Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LASS4 Gene 0 63.24 60.87 138.77 113.55 51.38 7.77 32.79 103.36 134.62 161.54 179.36 19.57 44.03 147.60 134.94 132.69 207.50 151.65 82.85 47.47 28.43 75.02 86.33 2 251363 Transcript 0 85.24 78.04 168.41 140.44 68.84 10.37 43.83 121.37 163.54 189.61 218.76 21.06 47.46 169.78 156.85 150.96 256.15 182.49 95.94 58.02 34.43 88.61 104.39 3 ER1a ExonRegion 0 20.04 27.27 15.55 5.55 7.73 3.25 10.67 9.04 7.57 20.08 38.41 2.41 1.77 20.22 27.71 39.98 42.85 16.07 18.46 2.69 5.30 17.58 18.14 4 E1a_E2a KnownJunction 0 2.96 11.45 29.66 23.47 4.33 8.23 7.99 22.10 17.79 41.21 29.80 0.00 19.15 14.36 8.90 4.02 34.32 17.91 3.67 6.07 8.59 10.96 3.50 5 E1a_E3a NovelJunction 0 0.00 0.00 0.00 1.43 0.00 0.00 0.00 1.89 1.65 1.32 0.00 0.00 0.00 0.00 0.00 0.00 12.62 0.00 0.00 0.00 4.76 2.51 0.00 6 ER2a ExonRegion 0 26.00 34.91 86.13 62.73 10.24 2.23 12.43 75.74 75.63 121.89 112.81 10.45 20.70 75.44 68.82 85.59 122.32 108.84 68.50 38.88 19.17 49.99 47.79 7 E2a_E3a KnownJunction 0 9.71 10.00 21.47 29.00 6.88 5.79 8.74 40.09 47.28 76.26 77.81 0.00 34.74 34.08 17.80 31.10 84.43 57.79 8.66 16.87 10.69 5.63 0.00 8 E2a_E4a NovelJunction 0 0.00 0.00 15.05 25.14 7.56 8.29 1.68 8.50 19.30 36.29 11.95 0.00 0.00 0.00 4.45 3.85 0.00 1.58 0.00 0.00 0.00 6.00 0.00 9 I2 Intron 0 23.78 18.55 20.22 20.33 16.74 1.25 9.90 26.20 22.57 19.95 6.90 3.97 7.59 5.30 12.87 24.88 24.44 27.22 13.57 23.72 2.03 4.31 17.37 10 I2_AR1 ActiveIntronRegion 0 16.53 16.01 41.07 25.67 6.95 0.30 8.53 22.44 26.54 42.50 7.55 5.86 5.69 6.67 15.82 34.88 45.43 55.97 18.23 35.45 3.61 4.29 24.19 11 I2_SR2 SilentIntronRegion 0 17.62 12.72 11.87 12.00 6.50 0.59 5.04 8.76 5.78 5.85 3.66 1.48 5.05 3.02 11.40 11.49 19.74 12.72 6.17 17.52 0.54 1.35 16.36 12 I2_AR2 ActiveIntronRegion 0 16.34 7.44 22.81 22.25 15.62 1.26 8.59 27.09 17.52 21.94 8.01 9.59 12.57 11.04 19.57 36.78 26.08 29.07 20.14 27.34 1.89 2.86 40.27 13 I2_SR3 SilentIntronRegion 0 13.81 9.58 12.76 13.20 9.71 0.45 7.36 8.51 6.28 7.00 3.79 2.25 7.42 3.57 11.74 11.93 14.81 13.55 7.76 10.55 2.13 1.54 9.23 14 I2_SR4 SilentIntronRegion 0 10.00 5.36 17.26 16.52 11.76 1.41 4.80 15.00 10.92 8.08 4.25 4.25 6.82 3.83 7.30 12.41 21.41 23.12 6.65 19.18 1.94 0.69 8.71 15 I2_AR5 ActiveIntronRegion 0 21.27 12.50 25.45 20.34 10.84 0.50 8.06 16.66 20.35 21.09 7.83 4.82 6.11 5.50 17.18 30.04 24.25 38.96 18.47 23.22 3.10 3.94 24.33 16 I2_SR5 SilentIntronRegion 0 26.29 13.25 19.39 17.25 15.21 1.30 9.42 22.75 19.46 17.55 5.40 3.18 8.89 4.00 12.61 25.53 20.92 29.23 11.83 23.86 1.62 2.68 17.80 17 I2_AR6 ActiveIntronRegion 0 70.95 36.93 23.18 48.05 15.97 3.43 9.94 27.93 24.06 19.02 0.55 2.47 5.88 3.87 3.91 13.92 21.48 35.43 8.09 34.28 4.06 2.78 12.45 18 I2_SR6 SilentIntronRegion 0 27.11 21.85 16.12 20.13 24.52 1.73 12.36 26.79 22.61 15.84 5.76 5.41 12.43 5.35 13.95 22.02 24.63 21.52 12.41 24.14 1.68 3.33 18.47 19 I2_AR7 ActiveIntronRegion 1 34.90 15.15 16.77 20.87 10.49 1.58 8.23 45.75 37.68 24.20 12.47 15.62 18.02 8.34 17.07 13.93 51.00 36.95 16.61 40.30 3.50 16.38 22.23 20 I2_AR8 ActiveIntronRegion 0 26.31 30.12 22.93 22.54 25.22 3.12 13.78 30.44 33.19 28.07 8.33 4.36 7.04 6.36 17.75 23.35 37.76 24.61 12.62 29.87 1.21 7.13 21.46 21 I2_SR7 SilentIntronRegion 0 19.41 13.85 8.69 22.60 7.52 0.00 11.92 18.13 20.23 13.76 10.21 3.51 1.95 3.06 1.81 13.96 24.17 18.79 14.48 20.71 4.20 4.13 11.14 22 I2_AR9 ActiveIntronRegion 0 43.17 31.54 33.24 38.56 39.91 2.41 17.72 57.27 49.98 36.12 14.55 8.77 10.11 6.03 17.77 48.79 40.76 43.10 25.30 41.68 5.16 12.18 27.11 23 I2_SR8 SilentIntronRegion 0 22.82 20.34 30.48 33.48 13.72 2.88 9.35 32.03 32.78 21.84 11.19 3.34 4.52 7.00 14.38 31.24 21.06 37.41 8.81 28.25 0.00 6.19 17.63 24 I2_AR10 ActiveIntronRegion 0 15.16 28.34 24.96 17.23 13.48 0.00 4.32 13.59 26.92 17.51 7.56 0.11 2.49 10.05 15.83 12.79 26.57 27.62 3.47 21.25 1.42 1.85 16.02 25 I2_SR9 SilentIntronRegion 0 20.61 21.39 20.20 22.17 10.35 0.26 8.99 27.93 24.23 23.13 7.58 4.33 3.59 4.59 11.04 25.91 22.81 34.57 18.13 23.07 2.51 8.80 18.55 26 I2_SR10 SilentIntronRegion 0 24.58 29.43 21.16 22.01 16.96 0.95 10.88 36.12 27.53 28.24 7.78 2.38 4.53 5.40 11.95 27.16 25.41 26.58 15.08 25.87 1.86 4.70 13.34 27 I2_SR11 SilentIntronRegion 0 25.29 7.22 15.50 14.60 12.28 1.11 8.37 17.84 18.96 11.55 7.87 0.93 3.01 6.05 9.53 24.19 19.14 21.40 12.69 10.50 1.72 6.49 10.93 28 I2_AR13 ActiveIntronRegion 0 11.09 11.07 32.02 20.06 8.61 1.11 3.47 30.11 26.71 22.05 13.24 2.46 3.11 8.65 13.13 24.56 28.61 22.58 19.91 18.87 4.44 6.73 14.79 29 E3_Aa NovelBoundary 0 17.41 25.65 105.88 51.58 30.22 4.66 23.23 70.81 47.08 54.23 49.43 22.81 0.00 18.48 34.24 48.96 80.79 72.92 59.30 25.31 12.48 15.06 30.30 30 ER3a ExonRegion 0 60.35 53.88 165.31 92.97 35.54 8.61 25.35 104.08 110.81 157.24 171.99 17.24 54.07 136.01 135.36 150.31 253.51 146.47 86.61 53.81 27.28 80.71 108.03 31 E3a_E4a KnownJunction 0 49.64 78.08 137.37 68.19 28.18 0.00 19.17 84.28 110.13 155.58 194.10 11.70 19.97 167.70 123.74 149.36 287.05 152.51 58.45 57.14 19.15 69.87 116.61 32 ER4a ExonRegion 1 73.11 68.61 169.41 114.61 35.28 6.40 34.41 121.64 148.36 179.57 231.55 9.28 34.38 204.75 135.79 160.14 263.99 226.62 102.12 56.53 37.56 95.82 94.57 33 E4a_E5a KnownJunction 1 121.87 94.92 204.96 167.94 59.51 2.16 26.98 154.56 195.22 215.43 273.28 0.00 32.95 174.58 182.09 106.72 416.83 228.74 62.87 46.79 61.41 83.89 97.66 34 ER5a ExonRegion 0 76.39 83.91 168.33 132.58 61.97 13.14 31.13 101.98 152.65 190.42 196.64 11.17 27.04 220.29 167.93 156.15 277.47 163.02 76.26 49.24 36.35 88.02 92.57 35 E5a_E6a KnownJunction 1 132.99 123.99 227.99 202.14 72.75 18.63 43.06 148.36 248.15 244.12 308.24 12.60 6.49 270.76 163.17 258.82 342.68 245.82 105.41 62.77 57.76 112.98 101.07 36 ER6a ExonRegion 0 87.07 106.31 182.96 151.21 53.75 15.56 45.27 146.71 200.41 214.19 259.18 11.94 47.47 216.82 161.87 188.37 336.75 182.26 85.57 69.85 34.58 99.94 105.16 37 E6_Da NovelBoundary 0 29.78 64.40 94.59 53.11 24.11 0.00 17.40 35.45 33.04 70.54 9.48 6.30 0.00 27.08 14.46 16.24 28.80 24.71 32.00 12.40 3.15 16.90 12.46 38 E6a_E7a KnownJunction 1 59.34 80.91 158.27 130.22 58.15 23.05 62.84 158.63 151.94 187.74 190.89 0.00 27.76 130.14 199.52 84.00 254.42 159.68 49.60 70.76 19.52 70.05 87.07 39 I6 Intron 0 41.24 39.91 57.03 64.01 33.35 1.31 15.74 46.86 35.86 51.42 23.54 2.04 4.43 21.67 18.85 41.73 38.31 29.21 21.45 11.89 3.47 15.22 17.26 40 I6_AR1 ActiveIntronRegion 0 14.66 11.91 20.59 16.13 12.11 0.00 3.71 8.17 12.37 19.29 17.01 2.20 0.17 21.38 15.93 14.86 26.11 10.25 4.05 4.91 0.32 4.28 3.79 41 I6_SR1 SilentIntronRegion 0 46.38 45.32 64.11 73.25 37.48 1.56 18.06 54.28 40.42 57.66 24.89 2.03 5.24 21.86 19.51 46.95 40.81 32.88 24.79 13.25 4.08 17.33 19.85 42 E7_Aa NovelBoundary 0 53.49 55.19 73.62 76.78 27.16 0.00 29.10 59.23 39.24 74.38 25.53 0.00 0.00 11.18 4.45 36.40 42.17 39.46 30.21 9.20 8.77 13.10 29.71 43 ER7a ExonRegion 0 65.78 84.13 198.49 162.56 109.76 13.63 51.45 162.71 201.47 218.79 254.42 24.36 30.16 148.94 173.34 106.36 286.21 166.99 72.95 60.33 36.90 98.78 107.96 44 E7a_E8a KnownJunction 1 173.51 142.34 273.35 223.45 242.70 16.87 76.45 183.81 251.68 249.92 379.94 31.66 19.64 199.07 170.34 204.99 404.30 206.52 146.26 59.76 58.69 144.88 168.17 45 ER8a ExonRegion 0 89.71 102.79 296.70 230.01 140.84 15.42 73.87 184.29 256.25 254.42 314.36 24.86 48.51 250.81 230.76 296.86 349.47 273.88 152.76 80.87 50.61 136.03 178.22 46 E8a_E9a KnownJunction 0 110.69 93.08 269.59 225.91 71.39 7.50 89.21 203.03 218.55 282.91 300.66 42.91 35.22 334.10 314.85 284.37 312.58 366.99 225.23 107.57 52.02 170.35 257.88 47 I8 Intron 0 12.70 4.36 6.26 6.53 2.29 0.00 3.12 12.14 3.16 4.39 3.31 0.76 3.67 1.72 4.90 12.10 24.76 9.46 3.41 2.74 0.00 1.34 5.03 48 I8_SR3 SilentIntronRegion 0 16.86 6.25 6.63 7.61 3.84 0.00 5.06 14.76 4.37 7.48 5.64 1.52 4.46 2.84 9.14 14.49 31.55 13.58 6.05 4.31 0.00 2.66 7.05 49 E9_Aa NovelBoundary 0 40.23 15.72 45.50 53.47 4.33 0.00 12.63 34.30 44.59 44.03 30.96 0.00 6.82 24.72 22.99 38.45 38.90 47.30 18.17 20.77 6.30 25.53 34.57 50 ER9a ExonRegion 0 69.80 75.16 236.37 201.55 75.17 6.58 47.54 166.49 246.45 268.34 268.25 19.80 59.52 193.27 211.21 164.25 293.93 182.81 108.15 83.89 40.47 102.79 122.18 51 E9_Da NovelBoundary 0 14.89 3.35 36.52 16.48 4.33 0.00 0.00 44.48 12.09 14.42 7.16 0.00 0.00 2.47 14.09 41.27 44.32 13.60 0.00 2.94 3.15 3.12 3.93 52 E9a_E10a KnownJunction 0 102.39 88.21 192.25 152.43 81.32 8.35 65.32 107.82 240.80 247.91 290.02 31.51 93.34 167.46 175.17 133.47 216.83 160.22 101.09 79.64 33.61 67.23 54.72 53 E9a_E11a NovelJunction 0 0.00 0.00 17.12 0.00 0.00 0.00 0.00 11.05 1.65 0.00 2.68 0.00 0.00 2.47 6.18 53.32 32.45 0.00 0.00 0.00 2.35 3.12 0.00 54 I9 Intron 0 8.15 2.19 9.00 8.14 7.42 0.85 1.43 7.94 1.99 4.22 3.87 2.20 1.79 8.61 7.15 31.14 25.43 6.22 4.42 2.29 0.68 3.21 4.98 55 I9_SR1 SilentIntronRegion 0 8.20 2.20 9.06 8.19 7.47 0.85 1.44 7.99 2.00 4.24 3.90 2.21 1.78 8.66 7.20 31.33 25.58 6.26 4.44 2.31 0.68 3.23 5.01 56 ER10a ExonRegion 0 173.75 145.43 241.91 266.23 140.54 18.89 70.57 169.05 276.77 299.06 358.60 62.80 131.28 274.11 255.31 250.85 341.60 377.80 234.11 98.19 43.11 171.72 208.36 57 E10_Da NovelBoundary 1 10.74 9.54 13.99 9.86 8.66 5.00 10.38 26.94 9.03 22.56 17.48 0.00 39.28 22.19 27.20 27.86 18.51 13.51 4.33 2.49 0.00 3.12 7.43 58 E10a_E11a KnownJunction 0 235.00 108.40 219.15 255.98 110.44 19.93 81.52 137.93 203.59 226.82 247.64 37.81 133.11 188.12 289.39 222.76 358.77 315.42 198.78 97.60 38.98 151.43 195.74 59 I10 Intron 0 19.55 8.66 10.26 8.65 11.05 1.72 4.45 13.05 6.82 6.77 10.78 1.05 1.84 10.77 11.44 24.55 19.81 6.10 4.88 3.08 1.97 5.23 5.38 60 I10_AR2 ActiveIntronRegion 0 30.90 14.58 18.99 13.61 16.97 2.83 6.74 25.11 10.45 12.39 16.00 1.74 2.06 12.85 13.10 33.10 25.78 8.35 7.12 3.99 4.25 7.63 8.85 61 I10_SR3 SilentIntronRegion 0 30.87 16.97 24.65 22.15 18.37 2.66 6.28 25.59 18.75 14.99 17.16 2.57 4.44 16.25 20.22 39.26 29.16 14.89 9.87 6.64 2.42 6.85 7.64 62 I10_AR3 ActiveIntronRegion 1 14.24 16.08 9.02 13.63 21.65 0.33 3.97 8.80 5.28 14.28 15.64 3.15 0.00 13.14 31.39 39.18 34.51 8.40 6.37 2.90 4.21 17.43 4.00 63 I10_AR4 ActiveIntronRegion 0 10.39 9.24 5.46 12.14 9.24 0.00 2.53 1.89 3.26 12.93 12.65 0.00 0.00 11.96 23.21 29.72 30.61 7.39 6.37 2.13 2.20 16.48 1.07 64 E11_Aa NovelBoundary 0 26.45 9.54 35.51 17.61 15.37 2.38 12.23 31.79 16.03 18.72 14.37 0.00 0.00 28.72 0.00 16.41 43.01 11.73 13.18 5.69 0.00 8.70 3.59 65 ER11a ExonRegion 1 87.29 69.84 159.88 156.23 69.08 10.01 43.81 125.07 168.75 197.56 240.48 53.17 94.01 192.11 170.56 166.42 256.33 204.38 100.37 59.22 33.21 92.50 97.15 66 E11a_E12a KnownJunction 0 90.76 77.42 144.79 111.24 77.59 10.51 58.43 111.52 146.76 202.89 187.05 56.42 91.88 190.71 126.09 149.02 234.03 150.93 95.44 51.58 45.84 77.28 91.17 67 ER12a ExonRegion 0 42.34 33.82 73.49 63.93 30.30 3.85 21.94 72.49 84.40 108.72 105.26 12.29 28.51 101.04 97.82 78.09 120.82 85.55 45.19 24.48 21.11 39.66 47.18 68 IG50_AR1 ActiveIntergenicRegion 0 1.76 2.03 3.57 6.36 0.00 0.00 6.18 9.79 12.66 11.66 9.02 0.00 5.08 1.49 0.97 1.98 3.30 4.31 4.78 3.90 0.00 0.69 6.36