Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	SMAD4	Gene	0	70.44	170.88	189.56	161.88	195.31	203.11	192.28	119.22	100.45	166.39	79.66	109.11	81.89	81.97	59.70	73.70	73.47	114.81	77.67	129.57	64.93	126.03	80.31
2	342988	Transcript	1	0.82	6.69	6.28	3.42	5.33	24.59	16.27	3.17	8.69	12.94	30.85	2.69	1.71	50.09	12.85	22.23	30.14	32.80	14.25	30.99	42.27	16.31	26.65
3	452201	Transcript	0	2.61	1.83	0.31	0.00	12.14	2.97	10.01	0.67	0.00	0.46	2.50	6.49	14.47	3.77	1.74	4.87	7.75	0.76	1.26	4.00	1.12	6.01	2.39
4	398417	Transcript	0	8.11	32.20	14.09	12.38	20.29	54.40	31.78	13.68	17.91	27.24	16.43	3.25	10.55	23.14	5.80	23.28	27.23	32.34	11.15	40.43	24.98	21.53	19.58
5	IG14_SR3	SilentIntergenicRegion	0	4.49	11.00	11.14	9.95	12.42	14.17	6.44	19.56	16.49	14.45	7.72	20.61	7.57	11.76	4.66	7.93	6.70	6.57	5.47	8.72	3.46	4.66	7.28
6	IG14_AR4	ActiveIntergenicRegion	0	0.05	8.60	11.57	5.53	10.46	8.65	3.82	12.84	16.02	10.03	5.30	14.74	4.05	15.26	4.21	5.45	3.55	4.23	5.11	7.80	2.56	2.89	3.72
7	ER1a	ExonRegion	1	0.20	0.26	1.86	0.75	2.93	18.52	14.82	0.06	2.27	1.78	20.14	3.63	0.00	42.38	11.14	8.15	15.33	7.09	4.32	17.71	19.41	7.93	10.99
8	ER1b	ExonRegion	1	4.07	4.28	8.25	3.11	8.99	57.55	26.82	6.56	13.76	29.51	59.75	2.44	2.53	71.34	16.51	34.41	64.88	44.75	13.88	59.25	69.61	16.99	43.64
9	E1_Da	KnownBoundary	0	0.00	2.96	5.47	2.06	3.48	12.32	1.72	9.32	5.87	16.76	12.95	13.35	0.00	7.77	0.00	14.53	3.93	58.20	7.44	11.06	22.92	2.57	11.18
10	ER1c	ExonRegion	1	1.43	13.12	10.70	6.10	7.72	30.67	17.71	6.28	15.11	24.10	41.56	1.74	3.42	57.80	14.56	36.31	44.94	58.51	24.19	44.28	65.14	24.69	42.30
11	E1b_E2b	KnownJunction	1	10.89	82.16	41.16	42.98	59.42	184.27	127.76	50.73	74.30	108.09	59.07	6.30	40.74	107.07	22.87	79.89	120.34	138.66	49.22	146.11	92.48	83.40	73.33
12	ER1d	ExonRegion	1	7.81	63.82	39.31	32.60	40.03	165.32	97.77	39.36	60.52	88.58	57.24	5.33	21.29	93.20	31.69	97.39	86.97	133.04	45.94	118.98	105.69	89.67	73.75
13	I1_SR2	SilentIntronRegion	0	3.70	7.09	7.49	7.37	9.29	4.77	19.07	9.91	5.59	6.63	2.90	14.96	18.19	1.68	3.93	2.06	2.50	0.82	3.13	7.36	0.51	2.64	3.43
14	I1_SR3	SilentIntronRegion	0	4.23	0.00	22.06	13.63	5.35	12.23	16.11	18.44	9.26	13.38	3.87	8.66	25.01	1.62	5.80	0.00	9.35	3.70	16.99	13.83	2.20	0.00	3.43
15	I1_AR3	ActiveIntronRegion	0	5.47	2.29	23.74	11.47	6.91	19.71	17.10	19.09	8.90	9.99	3.38	14.79	17.98	3.52	5.56	0.00	8.11	5.24	9.56	12.15	2.57	0.00	3.18
16	I1_AR4	ActiveIntronRegion	0	7.94	16.27	27.26	6.64	14.05	18.34	22.84	14.04	8.80	9.03	5.07	20.02	26.97	4.06	2.90	5.20	6.60	7.39	4.78	13.30	2.20	0.00	5.87
17	I1_AR5	ActiveIntronRegion	0	15.90	6.39	19.04	13.72	16.53	4.82	25.06	14.65	5.38	5.32	5.32	8.85	16.60	2.16	4.40	4.86	12.34	5.43	5.94	9.70	3.79	1.22	5.01
18	I1_AR6	ActiveIntronRegion	1	4.32	3.65	21.99	5.10	5.81	4.38	20.59	3.25	4.81	13.78	2.45	29.98	14.22	2.57	3.46	9.56	10.54	2.26	5.45	8.26	5.69	1.48	3.88
19	ER2a	ExonRegion	0	4.23	41.69	22.67	19.08	29.43	88.02	56.93	24.20	35.82	52.76	32.86	6.49	21.11	46.29	11.61	44.58	54.46	64.67	22.30	80.85	49.58	41.67	38.18
20	ER2b	ExonRegion	0	35.94	150.72	122.41	130.38	164.70	220.14	231.39	116.16	152.90	235.53	221.16	291.61	246.30	192.79	66.95	139.38	208.86	160.33	132.24	291.89	110.45	248.74	149.49
21	E2a_E3a	KnownJunction	0	31.34	232.66	184.17	214.36	263.41	295.63	361.83	153.33	200.17	273.16	262.75	343.76	258.91	241.80	100.01	233.10	239.74	280.10	207.35	365.67	157.10	335.07	213.83
22	ER3a	ExonRegion	1	57.21	169.40	233.34	210.53	230.73	361.22	307.98	189.92	194.17	326.43	291.26	489.11	350.55	329.03	104.74	279.62	266.73	377.43	221.16	418.71	189.52	425.60	313.60
23	I3	Intron	0	11.19	8.61	9.44	12.89	17.29	7.33	34.85	7.57	6.06	4.83	3.63	22.12	20.00	5.83	3.27	3.49	4.65	4.11	3.74	10.50	2.07	9.55	3.45
24	I3_AR1	ActiveIntronRegion	0	17.17	8.38	11.85	9.48	20.28	7.08	33.28	11.91	9.39	5.23	5.83	21.37	17.59	7.48	3.08	4.82	8.69	6.80	6.22	9.80	3.63	10.65	3.98
25	I3_SR1	SilentIntronRegion	0	5.27	8.93	7.09	16.44	14.44	7.64	36.77	3.26	2.75	4.46	1.46	23.08	22.62	4.22	3.50	2.18	0.63	1.43	1.27	11.30	0.52	8.54	2.95
26	E4a_E7a	KnownJunction	0	60.08	207.66	207.27	140.94	170.20	407.95	336.34	156.00	151.62	330.38	327.45	335.66	235.54	237.92	111.63	202.08	248.25	303.02	156.71	308.34	183.79	293.55	156.73
27	ER4a	ExonRegion	0	41.34	166.96	205.33	153.23	195.15	352.64	276.40	144.44	150.68	312.45	342.25	385.03	241.69	269.44	108.12	208.64	279.70	372.14	164.26	336.03	206.85	330.24	174.53
28	I4	Intron	0	8.87	10.70	9.61	10.61	17.54	11.14	33.85	5.44	4.98	5.95	7.73	22.44	25.97	13.91	7.39	9.02	11.49	4.71	3.89	10.64	6.28	14.51	7.72
29	I4_AR1	ActiveIntronRegion	0	18.59	10.20	9.70	10.78	17.82	19.31	45.00	3.47	7.16	4.83	8.89	31.42	32.92	11.85	7.40	9.31	7.77	1.63	2.39	16.32	2.37	9.02	6.11
30	I4_SR1	SilentIntronRegion	0	7.20	12.20	8.47	9.97	16.91	9.65	29.92	6.48	4.21	6.25	6.40	21.17	21.99	12.57	6.70	8.17	8.33	4.55	3.43	8.11	5.31	14.86	7.25
31	I4_AR2	ActiveIntronRegion	0	6.91	5.94	13.57	12.79	19.62	9.87	38.85	3.43	5.95	5.87	11.52	19.80	34.49	20.31	9.85	11.84	25.58	7.75	6.74	15.00	12.87	17.80	10.72
32	E5_Aa	NovelBoundary	0	32.38	26.90	18.21	21.51	11.97	8.06	25.57	14.09	10.82	6.31	20.53	61.97	27.60	20.01	14.09	8.29	23.28	2.40	0.00	15.53	14.02	25.66	8.71
33	ER5a	ExonRegion	1	5.22	3.21	0.61	0.00	24.12	5.95	19.43	1.34	0.00	0.92	4.68	12.99	28.67	7.54	3.32	9.73	14.59	1.52	2.52	8.00	2.24	11.90	4.78
34	E5_Da	NovelBoundary	1	15.11	15.92	19.60	26.67	25.64	17.32	95.48	3.49	7.61	8.03	12.85	43.66	67.53	23.37	6.30	18.63	3.55	8.25	0.00	15.47	11.18	34.47	0.00
35	I5_AR1	ActiveIntronRegion	0	1.94	4.51	5.45	9.64	16.28	3.72	32.94	3.66	1.89	1.25	6.71	25.61	26.06	12.08	4.25	13.41	3.65	4.11	2.04	3.55	5.58	15.87	5.13
36	ER6a	ExonRegion	0	0.00	0.45	0.00	0.00	0.15	0.00	0.59	0.00	0.00	0.00	0.32	0.00	0.26	0.00	0.16	0.00	0.92	0.00	0.00	0.00	0.00	0.12	0.00
37	I6	Intron	0	13.49	15.56	10.69	13.33	17.92	15.48	39.95	12.55	11.83	11.49	15.11	40.01	32.08	16.02	6.17	11.25	12.40	5.19	5.73	16.34	6.96	33.70	9.20
38	I6_AR1	ActiveIntronRegion	0	7.82	13.67	15.04	10.13	10.81	13.61	32.74	8.37	10.69	10.90	13.47	31.81	23.04	16.82	3.53	13.47	17.99	2.99	4.80	17.53	7.42	24.61	8.85
39	I6_SR1	SilentIntronRegion	0	10.16	15.72	6.60	12.40	14.81	13.72	36.92	9.08	11.03	9.29	15.15	38.05	34.73	15.44	7.06	8.15	11.59	4.60	3.62	10.86	6.76	28.21	8.44
40	I6_AR2	ActiveIntronRegion	0	20.66	16.63	12.32	16.38	25.80	18.59	47.85	18.95	13.43	14.25	16.14	47.42	35.08	16.17	6.90	13.18	9.77	7.24	8.59	21.47	6.90	45.40	10.25
41	E7_Aa	NovelBoundary	1	55.57	33.02	39.00	29.37	43.21	28.17	55.51	42.35	20.92	15.96	18.48	38.86	85.55	38.32	9.52	29.48	46.38	11.86	16.19	37.20	44.05	39.99	18.18
42	ER7a	ExonRegion	0	76.41	208.53	224.71	189.23	191.23	413.37	325.12	169.91	186.71	325.43	304.87	402.92	322.22	298.46	125.41	318.74	271.46	560.09	226.76	363.79	253.19	346.72	335.07
43	E7a_E8a	KnownJunction	0	16.45	111.43	221.67	149.63	114.01	272.57	173.96	133.49	125.55	246.51	169.78	262.59	228.72	233.86	144.14	155.69	184.95	443.18	190.50	235.73	235.37	279.59	266.25
44	E7a_E10a	NovelJunction	0	0.00	0.00	1.42	3.83	0.00	7.84	11.17	6.28	12.90	4.46	4.79	7.65	12.01	10.07	9.64	7.52	4.77	11.40	4.80	6.52	21.07	0.00	4.35
45	I7_SR1	SilentIntronRegion	0	14.98	10.01	19.61	14.81	14.52	4.86	19.77	14.63	5.66	8.66	2.39	7.31	5.40	1.50	2.55	2.38	5.95	3.27	3.22	6.47	0.73	4.08	2.80
46	ER8a	ExonRegion	0	49.12	102.05	216.32	143.75	104.20	240.46	197.55	137.90	133.08	274.90	266.39	211.13	170.01	237.00	109.64	234.48	263.60	434.34	178.04	265.94	303.43	223.18	219.93
47	E8a_E9a	KnownJunction	0	105.50	167.73	183.26	181.73	172.24	378.70	321.77	136.28	156.31	313.75	207.63	145.25	208.10	196.07	68.85	266.60	190.09	644.27	204.52	315.88	242.41	213.03	218.96
48	ER9a	ExonRegion	0	102.23	166.53	219.41	168.42	151.79	386.24	283.03	128.42	154.75	278.17	210.60	169.89	231.25	231.37	126.39	261.88	232.13	401.70	187.50	294.27	272.28	231.73	235.58
49	E9a_E10a	KnownJunction	0	76.09	123.79	160.17	108.44	121.65	287.90	276.77	76.36	130.76	195.58	180.10	105.78	181.97	223.20	127.94	206.36	165.40	344.52	192.01	309.74	262.74	166.98	210.68
50	ER10a	ExonRegion	0	75.28	128.00	163.50	110.39	168.10	289.70	225.36	76.53	131.24	194.88	170.02	111.63	134.91	197.79	97.68	237.65	175.34	308.97	161.89	245.81	250.32	173.46	186.56
51	E10a_E11a	KnownJunction	0	128.32	176.02	156.85	126.29	249.66	319.87	294.43	92.79	142.50	223.63	172.04	86.13	134.73	183.47	96.79	191.23	186.82	272.31	102.40	220.83	217.09	168.21	168.93
52	ER11a	ExonRegion	0	73.94	110.08	194.43	132.11	140.68	261.39	208.34	116.73	145.70	241.49	208.09	124.21	171.85	239.70	106.10	216.45	197.25	342.74	168.15	253.78	246.91	180.34	192.91
53	E11a_E12a	KnownJunction	0	78.24	132.94	244.58	97.49	105.94	262.35	247.49	126.10	131.42	246.32	231.27	83.13	141.22	184.59	107.05	157.48	206.64	272.68	120.66	286.67	278.00	127.06	147.00
54	ER12a	ExonRegion	0	86.00	161.01	188.21	148.14	187.73	320.52	239.71	113.89	145.24	245.53	221.77	111.67	121.36	246.56	113.06	203.04	184.11	401.45	152.92	250.63	227.82	175.98	200.93
55	E12a_E13a	KnownJunction	0	124.69	229.63	205.85	168.31	266.89	467.12	356.75	142.86	128.50	246.59	217.79	77.28	120.61	277.89	146.12	256.17	149.32	352.35	138.26	276.89	233.09	203.66	195.48
56	I12_AR5	ActiveIntronRegion	0	4.56	4.76	1.18	2.31	7.81	2.08	13.45	1.36	2.68	2.83	1.25	16.25	18.58	0.43	0.87	0.96	4.16	2.58	1.03	3.52	2.50	6.53	0.95
57	ER13a	ExonRegion	0	72.49	155.08	189.19	141.72	171.36	282.09	230.54	103.57	106.41	208.55	157.93	90.36	83.75	187.21	124.15	185.17	175.66	283.97	113.41	196.43	195.16	151.29	170.20
58	E13a_E14a	KnownJunction	0	90.98	192.27	231.87	125.43	239.05	351.62	233.09	128.77	127.02	241.06	190.00	67.22	89.28	211.55	149.45	170.30	190.65	316.33	116.43	226.84	205.60	170.05	223.22
59	I13	Intron	0	18.05	8.06	9.83	21.19	31.51	24.96	33.07	11.75	11.91	14.70	10.84	15.05	13.80	7.42	4.22	7.22	7.78	7.53	3.10	10.82	4.94	17.84	5.49
60	I13_AR1	ActiveIntronRegion	0	18.07	8.07	9.85	21.22	31.56	24.99	33.11	11.77	11.92	14.72	10.86	15.07	13.82	7.43	4.22	7.23	7.79	7.54	3.10	10.84	4.95	17.87	5.50
61	E14_Aa	NovelBoundary	0	23.56	18.75	39.12	36.66	32.85	10.33	46.68	26.99	23.21	18.05	7.84	31.21	19.64	7.89	4.45	11.45	8.79	26.41	0.00	14.70	22.73	10.84	16.05
62	ER14a	ExonRegion	0	76.88	186.38	203.32	175.19	214.49	192.45	190.75	124.47	94.36	154.42	46.40	83.58	55.12	47.34	53.03	42.80	41.07	66.53	60.86	97.41	32.61	104.13	51.50
63	ER14b	ExonRegion	0	11.99	22.71	5.51	5.68	11.15	20.78	6.62	3.17	0.00	1.72	0.00	0.00	0.00	0.00	0.00	1.98	0.00	0.00	0.00	0.00	0.37	1.39	0.98