Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 APBA3 Gene 0 22.52 9.29 52.51 30.40 12.57 19.07 8.82 32.93 25.58 48.59 71.38 11.65 19.31 96.91 119.15 66.56 68.38 37.30 35.50 19.85 44.87 28.46 33.95 2 316757 Transcript 0 26.56 10.58 54.90 29.07 16.40 25.86 12.94 35.28 25.67 50.60 83.63 17.14 15.94 112.83 126.23 81.36 92.22 42.11 42.95 23.94 48.85 28.86 47.39 3 439726 Transcript 0 11.82 3.13 6.12 3.49 2.61 6.49 1.53 4.42 5.17 5.63 8.43 0.72 2.53 16.08 15.30 10.80 12.46 8.45 4.54 2.19 6.48 4.82 3.43 4 ER1a ExonRegion 1 28.56 13.33 21.70 6.97 17.91 23.43 15.30 8.63 8.85 18.92 40.02 4.08 0.00 36.65 59.12 66.96 51.78 15.96 30.15 10.29 28.22 19.81 32.49 5 E1a_E2a KnownJunction 0 5.85 0.00 45.44 7.23 7.64 14.93 5.79 20.04 14.73 26.22 47.12 0.00 0.00 13.95 34.86 27.09 40.77 3.73 7.81 7.86 27.99 9.06 3.93 6 ER2a ExonRegion 0 26.30 14.14 80.60 48.09 16.87 25.69 12.32 50.21 36.97 70.34 106.82 14.42 17.80 136.34 147.71 93.02 97.19 61.47 54.54 25.43 66.51 42.72 49.13 7 E2_Da NovelBoundary 0 22.74 21.97 28.41 24.31 8.32 15.45 6.32 19.22 14.53 26.14 10.16 0.00 0.00 40.56 23.61 7.86 17.11 24.13 11.58 17.71 23.17 18.98 18.27 8 E2a_E3a KnownJunction 1 14.52 13.75 62.59 17.65 24.87 14.71 6.76 18.85 14.61 51.55 99.13 18.16 6.66 93.59 134.25 50.67 115.29 27.73 40.10 22.88 57.08 25.29 15.11 9 Ix Intron 0 8.59 5.89 2.12 2.35 0.00 3.19 1.53 1.49 0.00 0.99 17.92 0.00 2.24 24.42 15.13 6.89 7.65 4.26 22.15 4.93 5.11 2.41 3.40 10 Ix_AR1 ActiveIntronRegion 0 9.89 6.53 2.24 2.58 0.00 3.55 1.72 1.52 0.00 1.07 20.12 0.00 2.59 26.54 17.14 7.98 8.86 4.74 23.68 5.43 5.80 2.69 3.94 11 E3_Aa NovelBoundary 0 10.37 14.80 41.36 27.47 10.87 30.95 10.78 22.63 17.27 34.44 47.06 6.00 6.49 45.44 44.38 51.18 17.30 25.83 50.07 24.74 20.70 24.00 36.45 12 Ix_SR1 SilentIntronRegion 0 0.60 2.91 2.10 1.36 0.00 1.57 0.57 1.73 0.00 0.82 5.80 0.00 0.00 16.47 4.14 0.00 0.00 2.11 15.93 2.13 1.26 1.19 0.00 13 ER3a ExonRegion 0 12.22 5.39 36.24 13.63 11.44 12.38 18.37 24.33 15.59 47.31 77.85 9.52 11.14 126.03 133.09 56.84 100.59 32.84 29.86 28.03 35.37 23.54 46.91 14 E3_Da NovelBoundary 0 6.37 9.93 18.75 19.11 19.19 20.90 18.42 11.21 7.96 16.36 14.32 0.00 0.00 59.10 28.80 26.32 29.08 26.45 16.09 12.34 25.82 23.02 19.89 15 E3a_E4a KnownJunction 0 10.52 9.21 26.46 15.15 4.33 13.86 26.67 32.65 14.64 38.82 75.60 12.15 5.84 133.03 126.46 86.22 90.23 37.64 15.72 31.96 42.26 16.59 79.05 16 Ix Intron 0 7.42 7.19 17.12 14.89 14.22 8.30 6.26 8.50 8.66 11.43 10.67 8.44 7.59 18.86 18.14 16.93 9.26 9.90 12.65 6.40 7.53 7.00 9.69 17 Ix_SR1 SilentIntronRegion 0 8.02 6.53 18.20 12.38 15.65 8.61 7.52 10.19 7.73 14.06 11.31 10.85 7.98 23.03 23.27 17.39 10.60 9.46 17.06 8.05 8.34 6.17 11.86 18 Ix_AR1 ActiveIntronRegion 0 7.11 7.57 16.59 16.32 13.49 8.16 5.59 7.60 9.20 10.01 10.36 7.12 7.40 16.63 15.38 16.74 8.54 10.18 10.27 5.51 7.11 7.48 8.54 19 E4_Aa NovelBoundary 0 38.90 12.63 34.50 25.27 12.65 4.60 1.68 12.28 11.40 19.45 7.32 6.30 0.00 24.60 41.04 20.25 4.77 19.90 12.89 11.57 20.20 6.12 3.67 20 ER4a ExonRegion 0 34.79 9.30 59.72 37.91 17.59 21.74 14.84 42.95 30.68 67.00 96.39 14.95 33.41 152.92 171.95 113.14 116.37 59.39 48.11 24.38 56.32 34.18 50.08 21 E4a_E5a KnownJunction 0 20.08 4.93 66.11 22.37 11.97 37.14 15.81 52.57 24.71 39.06 77.55 41.86 14.12 125.14 150.94 65.20 79.76 33.87 21.84 38.61 30.09 30.74 30.39 22 E5_Aa NovelBoundary 0 13.26 2.76 22.06 5.83 3.23 8.40 0.00 2.05 2.63 29.84 7.16 0.00 13.15 12.48 8.90 7.52 8.23 19.77 4.80 0.00 5.31 2.45 3.24 23 ER5a ExonRegion 0 32.96 9.96 63.80 35.28 14.42 39.90 13.85 46.37 35.09 66.43 115.04 22.10 23.07 145.27 144.60 118.71 126.34 71.62 58.22 34.21 60.51 37.36 75.48 24 E5a_E6a KnownJunction 0 58.31 27.43 83.82 52.61 48.98 36.57 20.45 54.67 49.22 73.15 136.72 18.31 47.56 183.53 192.60 163.89 165.12 84.11 120.19 30.74 79.75 49.97 112.17 25 ER6a ExonRegion 0 24.69 7.17 47.90 25.04 9.60 16.57 8.71 23.80 21.55 47.35 67.99 17.29 33.93 93.95 134.87 66.30 72.07 30.23 47.54 17.77 46.37 31.66 32.99 26 E6_Da NovelBoundary 0 14.08 5.99 9.31 8.79 3.65 2.61 0.00 15.12 1.79 3.22 5.26 0.00 0.00 7.18 17.80 4.36 4.11 11.36 0.00 6.39 12.48 5.57 0.00 27 E6a_E7b KnownJunction 1 43.19 9.93 54.34 45.58 14.60 39.92 9.32 37.58 36.95 56.89 62.91 26.56 13.64 94.94 10.63 43.15 59.37 48.87 52.05 9.08 52.88 26.09 57.36 28 Ix Intron 0 14.45 1.57 6.58 4.19 6.20 6.14 1.19 3.98 4.50 5.28 7.47 2.85 6.40 12.51 19.17 12.25 9.35 8.63 4.51 1.92 4.54 8.06 3.78 29 Ix_AR1 ActiveIntronRegion 0 14.52 1.58 6.62 4.21 6.23 6.17 1.20 4.00 4.53 5.31 7.51 2.87 6.43 12.58 19.26 12.30 9.40 8.68 4.54 1.93 4.56 8.10 3.80 30 E7_Aa NovelBoundary 0 21.26 2.76 10.35 4.49 4.07 2.73 6.32 1.52 7.44 6.80 2.26 0.00 0.00 31.26 18.54 7.52 9.26 6.72 0.00 3.26 3.03 5.14 4.35 31 ER7a ExonRegion 0 10.64 1.56 1.91 1.70 0.88 6.61 1.05 2.44 3.16 4.08 8.79 0.42 3.15 13.84 13.39 10.22 7.82 5.06 4.23 0.17 6.34 3.37 1.97 32 E7_Ab KnownBoundary 0 13.34 2.70 4.79 3.90 4.16 14.54 0.00 8.42 9.26 6.07 14.06 0.00 5.68 11.65 9.64 15.72 21.88 10.99 4.80 0.00 2.78 0.00 7.68 33 ER7b ExonRegion 0 23.90 7.51 60.69 30.42 9.41 23.38 5.79 38.50 35.26 63.07 59.42 11.66 23.31 101.26 105.86 60.53 45.34 31.51 27.38 19.20 45.03 18.98 31.70 34 E7a_E8a KnownJunction 0 33.56 3.16 51.30 29.53 20.46 43.90 5.79 26.82 37.93 37.39 51.80 5.85 47.24 132.97 91.11 55.63 66.57 39.96 24.09 14.57 34.97 16.96 35.34 35 ER8a ExonRegion 0 21.91 10.38 48.42 25.42 8.28 20.58 9.19 30.31 20.45 43.20 58.85 15.59 32.61 107.34 136.09 64.17 42.88 28.38 25.20 13.05 38.01 20.17 28.79 36 E8_Da NovelBoundary 0 11.34 8.88 24.84 8.62 15.96 2.90 6.23 12.98 6.97 12.41 7.63 0.00 0.00 16.30 33.87 7.95 4.77 13.76 4.52 0.00 0.00 6.18 8.11 37 E8a_E9a KnownJunction 0 9.48 6.45 33.77 32.30 0.00 0.00 4.28 26.29 21.64 36.24 60.07 12.30 28.73 79.40 159.96 45.54 39.64 41.41 15.72 5.18 24.46 19.04 8.71 38 Ix Intron 0 17.07 4.05 25.05 14.47 6.16 7.87 8.46 12.41 10.60 20.59 12.35 6.43 8.26 17.07 28.49 16.50 10.02 11.06 11.67 7.13 9.92 5.45 12.30 39 Ix_AR1 ActiveIntronRegion 0 21.37 4.45 35.65 21.54 8.11 11.42 10.25 17.78 14.56 28.48 15.60 8.53 10.03 18.88 36.19 22.01 13.33 13.76 13.39 8.24 13.35 5.96 13.84 40 E9_Aa NovelBoundary 0 23.41 6.12 51.12 30.47 3.23 5.39 4.15 26.94 11.49 22.70 14.00 13.35 20.13 9.30 13.35 29.31 8.88 28.93 0.00 11.70 11.37 7.41 8.19 41 ER9a ExonRegion 0 31.57 6.08 48.73 33.80 6.96 14.99 1.82 36.64 20.83 53.76 64.38 11.91 19.42 94.09 166.31 69.10 62.22 37.54 34.91 23.92 41.67 22.10 22.15 42 E9_Da KnownBoundary 0 17.19 0.00 5.12 2.06 4.07 6.98 1.94 8.46 4.51 7.79 9.37 5.40 0.00 7.24 17.80 8.20 3.83 9.41 16.75 2.56 0.00 6.12 8.54 43 E9a_E9b KnownJunction 1 33.27 13.02 64.93 50.48 12.99 39.30 0.00 46.00 30.15 54.77 84.07 23.41 0.00 131.38 199.89 106.47 83.96 40.00 32.19 29.98 51.71 28.23 30.99 44 ER9b ExonRegion 0 13.00 4.71 10.32 5.28 4.33 6.37 2.00 6.40 7.18 7.18 8.06 1.03 1.92 18.31 17.21 11.38 17.10 11.84 4.85 4.21 6.61 6.27 4.89 45 E9_Ab KnownBoundary 0 0.00 3.03 16.82 7.36 8.66 9.37 1.77 6.70 11.26 6.39 5.00 0.00 0.00 16.19 17.80 16.32 0.00 12.81 0.00 2.56 2.97 10.78 4.10 46 ER9c ExonRegion 0 19.26 8.18 58.42 44.64 25.09 15.88 6.77 35.84 35.36 48.65 97.92 10.64 28.04 108.98 176.15 59.19 87.50 33.76 29.03 30.12 54.46 36.60 24.58 47 E9b_E10a KnownJunction 0 30.97 0.00 67.53 60.73 24.02 10.56 6.76 40.50 31.25 63.21 72.33 13.05 42.37 109.37 170.34 76.48 84.99 41.83 31.06 39.76 63.20 21.55 32.78 48 ER10a ExonRegion 0 8.16 4.83 33.08 17.62 7.47 6.57 3.03 19.87 16.50 25.45 36.15 6.58 11.52 39.06 61.64 20.38 31.27 11.67 15.76 15.95 24.79 21.34 15.97