Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC004410.1 Gene 0 72.92 29.53 183.37 76.53 44.80 52.14 29.40 123.49 153.51 137.51 125.08 36.96 56.24 180.93 182.12 192.48 103.07 211.46 121.27 92.15 119.51 67.22 78.69 2 382189 Transcript 0 0.70 1.82 11.92 5.09 2.86 3.46 1.67 8.25 11.12 10.73 6.16 2.53 1.56 12.01 13.08 7.85 6.19 7.35 5.87 4.93 7.48 9.78 8.09 3 432705 Transcript 0 7.40 3.31 17.74 7.51 7.72 6.77 5.15 16.60 20.67 18.83 13.04 5.82 6.25 26.32 26.38 24.89 12.92 32.39 21.12 12.61 13.93 7.67 11.08 4 320335 Transcript 0 8.06 0.00 10.04 1.82 3.95 0.96 2.08 3.54 4.59 6.01 18.50 1.65 11.39 35.27 41.86 24.63 12.73 13.29 9.40 3.44 5.77 4.46 6.85 5 452401 Transcript 0 172.12 68.84 310.21 111.49 69.43 95.12 42.09 179.58 182.14 167.82 144.22 35.62 70.92 196.67 186.29 230.93 141.01 260.35 153.33 95.79 167.95 99.02 117.82 6 ER1a ExonRegion 0 0.06 1.18 0.00 0.00 8.75 5.99 3.60 0.00 0.00 0.00 4.13 0.00 0.00 12.31 16.54 4.52 6.85 0.00 2.23 1.37 1.68 4.48 2.02 7 E1_Ab KnownBoundary 0 0.00 2.50 2.37 1.33 6.28 2.50 3.75 1.52 0.00 3.22 4.21 0.00 0.00 0.00 0.00 6.84 3.55 1.58 0.00 0.00 0.00 2.69 0.00 8 E1_Ac KnownBoundary 0 10.15 5.79 21.67 0.00 10.95 7.21 12.32 8.67 6.31 17.03 31.96 0.00 0.00 4.36 77.01 21.87 8.23 5.26 20.05 0.00 37.44 23.57 13.91 9 ER1b ExonRegion 1 3.93 1.89 0.88 0.00 6.88 4.58 4.16 0.00 0.00 0.00 25.68 0.00 0.00 4.52 64.24 7.64 7.31 5.68 0.91 1.22 15.27 14.73 5.24 10 ER1c ExonRegion 1 5.01 4.10 7.97 1.05 0.00 8.66 6.70 2.47 3.21 6.48 19.83 1.67 3.25 8.05 45.53 17.15 15.34 8.67 2.60 3.63 16.10 16.70 11.11 11 E1a_E2a KnownJunction 0 7.41 3.35 20.11 3.63 4.33 8.57 6.23 8.34 8.51 10.88 9.42 12.45 6.01 15.01 13.35 0.00 4.11 17.45 0.00 11.51 12.17 0.00 3.93 12 ER2a ExonRegion 1 8.82 4.83 72.95 12.27 4.97 5.30 3.87 35.04 68.67 62.10 106.84 8.51 14.54 88.18 80.94 65.24 87.64 71.06 48.76 52.02 98.23 30.30 36.68 13 E2a_E3a KnownJunction 1 11.34 5.59 137.84 33.93 15.62 12.95 6.62 70.03 124.68 105.30 83.34 0.00 19.48 171.99 170.22 212.68 89.76 206.02 234.45 85.46 77.22 87.01 135.98 14 ER3a ExonRegion 0 11.68 11.15 103.49 30.99 27.63 47.16 22.00 54.72 98.03 84.77 68.78 20.46 30.29 129.41 123.37 156.82 83.84 137.48 119.65 55.78 101.89 50.61 81.47 15 E3_Da NovelBoundary 0 3.78 15.52 34.39 19.44 7.64 8.63 10.51 22.96 30.99 28.93 44.01 0.00 12.82 34.85 51.05 59.81 50.40 66.74 20.05 21.92 37.87 9.12 8.19 16 E3a_E4a KnownJunction 0 15.56 41.97 76.40 31.30 14.01 70.87 37.85 51.01 108.71 66.21 51.59 37.21 19.80 70.22 62.92 22.56 46.47 87.67 76.80 22.31 89.08 41.03 16.22 17 Ix Intron 1 14.93 6.44 34.24 18.11 15.16 19.45 11.31 27.05 33.72 47.87 50.26 8.92 7.02 86.42 63.50 84.72 45.58 81.14 40.05 38.95 39.00 19.69 29.30 18 Ix_AR1 ActiveIntronRegion 0 14.96 6.45 34.31 18.14 15.19 19.49 11.33 27.10 33.79 47.96 50.35 8.93 7.04 86.58 63.61 84.87 45.66 81.29 40.12 39.03 39.07 19.72 29.36 19 E4_Aa NovelBoundary 0 38.08 16.44 52.63 19.05 15.70 13.34 18.99 40.25 31.31 62.53 34.06 6.30 12.99 109.42 63.04 88.69 43.67 110.68 35.86 26.85 32.31 23.09 34.06 20 ER4a ExonRegion 0 69.16 45.91 139.19 68.67 53.10 49.37 34.25 109.41 155.68 149.52 154.61 36.70 58.05 245.95 176.85 233.18 135.48 217.54 124.51 105.63 148.24 99.43 92.67 21 E4a_E5a KnownJunction 0 88.24 65.71 160.02 88.23 67.91 36.23 37.58 109.34 202.52 132.13 138.72 49.37 25.65 238.16 183.82 214.39 110.05 257.72 151.72 95.56 142.09 101.40 75.03 22 ER5a ExonRegion 0 50.51 30.85 127.09 70.89 29.51 32.14 24.07 107.82 169.75 133.75 142.39 39.49 54.71 190.53 183.17 199.68 122.11 206.82 124.37 104.15 136.05 81.09 77.55 23 E5_Da NovelBoundary 0 10.59 0.00 35.69 17.48 16.13 2.90 4.42 19.72 28.50 35.70 30.96 0.00 12.99 64.22 28.43 70.07 35.62 85.73 40.38 44.87 32.43 26.76 19.21 24 E5a_E6a KnownJunction 0 99.35 44.33 207.27 64.53 67.06 42.02 16.83 129.14 174.56 140.06 169.15 57.47 115.58 266.88 201.13 346.58 142.78 215.43 187.21 130.65 139.86 116.59 80.16 25 Ix Intron 0 9.34 1.68 21.48 7.84 7.38 11.80 5.60 17.99 24.02 27.48 20.07 4.17 4.94 36.64 25.56 34.69 22.14 52.07 30.15 27.37 29.75 14.17 19.43 26 Ix_SR1 SilentIntronRegion 0 8.93 0.94 20.18 7.24 8.39 13.07 6.17 18.93 24.02 27.20 21.76 4.15 5.35 38.39 25.50 35.56 23.72 53.52 31.56 31.95 29.74 15.97 20.65 27 Ix_AR1 ActiveIntronRegion 0 10.58 3.79 25.42 9.64 4.63 8.36 4.05 15.58 24.32 28.67 15.58 4.27 3.88 32.21 26.07 32.71 18.01 48.72 26.56 14.86 30.18 9.30 16.26 28 E6_Aa NovelBoundary 0 14.52 9.27 46.78 28.53 19.52 8.06 8.97 32.41 37.82 54.53 38.43 7.65 26.13 71.75 47.35 51.70 31.70 62.30 56.85 41.16 43.49 23.88 36.11 29 ER6a ExonRegion 0 39.84 33.71 216.19 115.84 30.98 42.49 30.58 173.19 232.91 185.39 188.05 59.21 77.15 228.70 223.42 232.75 135.31 267.44 135.62 134.69 178.27 85.19 92.17 30 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.86 0.00 0.00 0.00 0.00 0.00 31 E6b_E9a KnownJunction 1 48.90 41.51 206.94 115.54 44.06 51.22 40.67 158.42 183.27 195.58 173.68 11.40 19.32 154.75 89.75 224.64 154.09 360.35 175.35 117.86 155.62 42.56 73.07 32 E7a_E8a KnownJunction 0 0.00 0.00 8.60 3.56 0.00 0.00 1.99 3.78 3.10 3.71 0.00 0.00 0.00 0.00 0.00 3.93 0.00 2.57 8.66 0.00 5.56 2.82 0.00 33 ER6b ExonRegion 0 52.91 40.67 211.99 109.03 21.41 29.34 31.78 171.12 198.85 189.24 170.10 43.29 98.49 232.25 145.06 219.94 165.04 349.22 175.19 119.15 165.28 56.26 73.42 34 ER7a ExonRegion 0 0.00 0.00 1.06 0.00 0.00 0.00 1.24 0.00 0.00 0.76 0.00 0.00 0.00 2.60 0.00 2.97 0.00 4.56 7.43 0.43 3.38 0.00 0.00 35 ER8a ExonRegion 0 0.00 0.11 0.33 0.34 0.14 0.00 0.87 0.09 0.46 0.23 0.59 0.00 0.00 7.77 8.13 2.18 3.07 0.43 3.87 3.80 3.03 0.22 0.37 36 E8a_E9c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 ER9a ExonRegion 0 38.65 23.28 159.93 81.33 25.22 31.77 22.94 113.32 154.98 139.33 139.63 56.28 66.89 194.61 209.33 187.84 110.50 209.51 135.70 102.05 140.51 79.67 80.24 38 E9_Da NovelBoundary 0 10.30 5.99 96.63 31.73 3.99 5.34 7.91 74.22 59.43 74.52 16.69 0.00 7.47 0.00 0.00 19.91 17.20 53.56 30.78 14.51 17.48 5.88 0.00 39 E9a_E9b KnownJunction 0 24.89 12.63 203.10 118.33 4.07 10.90 6.36 168.28 157.58 147.71 32.85 0.00 7.79 14.13 17.80 61.52 22.44 152.59 27.11 52.16 56.34 70.54 49.17 40 E9b_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 ER9b ExonRegion 0 2.12 6.10 46.97 19.99 2.68 7.34 3.09 32.26 43.23 41.29 19.97 10.10 6.25 34.11 35.78 24.77 16.50 28.33 21.24 17.73 27.91 34.03 30.35 42 ER9c ExonRegion 0 3.17 2.03 101.09 45.66 4.01 7.34 3.31 83.83 84.61 87.74 27.06 12.99 18.76 28.42 52.22 32.69 14.85 47.12 25.48 32.98 30.85 30.21 32.30 43 ER9d ExonRegion 1 4.23 0.68 98.03 44.07 3.57 3.67 5.30 81.24 76.58 81.81 24.48 8.66 23.45 14.62 54.16 33.68 12.10 51.12 25.48 25.53 19.10 10.42 17.62 44 ER9e ExonRegion 1 7.14 3.81 111.66 56.39 10.70 8.71 7.45 90.53 85.99 89.89 45.66 12.99 29.90 32.69 76.52 52.76 30.95 70.21 30.66 36.70 31.40 20.31 31.57 45 ER10a ExonRegion 0 0.60 0.00 0.70 0.39 0.00 0.52 0.00 0.74 1.24 1.64 0.55 0.00 0.00 1.62 0.00 2.12 1.41 1.06 0.00 0.61 0.31 0.60 0.00 46 E11_Ab NovelBoundary 0 53.79 29.21 200.05 140.84 49.83 75.35 46.68 148.81 166.46 159.99 166.99 19.21 65.58 223.79 206.32 225.67 143.62 265.92 122.45 135.82 162.66 91.67 106.79 47 ER11a ExonRegion 0 20.44 13.15 140.61 79.22 22.74 38.91 22.55 102.14 101.32 114.05 97.43 17.99 52.47 131.91 167.18 130.77 74.37 110.52 75.65 94.81 95.72 59.18 63.78 48 ER11b ExonRegion 0 65.11 36.01 176.02 109.83 46.94 74.30 40.86 120.81 147.17 157.17 126.39 31.38 64.50 223.10 243.26 208.96 110.37 238.25 126.37 120.85 140.49 79.37 95.35 49 E11_Da KnownBoundary 0 18.67 21.25 67.86 25.54 20.20 22.94 12.32 46.33 65.83 50.07 25.69 7.35 34.90 42.38 43.02 61.44 37.68 130.08 74.64 30.55 48.06 26.27 51.64 50 E11a_E12a KnownJunction 0 51.34 35.32 97.36 81.08 46.69 43.04 16.96 105.35 90.10 116.90 114.03 35.56 48.21 112.60 149.08 161.75 90.98 102.27 57.04 69.54 97.11 44.70 46.61 51 E11_Db KnownBoundary 0 2.96 6.12 21.50 7.42 30.56 18.80 12.14 17.13 36.92 21.57 11.42 20.71 0.00 43.32 33.75 74.42 16.74 54.97 33.70 17.19 36.76 13.53 23.05 52 ER11c ExonRegion 0 23.28 21.35 68.93 24.87 34.78 29.34 21.18 61.36 81.52 63.08 43.01 50.87 42.21 126.28 140.71 118.89 54.46 194.48 106.71 44.68 80.99 34.38 73.42 53 ER11d ExonRegion 0 44.42 19.78 96.44 41.16 46.18 40.64 26.79 95.71 120.48 108.29 77.66 34.90 37.52 147.55 150.13 140.27 74.46 182.96 106.73 71.42 71.62 43.00 66.09 54 E11_Dc NovelBoundary 0 178.77 74.86 127.35 44.65 188.71 73.03 100.96 116.40 172.05 119.59 157.36 185.31 206.80 252.40 199.52 397.50 127.44 159.76 201.32 107.57 148.70 123.63 122.15 55 Ix Intron 1 50.53 16.66 78.32 24.48 27.09 27.07 18.72 51.35 67.42 64.85 44.81 16.22 14.79 81.02 86.43 79.69 47.70 90.84 59.81 52.12 43.58 31.72 32.23 56 Ix_AR1 ActiveIntronRegion 0 38.71 20.07 48.74 15.88 29.81 27.50 18.87 41.03 54.49 52.62 38.20 20.37 17.60 69.01 79.57 64.15 46.85 45.74 54.14 44.94 38.96 27.82 28.36 57 Ix_AR2 ActiveIntronRegion 0 74.61 10.00 138.30 41.95 21.89 26.38 18.56 72.53 94.05 90.00 58.52 8.09 9.36 105.73 100.82 111.61 49.91 181.93 71.88 67.04 53.21 39.82 40.34 58 E12_Aa NovelBoundary 1 129.13 26.84 279.29 62.30 47.62 37.36 32.59 164.46 179.48 159.05 111.50 6.30 6.82 148.86 174.18 147.06 96.31 201.75 100.99 140.68 85.44 48.50 65.05 59 ER12a ExonRegion 0 143.67 59.44 255.95 124.16 96.46 92.18 49.58 185.41 213.58 195.97 230.20 58.76 70.06 247.74 262.85 337.08 138.11 324.17 181.18 158.04 159.61 102.17 119.72 60 E12a_E13a KnownJunction 0 240.86 70.45 472.87 211.40 137.69 90.80 80.11 272.69 360.50 260.29 234.69 64.37 90.90 305.55 305.09 354.78 149.13 486.08 238.22 213.29 166.37 174.33 120.96 61 ER13a ExonRegion 0 260.13 59.84 422.18 195.87 94.22 81.08 62.49 246.34 302.41 250.71 277.59 55.24 71.66 308.04 350.39 353.56 176.00 447.67 217.28 208.82 217.29 122.07 110.65 62 E13a_E14a KnownJunction 0 301.24 54.86 427.13 180.33 77.16 84.33 87.53 251.21 250.34 260.99 261.43 87.03 97.07 287.95 306.20 309.32 157.27 287.89 178.73 207.79 193.24 122.90 61.55 63 ER14a ExonRegion 0 221.83 50.00 397.27 137.20 65.58 75.91 49.79 238.44 272.45 260.71 202.59 40.41 98.27 255.06 293.99 301.41 157.45 302.15 158.41 173.35 204.07 123.39 95.51 64 E14a_E15a KnownJunction 0 238.78 68.47 476.06 160.79 92.19 77.29 64.43 282.92 326.79 290.06 252.91 69.32 134.08 304.49 343.90 421.26 192.15 413.12 205.75 184.91 259.65 126.51 163.30 65 ER15a ExonRegion 0 182.89 62.47 527.40 191.81 107.97 115.93 52.16 282.93 329.08 286.97 290.77 67.28 118.14 357.35 342.99 406.17 204.06 396.23 195.96 193.70 273.13 125.45 121.93 66 E15a_E16a KnownJunction 0 176.18 67.55 632.18 236.67 122.67 165.36 63.42 342.60 369.12 290.40 227.22 53.42 72.40 276.06 296.56 266.94 194.86 293.74 143.06 187.85 239.94 102.26 71.53 67 ER16a ExonRegion 0 210.81 52.22 517.47 199.45 94.30 118.04 50.09 291.29 353.77 300.03 214.20 66.16 96.15 323.01 279.52 363.86 200.30 341.64 206.76 153.60 230.15 139.76 139.08 68 E16_Da NovelBoundary 0 51.64 9.54 30.37 19.54 15.62 2.78 18.81 59.27 27.20 55.42 35.22 7.65 19.80 29.61 19.16 34.18 30.48 46.34 18.82 20.01 11.55 18.25 12.55 69 E16a_E17a KnownJunction 0 222.11 54.33 610.80 225.81 110.10 132.48 47.21 305.88 401.15 323.98 220.90 71.12 155.83 368.77 400.89 519.61 234.78 536.41 262.22 137.49 217.02 144.76 166.80 70 Ix Intron 0 22.75 6.01 12.94 11.60 11.59 5.49 8.45 10.65 11.67 10.77 8.45 5.67 7.80 12.54 12.91 13.69 8.58 23.98 8.66 10.31 7.73 5.25 5.20 71 Ix_AR3 ActiveIntronRegion 0 32.08 7.13 10.78 8.09 18.34 4.99 12.24 7.83 14.41 12.54 15.71 9.90 11.84 22.47 26.08 19.41 9.47 21.61 12.69 13.56 10.90 7.64 6.13 72 Ix_SR4 SilentIntronRegion 0 36.76 8.24 12.31 11.66 14.46 8.96 14.76 14.32 13.01 12.11 7.83 7.35 14.75 15.46 10.12 17.57 11.71 16.81 8.07 12.22 10.79 5.98 5.41 73 ER17a ExonRegion 0 122.92 60.51 461.65 195.80 66.35 86.63 43.02 249.87 297.81 259.28 231.34 61.58 134.58 322.22 310.56 373.31 187.02 475.58 211.90 137.73 222.23 126.76 142.11 74 E17_Da NovelBoundary 0 23.71 2.96 71.85 10.65 11.88 2.38 4.06 44.07 41.06 45.42 55.75 30.01 20.45 90.47 118.92 102.20 50.58 74.70 39.72 28.38 36.70 17.64 31.33 75 E17a_E18a KnownJunction 0 202.18 89.85 349.37 131.95 93.89 98.86 47.12 208.33 217.79 184.94 138.25 30.46 48.37 183.41 152.54 216.87 166.81 311.07 159.63 99.33 189.78 112.36 137.52 76 E17_Db NovelBoundary 0 58.60 0.00 67.30 36.76 40.41 8.35 8.44 34.95 36.11 49.67 62.86 12.60 13.64 124.08 74.79 90.75 42.82 94.47 41.60 24.48 26.63 14.76 37.82 77 ER17b ExonRegion 0 8.06 0.00 10.04 1.82 3.95 0.96 2.08 3.54 4.59 6.01 18.50 1.65 11.39 35.27 41.86 24.63 12.73 13.29 9.40 3.44 5.77 4.46 6.85 78 Ix_AR2 ActiveIntronRegion 0 22.07 5.82 49.85 14.34 8.09 13.51 5.90 16.46 14.03 17.94 12.82 1.90 7.04 24.78 20.31 25.32 18.40 35.83 16.68 4.70 8.29 8.14 5.14 79 Ix_SR2 SilentIntronRegion 0 11.43 3.64 44.28 10.41 6.66 5.77 0.96 16.47 9.59 24.05 11.27 2.66 5.70 17.64 13.36 28.95 13.25 44.97 19.78 9.55 7.54 8.61 5.40 80 E18_Aa NovelBoundary 0 30.38 14.54 58.01 9.59 7.13 24.30 14.40 14.05 5.67 13.89 9.90 0.00 5.84 17.25 14.59 30.33 8.88 19.11 3.67 3.26 0.00 12.49 7.43 81 ER18a ExonRegion 0 142.06 47.84 271.05 91.02 44.97 91.37 37.06 150.83 146.48 150.69 150.20 40.79 93.46 209.92 220.03 244.99 115.22 209.64 147.03 92.25 146.11 85.68 98.12