7.89 7.67 13.83 14.69 15.76 12.65 14.70 26.36 41.54 14.57 26.91 26.95 11.22 21.61 16.35 39.96 30 Ix_AR1 ActiveIntronRegion 0 10.86 10.74 4.68 15.32 15.75 9.96 4.20 9.72 9.44 16.76 17.21 18.74 14.36 16.94 28.51 46.19 14.94 32.71 32.68 13.48 23.94 18.86 43.42 31 Ix_SR1 SilentIntronRegion 0 5.13 5.12 0.00 0.00 5.87 0.99 1.27 0.00 0.00 1.15 4.27 2.58 7.58 6.00 22.82 26.58 16.12 1.85 3.12 1.80 14.20 7.29 30.83 32 E7_Aa NovelBoundary 0 10.89 13.09 0.00 10.39 8.06 0.00 4.50 3.98 6.37 10.99 14.85 6.15 6.49 6.95 9.64 20.51 8.88 19.65 27.29 14.13 25.58 2.51 30.82 33 Ix_AR2 ActiveIntronRegion 0 2.38 1.86 0.00 0.00 4.35 1.76 0.06 0.00 0.00 1.15 3.06 3.61 0.59 3.25 5.92 11.89 7.15 1.85 0.00 0.62 6.70 1.91 14.32 34 ER7a ExonRegion 0 19.28 5.80 8.58 12.23 7.82 9.34 8.35 22.69 19.55 49.35 170.28 100.23 115.99 197.31 264.14 128.95 232.30 41.87 76.95 21.00 118.64 35.73 60.00 35 E7a_E8a KnownJunction 0 21.86 8.22 23.06 15.82 4.07 10.90 3.75 17.37 30.73 69.17 130.09 63.77 81.33 139.50 251.31 98.86 201.03 44.98 27.86 11.63 124.42 41.76 93.47 36 ER8a ExonRegion 0 11.93 5.07 16.04 12.38 10.43 12.65 10.83 23.24 20.90 51.71 166.74 124.42 157.99 234.55 353.04 132.85 238.26 40.74 61.04 17.39 103.20 43.16 87.71 37 E8_Da NovelBoundary 0 27.63 6.51 4.32 19.18 22.75 2.90 11.13 24.44 15.39 29.98 11.95 32.86 35.71 39.73 37.95 60.16 44.51 53.10 36.24 14.96 33.30 23.33 73.24 38 E8a_E9a KnownJunction 0 21.04 6.71 10.11 13.42 11.88 9.88 13.29 23.62 22.25 43.25 217.21 89.28 132.62 211.49 399.04 165.00 218.42 43.19 96.66 14.83 91.92 63.93 61.72 39 Ix Intron 0 5.81 2.85 3.73 5.45 4.22 6.64 2.86 6.47 4.41 10.68 10.61 9.34 7.43 15.27 19.77 23.96 18.13 23.02 10.23 7.58 18.91 7.06 21.78 40 Ix_AR1 ActiveIntronRegion 0 7.96 1.53 5.15 9.52 4.99 12.62 1.71 6.23 4.44 11.15 7.09 6.17 7.51 18.81 18.42 23.41 21.38 25.85 10.79 6.99 22.29 7.81 21.40 41 Ix_SR1 SilentIntronRegion 0 4.78 3.53 3.17 3.53 3.95 3.98 3.45 6.71 4.48 10.84 12.43 11.11 7.62 14.14 20.83 24.79 17.21 22.19 10.24 8.13 18.00 6.88 22.71 42 E9_Aa NovelBoundary 1 0.00 0.00 8.19 6.03 12.48 16.07 4.37 11.42 5.06 19.50 10.27 0.00 53.57 18.84 19.53 45.03 17.48 50.86 22.21 14.45 5.56 11.27 33.80 43 ER9a ExonRegion 1 25.45 29.26 10.50 16.10 49.93 19.58 17.07 18.94 20.12 45.24 100.27 158.32 164.16 148.14 150.48 124.85 144.82 28.65 81.12 17.72 54.25 43.58 60.82