Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ELAVL1 Gene 0 23.65 48.43 28.38 18.81 24.09 23.01 34.20 30.88 24.07 46.69 122.15 61.24 36.97 120.23 85.18 84.06 100.04 73.45 43.41 72.32 54.59 43.79 39.22 2 407627 Transcript 0 7.85 15.97 11.35 6.99 0.45 3.76 2.20 6.92 5.51 12.11 68.64 3.08 14.25 47.61 40.38 34.76 30.44 20.24 16.29 30.13 56.59 15.51 20.25 3 351593 Transcript 0 0.00 0.14 0.25 0.02 1.13 0.00 0.52 0.05 0.03 0.11 0.37 0.00 0.22 0.20 2.03 0.05 0.05 0.00 1.23 1.03 0.90 0.03 2.42 4 ER1a ExonRegion 0 5.40 5.04 2.30 1.20 0.90 2.87 2.15 2.01 2.22 3.34 28.56 0.46 3.82 22.89 12.64 13.46 8.53 11.25 17.34 8.10 27.19 3.71 7.47 5 E1a_E3a KnownJunction 0 10.30 26.90 20.40 12.79 0.00 4.66 2.25 11.83 8.80 20.87 108.71 5.70 24.67 72.34 68.11 56.05 52.36 29.22 15.25 52.16 85.99 27.31 33.04 6 ER2a ExonRegion 0 0.00 0.28 0.51 0.04 2.26 0.00 1.04 0.11 0.06 0.21 0.74 0.00 0.43 0.40 4.06 0.09 0.10 0.00 2.45 2.06 1.80 0.06 4.83 7 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 E3_Aa NovelBoundary 0 10.82 0.00 3.76 6.76 0.00 0.00 12.45 6.61 2.69 5.99 0.00 6.30 6.82 2.47 4.45 0.00 0.00 1.78 0.00 5.18 0.00 0.00 4.18 9 ER3a ExonRegion 0 43.41 60.50 101.45 58.02 27.78 37.81 49.07 96.43 76.50 132.98 626.56 425.23 179.17 412.41 288.69 266.34 451.96 234.54 131.01 257.79 249.46 150.19 110.86 10 E3_Da NovelBoundary 0 34.45 24.34 20.37 26.67 81.24 5.56 23.54 24.32 15.57 30.14 12.85 12.15 24.84 21.90 8.90 4.02 22.53 12.77 25.13 14.76 5.37 2.51 8.02 11 E3a_E4a KnownJunction 0 63.86 73.47 127.97 79.21 64.01 75.07 102.55 124.82 107.17 245.84 946.40 549.63 198.85 755.73 441.07 383.83 789.62 289.88 208.29 446.72 385.49 210.46 143.75 12 Ix Intron 0 7.60 6.48 14.21 5.17 6.06 3.30 11.59 11.18 9.94 11.75 14.34 8.15 6.52 7.00 9.54 6.81 10.65 21.21 13.80 20.77 10.14 3.58 7.59 13 Ix_AR5 ActiveIntronRegion 0 16.34 11.91 21.63 11.06 9.73 3.68 19.67 15.81 11.94 20.00 25.64 14.40 8.09 12.79 15.47 9.84 19.36 29.07 19.32 35.19 9.26 4.59 9.27 14 Ix_SR3 SilentIntronRegion 0 11.64 11.11 18.20 8.55 14.72 5.88 24.87 19.13 15.90 17.46 25.50 25.20 17.90 11.22 12.32 9.49 14.40 21.90 24.48 27.75 12.68 6.46 9.77 15 Ix_AR4 ActiveIntronRegion 0 12.06 11.39 19.10 6.55 5.39 3.98 15.27 17.84 11.95 14.43 18.19 17.55 19.42 8.79 17.24 11.08 17.24 31.80 20.72 33.07 17.04 4.23 9.54 16 Ix_SR2 SilentIntronRegion 0 4.25 3.94 13.81 3.29 3.66 2.92 7.91 8.81 8.58 9.40 12.22 3.37 2.96 6.40 8.12 6.07 8.88 21.09 11.73 18.37 9.53 3.37 7.15 17 Ix_AR3 ActiveIntronRegion 0 8.47 1.95 18.86 6.99 2.68 5.42 12.84 20.22 13.96 13.16 17.65 0.00 0.00 12.00 13.88 10.98 0.00 27.56 6.92 33.49 18.59 3.99 9.58 18 Ix_AR2 ActiveIntronRegion 0 6.23 3.59 19.03 5.77 6.30 7.01 9.58 16.88 13.73 14.30 19.78 0.00 1.38 4.68 7.00 7.87 4.08 28.69 7.31 28.29 23.85 6.13 9.33 19 Ix_AR1 ActiveIntronRegion 0 7.83 9.92 16.96 8.38 7.57 3.73 10.35 13.58 13.83 14.31 18.78 1.38 1.71 8.16 11.10 6.86 7.48 23.80 13.49 19.83 13.74 3.14 6.15 20 ER4a ExonRegion 0 39.40 73.62 139.02 79.99 58.63 57.66 76.57 153.15 121.81 235.71 932.88 586.48 212.81 727.34 502.08 443.99 733.02 418.62 181.60 423.51 415.67 274.12 191.81 21 E4_Da NovelBoundary 0 40.30 12.96 10.35 18.31 6.62 5.05 20.18 23.82 4.54 43.62 4.84 49.82 34.41 7.71 44.13 21.02 44.41 73.17 32.66 40.08 11.61 24.13 24.33 22 E4a_E5a KnownJunction 0 32.75 73.08 139.73 91.30 115.62 45.66 99.94 143.14 145.83 234.48 892.86 681.07 286.34 838.55 537.49 503.71 819.35 466.81 163.02 347.39 437.69 192.52 217.68 23 Ix Intron 0 7.04 4.76 8.90 5.54 4.66 4.23 8.41 8.43 9.36 12.57 7.05 5.33 6.56 10.08 16.74 19.34 17.48 33.32 16.70 19.24 18.99 7.44 13.95 24 Ix_SR3 SilentIntronRegion 0 6.78 3.37 8.68 5.49 3.16 3.95 7.01 6.75 9.63 13.30 5.41 8.49 11.02 9.30 18.10 18.77 19.80 34.72 17.15 18.49 21.26 6.29 15.18 25 Ix_AR3 ActiveIntronRegion 0 7.91 6.01 7.99 3.94 3.10 7.08 8.87 12.91 11.97 16.39 6.33 2.70 3.07 11.36 15.39 15.85 18.54 34.83 17.10 23.63 17.19 10.63 15.57 26 Ix_SR2 SilentIntronRegion 0 5.78 4.50 9.48 5.47 7.11 3.56 10.18 7.29 8.88 10.93 9.04 4.43 4.75 11.00 17.07 23.56 17.41 36.94 16.55 21.22 19.60 7.08 13.27 27 Ix_AR2 ActiveIntronRegion 0 10.86 8.19 10.47 9.17 5.23 2.86 7.83 10.44 6.88 10.47 8.26 3.45 4.99 8.98 16.06 17.12 11.26 20.68 17.28 11.15 15.86 7.71 11.36 28 E5_Aa NovelBoundary 0 13.85 15.79 24.95 21.64 19.44 23.23 25.13 12.94 8.36 18.32 0.00 12.30 6.17 26.96 14.34 37.17 11.78 56.09 24.38 26.01 14.58 16.47 20.40 29 ER5a ExonRegion 0 50.08 61.97 136.21 81.39 45.90 59.49 79.16 141.28 120.70 247.58 834.21 412.17 241.99 849.12 583.91 626.23 725.28 494.67 242.63 395.69 404.28 295.94 287.54 30 E5_Da NovelBoundary 0 0.00 6.51 6.09 13.32 0.00 2.44 11.88 30.81 19.68 13.57 9.48 0.00 0.00 21.90 0.00 38.62 26.74 37.35 8.28 24.86 20.20 0.00 6.66 31 E5a_E6a KnownJunction 0 134.76 100.05 130.57 71.59 63.92 71.55 97.56 122.48 136.08 198.13 847.32 343.01 305.01 802.29 624.64 788.08 762.04 402.93 221.47 319.65 379.56 287.25 296.55 32 E5a_E7a NovelJunction 0 5.78 8.16 6.03 1.47 0.00 20.44 9.41 10.10 9.81 15.71 15.37 0.00 0.00 21.54 9.64 10.94 15.33 26.90 45.18 19.94 19.21 13.47 14.51 33 Ix Intron 0 13.89 15.58 22.32 13.46 11.02 6.57 14.51 18.68 14.15 23.42 16.41 8.84 11.18 17.10 20.73 26.74 23.23 47.49 18.15 24.63 19.63 8.53 14.82 34 Ix_SR3 SilentIntronRegion 0 11.47 15.94 27.67 14.64 9.45 7.03 13.32 19.09 15.31 25.38 14.33 5.85 7.32 16.83 20.96 29.29 21.47 52.35 16.06 25.59 18.55 8.20 14.29 35 Ix_AR4 ActiveIntronRegion 0 21.15 21.93 19.49 13.34 23.66 8.40 23.90 20.87 13.41 20.88 14.85 19.05 29.26 17.08 20.52 26.58 28.64 36.52 24.32 23.82 18.57 10.50 16.81 36 Ix_SR2 SilentIntronRegion 0 26.17 25.07 26.99 15.07 8.57 5.11 14.16 32.68 12.74 24.96 23.68 14.32 6.56 14.86 20.18 30.63 34.92 54.19 17.85 27.03 21.11 2.89 19.99 37 Ix_AR3 ActiveIntronRegion 0 14.94 16.56 13.91 12.66 10.68 6.65 12.72 17.46 12.34 22.29 16.83 7.63 5.28 18.15 20.67 24.40 23.83 32.57 13.30 25.82 18.35 7.17 14.22 38 Ix_AR2 ActiveIntronRegion 0 14.29 9.66 16.44 13.52 5.35 11.00 10.70 25.35 15.85 19.21 11.92 8.66 4.69 27.61 20.79 52.26 26.13 71.45 32.12 31.38 21.30 9.72 23.98 39 Ix_SR1 SilentIntronRegion 0 13.07 10.25 18.84 8.23 7.86 4.36 13.26 17.82 12.66 21.83 18.34 8.09 12.09 18.42 19.76 23.57 23.75 54.15 17.22 24.09 24.99 9.40 15.59 40 Ix_AR1 ActiveIntronRegion 0 16.93 14.32 12.22 16.67 13.65 6.47 15.98 14.44 13.58 19.84 22.64 15.28 18.90 15.60 21.54 20.70 23.08 35.16 28.05 20.02 18.00 9.37 13.73 41 E6_Aa NovelBoundary 0 13.26 16.38 10.11 18.68 34.97 2.84 25.13 15.12 18.43 14.08 14.27 12.60 21.59 19.13 32.63 26.32 23.19 34.74 27.29 11.38 13.84 2.39 20.91 42 ER6a ExonRegion 0 140.52 131.35 157.69 82.37 89.98 96.30 146.54 157.34 132.08 246.98 888.15 336.84 315.31 851.07 615.63 691.66 736.67 552.35 275.03 404.45 376.02 306.91 307.29 43 E6_Da NovelBoundary 0 9.19 6.18 10.61 7.82 4.24 2.33 7.38 4.68 10.16 10.15 14.27 12.15 0.00 9.48 4.33 14.36 31.79 44.44 3.48 10.61 8.96 16.35 7.77 44 E6a_E7a KnownJunction 0 120.10 140.37 174.21 90.53 105.01 102.10 160.22 145.36 109.58 189.11 757.82 241.88 328.23 849.91 597.07 623.43 602.52 457.89 233.14 398.65 350.40 364.65 304.49 45 Ix Intron 0 12.53 6.77 9.12 5.84 9.68 6.07 15.35 9.74 9.35 10.15 11.96 5.87 9.06 14.21 13.16 17.96 14.73 22.75 11.53 18.32 16.98 8.99 12.50 46 Ix_AR10 ActiveIntronRegion 0 8.53 5.01 7.14 3.49 7.99 3.73 11.25 8.29 7.35 6.37 12.38 3.33 5.32 9.04 10.56 15.55 12.63 25.09 16.38 19.39 13.69 6.72 14.12 47 Ix_AR9 ActiveIntronRegion 0 13.44 6.88 9.55 8.88 12.05 7.88 17.96 10.48 10.56 10.17 13.94 6.32 12.45 19.29 18.08 17.79 17.35 22.72 15.01 21.46 23.73 7.32 17.76 48 Ix_SR2 SilentIntronRegion 0 0.52 3.69 5.65 0.36 3.28 1.09 10.48 3.70 4.97 6.39 4.85 0.00 0.00 12.56 17.47 19.17 7.14 20.82 9.36 14.11 16.33 6.04 8.45 49 Ix_AR2 ActiveIntronRegion 0 12.89 8.28 10.75 5.34 13.15 7.15 19.84 10.15 8.30 12.67 10.52 11.80 8.55 14.05 14.71 21.01 19.16 24.08 9.34 16.79 14.77 12.96 12.78 50 Ix_SR1 SilentIntronRegion 0 11.61 7.41 11.43 6.02 14.24 6.07 18.30 12.77 15.69 10.05 15.38 5.08 10.84 12.78 15.84 21.84 14.79 32.95 14.01 27.18 17.01 11.38 11.14 51 Ix_AR1 ActiveIntronRegion 0 19.44 5.44 11.74 7.38 7.02 5.76 11.53 11.69 11.15 13.74 13.09 4.84 7.57 10.42 13.15 21.41 13.92 30.70 13.74 19.82 22.72 9.21 10.64 52 E7_Aa NovelBoundary 0 6.45 15.52 11.03 6.36 4.33 7.78 11.97 11.75 5.90 5.56 8.69 6.15 6.82 24.19 22.25 25.12 3.93 22.14 7.81 24.48 12.48 5.27 3.59 53 ER7a ExonRegion 0 17.62 45.37 15.90 12.34 20.73 18.42 27.99 18.60 13.67 27.10 38.11 18.02 11.73 48.97 35.11 31.25 32.82 30.44 22.92 37.55 17.70 18.31 16.07