Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NFATC1 Gene 0 55.70 0.68 6.08 4.68 19.69 5.32 5.72 11.48 9.30 3.58 65.65 7.62 18.36 46.31 38.32 75.24 14.71 1.25 0.19 0.21 19.60 35.62 26.24 2 415320 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 318065 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 253506 Transcript 0 3.17 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 397790 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 329101 Transcript 0 7.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.43 3.69 6.07 3.78 0.30 0.00 0.00 0.00 1.80 3.41 3.74 7 427363 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 397794 Transcript 0 0.53 0.00 0.61 0.17 0.00 0.00 0.33 0.65 0.46 0.43 7.01 0.00 0.59 4.26 2.54 7.80 0.41 0.00 0.00 0.00 3.03 1.56 3.67 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.59 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 1.32 0.00 1.76 10 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.24 0.00 4.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 5.12 0.00 0.00 1.02 0.00 2.94 0.30 0.38 0.00 0.00 0.00 0.28 1.07 12 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 23.69 0.00 0.00 2.41 0.00 7.60 3.55 1.82 0.00 0.00 0.00 7.96 4.35 13 ER1c ExonRegion 0 2.63 0.00 1.29 0.09 0.67 0.46 0.07 1.13 0.85 0.87 14.27 0.00 0.98 10.07 2.99 17.69 3.33 0.49 0.00 0.00 1.17 4.86 4.87 14 E1a_E4b KnownJunction 0 0.00 0.00 3.16 1.90 0.00 0.00 2.25 2.42 0.00 3.33 33.69 0.00 7.79 16.83 5.19 67.16 3.83 0.00 0.00 0.00 9.27 16.66 15.28 15 E1a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 Ix_AR2 ActiveIntronRegion 0 6.71 0.00 0.27 0.39 4.26 0.00 0.51 0.24 0.97 0.44 3.37 0.00 0.00 4.14 5.39 4.63 0.63 0.00 0.00 0.00 1.68 0.00 10.50 17 Ix_SR3 SilentIntronRegion 0 12.43 0.00 1.88 0.33 3.22 0.48 0.87 1.26 1.76 0.45 3.31 0.94 0.93 6.76 3.57 2.95 0.00 0.00 0.00 0.00 0.87 0.85 10.53 18 Ix_AR3 ActiveIntronRegion 0 8.54 0.00 2.05 0.42 2.09 0.44 1.10 0.61 0.65 0.41 3.69 0.00 0.55 7.50 6.39 4.60 0.00 0.33 0.00 0.00 0.53 0.97 13.68 19 E2_Aa NovelBoundary 0 14.52 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.32 0.00 0.00 2.41 8.90 40.67 0.00 0.00 0.00 0.00 5.87 3.12 24.67 20 ER2a ExonRegion 0 7.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.43 3.69 6.07 3.78 0.30 0.00 0.00 0.00 1.80 3.41 3.74 21 ER2b ExonRegion 0 13.04 0.00 1.28 0.00 0.95 0.65 0.68 1.72 0.02 0.20 11.89 0.00 5.48 9.89 6.19 11.78 1.15 0.00 0.00 0.00 8.54 8.00 7.41 22 E2a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 4.11 5.01 0.00 1.45 24.90 0.00 0.00 5.36 23.12 4.27 0.00 0.00 0.00 0.00 20.02 2.33 4.18 23 Ix_AR1 ActiveIntronRegion 0 10.58 0.00 0.00 1.36 0.00 0.00 5.30 1.73 2.47 1.15 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.35 19.58 24 Ix_AR6 ActiveIntronRegion 0 17.64 0.00 0.00 0.00 0.00 0.00 1.64 1.73 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.25 25 Ix_AR7 ActiveIntronRegion 0 21.27 0.00 0.00 0.00 0.00 0.00 2.52 1.73 1.24 0.33 0.00 0.00 0.00 1.08 0.69 1.70 0.00 0.00 0.00 0.00 0.00 0.00 3.50 26 Ix_SR2 SilentIntronRegion 0 18.47 0.00 0.00 0.12 0.49 0.00 3.97 1.57 1.24 1.15 0.00 0.00 0.00 1.62 2.90 2.97 0.00 0.00 0.00 0.00 0.00 0.00 2.94 27 Ix_AR8 ActiveIntronRegion 0 20.46 0.00 0.00 1.36 2.68 0.00 3.97 0.00 1.24 1.15 0.00 0.00 0.00 1.62 2.90 2.97 0.00 0.00 0.00 0.00 0.00 0.00 0.49 28 Ix_AR9 ActiveIntronRegion 0 19.08 0.70 1.70 1.26 2.22 0.00 2.99 1.33 0.69 0.79 1.00 2.46 0.66 0.28 0.54 1.93 1.13 0.00 0.00 0.00 0.38 1.32 9.14 29 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 30 ER4a ExonRegion 0 1.06 0.00 1.23 0.34 0.00 0.00 0.66 1.30 0.93 0.86 14.01 0.00 1.17 8.53 5.08 15.60 0.83 0.00 0.00 0.00 6.06 3.13 6.61 31 ER4b ExonRegion 0 19.08 0.00 6.60 1.38 4.53 3.53 2.39 12.72 10.99 3.51 96.82 13.68 40.24 77.04 68.71 113.64 24.43 0.13 0.00 0.40 36.25 42.10 39.98 32 E4a_E5a KnownJunction 0 38.08 0.00 1.71 1.93 21.90 14.71 2.08 15.65 16.84 1.53 116.92 10.65 32.79 56.74 56.86 192.94 37.77 0.00 0.00 0.00 30.46 42.25 42.77 33 ER5a ExonRegion 0 22.46 0.00 5.28 1.05 6.91 2.49 1.40 9.90 5.91 2.99 74.97 4.82 15.71 62.97 64.03 99.64 16.50 4.39 0.00 0.68 19.71 36.67 44.27 34 E5a_E6a KnownJunction 1 21.71 0.00 4.67 3.56 7.72 5.39 0.00 11.91 11.20 7.68 94.08 19.36 0.00 62.86 65.89 121.42 21.22 4.27 0.00 0.00 40.65 46.29 32.78 35 ER6a ExonRegion 1 38.62 0.08 6.68 6.06 9.48 2.16 4.27 9.09 9.39 7.40 99.88 6.16 7.00 68.03 73.62 131.14 25.11 5.09 0.80 0.53 27.76 42.56 35.50 36 E6a_E7a KnownJunction 1 72.16 0.00 0.00 9.29 16.47 10.39 6.27 7.39 12.59 7.92 122.14 6.15 0.00 67.81 77.76 130.82 13.56 6.22 0.00 0.00 32.74 46.90 34.32 37 ER7a ExonRegion 0 58.79 2.30 4.78 8.02 16.02 7.85 3.97 5.59 10.25 7.76 111.55 8.23 13.74 87.88 74.31 150.91 27.99 2.16 0.94 0.63 36.78 47.62 41.66 38 E7a_E8a KnownJunction 1 28.97 0.00 3.34 4.66 12.90 5.11 6.32 4.93 16.72 6.74 65.81 6.30 7.14 81.99 83.32 220.28 17.02 0.00 0.00 0.00 46.95 45.74 38.16 39 ER8a ExonRegion 0 57.34 0.74 9.17 5.95 21.77 12.81 13.06 14.72 9.81 4.36 116.11 10.04 29.77 95.34 82.76 196.71 29.97 3.51 0.05 0.89 45.42 67.88 50.30 40 E8a_E9a KnownJunction 0 25.19 0.00 13.69 7.46 66.47 5.79 22.74 18.20 19.65 11.36 105.29 25.51 41.88 107.48 88.76 212.51 41.51 6.26 0.00 2.49 56.28 66.62 48.49 41 ER9a ExonRegion 0 44.98 0.00 14.77 8.98 50.89 16.37 11.54 19.72 19.89 4.59 137.20 22.27 26.30 127.38 102.74 215.48 42.79 5.31 2.79 1.63 46.20 81.67 55.01 42 E9a_E10a KnownJunction 1 59.27 0.00 17.09 7.19 53.31 11.98 11.88 22.30 18.78 1.29 157.93 24.31 6.82 103.13 105.32 217.81 32.54 0.00 0.00 0.00 40.59 93.63 69.23 43 Ix_AR1 ActiveIntronRegion 0 8.28 0.00 1.16 0.00 3.13 0.00 1.28 3.59 3.20 0.43 1.68 0.90 0.00 1.25 2.44 5.58 1.52 0.00 0.00 0.00 2.21 9.02 2.73 44 ER10a ExonRegion 0 44.37 2.34 9.55 6.05 33.36 12.44 4.98 21.85 17.23 9.44 146.78 8.50 41.79 115.35 99.45 194.66 49.71 6.38 0.00 0.00 40.13 86.51 75.71 45 E10_Da NovelBoundary 0 97.35 6.31 18.66 5.26 7.72 0.00 6.27 15.24 7.75 3.14 63.23 6.30 12.82 52.86 73.80 110.23 33.94 5.02 4.61 0.00 31.82 48.25 6.83 46 E10a_E11a KnownJunction 0 79.50 0.00 3.08 2.03 20.37 19.76 20.31 15.77 15.31 6.47 105.76 11.70 32.63 86.64 28.56 92.03 16.46 0.00 0.00 0.00 29.41 24.31 28.26 47 Ix_AR1 ActiveIntronRegion 0 18.79 0.77 1.47 0.77 6.48 0.78 2.26 2.69 1.57 1.46 15.14 1.67 4.36 10.90 15.62 21.88 6.74 1.31 0.00 0.00 3.66 12.75 10.18 48 Ix_SR1 SilentIntronRegion 0 16.60 0.30 2.03 1.45 1.73 0.00 2.44 4.12 2.85 1.31 3.49 0.92 0.50 2.66 4.58 9.39 0.00 0.95 0.00 0.00 0.28 8.94 2.65 49 ER11a ExonRegion 0 21.35 0.00 3.08 2.48 9.60 4.23 5.22 5.05 9.64 2.23 43.99 6.18 13.97 35.54 19.85 43.22 12.30 0.61 0.00 0.28 13.17 25.16 14.02 50 E11_Da KnownBoundary 0 6.67 0.00 0.00 0.00 0.00 0.00 0.00 6.41 0.00 0.00 21.22 0.00 0.00 9.36 0.00 23.67 0.00 0.00 0.00 0.00 12.17 8.51 20.06 51 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 7.81 0.00 8.04 4.31 2.81 0.00 26.80 13.65 0.00 26.49 0.00 36.91 17.30 0.00 0.00 0.00 5.50 5.51 7.43 52 ER11b ExonRegion 0 9.99 0.00 1.13 1.69 5.49 1.36 1.76 5.30 2.92 0.75 19.13 1.91 2.01 12.67 3.47 16.05 4.64 0.46 0.00 0.00 9.77 9.53 7.93 53 E11c_E12a KnownJunction 0 24.37 0.00 1.51 3.36 4.07 10.73 0.00 2.38 7.84 2.71 33.43 0.00 13.64 22.60 0.00 24.27 13.37 0.00 0.00 0.00 7.54 16.84 19.97 54 ER11c ExonRegion 1 21.17 0.00 1.23 2.73 2.68 7.34 0.00 1.73 8.65 2.29 40.59 0.00 9.38 21.11 2.90 20.80 9.90 0.00 0.00 0.00 8.81 14.58 14.68 55 ER12a ExonRegion 0 120.67 1.50 8.78 9.13 42.11 8.31 10.90 17.30 12.26 4.39 60.82 8.04 14.89 32.48 24.80 56.68 9.07 1.12 0.27 0.00 12.73 41.80 22.16 56 ER12b ExonRegion 0 12.70 0.00 1.23 0.00 0.00 0.00 0.00 1.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 ER12c ExonRegion 0 3.17 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00