Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KDSR Gene 0 54.53 40.19 129.30 78.14 73.12 96.01 55.15 58.57 73.39 58.04 51.17 42.89 62.69 55.42 26.00 34.05 39.65 36.56 29.92 37.58 49.70 177.05 112.24 2 406396 Transcript 0 43.68 55.29 175.68 125.30 74.54 161.59 61.43 63.68 104.45 92.47 94.94 58.37 72.28 120.14 37.78 93.80 84.07 123.22 80.04 56.72 132.46 313.61 288.50 3 326575 Transcript 0 0.00 0.00 1.74 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 4 IG41_AR1 ActiveIntergenicRegion 0 5.89 12.28 29.98 16.13 9.02 29.77 5.04 6.32 20.98 9.44 3.90 2.25 0.57 9.46 13.98 3.92 1.94 9.48 12.14 8.96 11.29 7.33 4.44 5 ER1a ExonRegion 0 5.34 4.51 6.83 1.65 2.04 21.80 5.24 1.67 4.79 5.95 5.01 0.00 0.00 5.43 2.81 2.39 5.14 12.46 6.02 7.86 15.98 10.88 19.98 6 E1_Ab KnownBoundary 0 0.00 8.75 7.42 4.43 3.90 98.92 37.76 10.23 9.84 14.99 24.95 0.00 0.00 9.54 9.64 26.83 24.87 52.11 3.95 5.94 53.38 19.53 107.47 7 ER1b ExonRegion 0 4.83 7.08 23.72 15.29 7.12 41.74 21.91 10.57 16.68 20.93 25.20 3.42 5.75 20.97 9.57 16.26 28.27 32.98 10.34 20.41 57.99 42.08 60.87 8 E1_Da NovelBoundary 0 0.00 0.00 3.19 5.73 0.00 0.00 0.00 1.81 8.01 4.27 2.47 0.00 0.00 0.00 0.00 0.00 4.39 6.92 13.65 5.43 3.15 2.39 25.10 9 E1a_E2a KnownJunction 0 2.74 6.31 66.20 46.98 6.62 23.05 13.43 24.93 44.07 46.82 38.48 5.40 6.82 37.97 22.13 7.43 30.39 45.14 11.58 48.51 61.41 48.31 109.35 10 I1_AR1 ActiveIntronRegion 0 2.32 4.31 20.26 11.88 7.31 4.88 8.60 12.69 17.93 11.83 5.59 2.57 7.83 6.39 3.44 5.69 2.15 9.49 6.48 3.81 10.84 12.25 19.29 11 I1_SR2 SilentIntronRegion 0 4.82 1.63 15.94 16.42 8.96 11.58 13.52 12.70 13.67 18.48 4.52 2.77 7.36 0.89 2.02 6.50 6.26 5.44 8.89 9.25 9.15 13.91 17.79 12 I1_AR2 ActiveIntronRegion 0 5.75 8.90 26.83 18.49 9.74 9.07 10.47 10.37 12.70 16.21 2.86 7.29 10.15 3.05 2.17 1.71 5.97 4.32 3.78 5.65 3.03 12.74 11.10 13 I1_SR3 SilentIntronRegion 0 9.15 6.04 32.17 19.16 15.01 9.04 15.72 10.73 11.00 12.61 1.55 3.76 6.63 2.11 1.61 2.83 1.23 1.83 5.27 6.42 2.19 13.27 10.11 14 E2_Aa NovelBoundary 0 7.26 3.03 45.27 26.44 33.87 27.43 17.36 4.93 19.88 11.58 2.68 5.55 13.47 0.00 0.00 4.02 4.77 4.52 13.65 3.13 2.66 14.08 7.51 15 ER2a ExonRegion 0 25.52 18.46 147.21 77.91 70.64 88.43 46.47 56.77 77.40 66.90 73.32 32.09 43.04 60.54 25.89 46.53 71.37 74.20 38.83 59.83 59.06 183.30 182.89 16 E2a_E3a KnownJunction 1 42.08 60.45 199.70 113.21 85.65 144.41 70.00 66.70 110.94 95.04 96.18 51.32 82.30 88.88 14.59 58.53 100.89 87.72 56.66 81.17 80.06 241.26 165.60 17 ER3a ExonRegion 0 36.24 47.38 197.22 123.50 80.51 169.80 65.71 69.32 122.02 109.08 122.89 59.63 97.83 108.62 43.42 68.36 98.16 110.99 72.70 94.92 115.29 371.60 233.64 18 E3a_E4a KnownJunction 0 30.30 62.69 220.51 160.19 65.37 213.80 76.80 73.07 125.90 123.62 158.88 84.18 138.63 76.34 36.34 94.93 90.79 108.61 69.18 117.54 146.54 405.55 275.55 19 I3_AR1 ActiveIntronRegion 0 5.65 4.44 14.18 17.01 8.45 6.12 10.55 4.78 9.83 6.41 0.47 1.05 2.08 0.65 1.66 0.00 0.00 0.00 1.55 2.88 0.00 3.45 2.14 20 ER4a ExonRegion 0 28.89 40.95 252.65 157.21 67.14 204.91 68.79 98.68 145.37 136.22 173.43 80.95 122.23 129.95 71.04 72.10 133.64 104.48 59.60 87.01 122.54 336.11 233.11 21 E4a_E5a KnownJunction 0 45.56 50.45 300.14 131.25 104.41 223.91 95.13 108.35 150.11 120.02 163.67 99.78 90.74 149.04 91.48 67.33 154.93 96.30 57.51 99.14 114.10 365.75 272.56 22 ER5a ExonRegion 0 32.74 45.46 233.31 141.88 88.58 160.76 78.87 92.15 167.07 113.93 128.66 81.90 100.10 150.30 52.83 79.04 107.38 101.66 79.60 101.95 145.79 390.75 284.21 23 E5a_E6a KnownJunction 0 45.12 82.02 296.41 224.41 97.20 250.42 85.72 103.55 157.35 135.68 136.51 108.79 87.82 163.87 55.01 143.89 115.75 180.24 132.80 81.56 167.42 558.39 495.02 24 E5a_E7a KnownJunction 0 0.00 0.00 1.74 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 25 ER6a ExonRegion 0 45.80 58.17 245.66 158.43 67.17 176.64 76.49 85.54 161.50 120.81 130.56 79.98 131.81 184.34 67.70 124.54 128.56 158.03 86.77 87.38 196.13 381.50 378.64 26 E6a_E7a KnownJunction 0 100.91 116.49 282.66 215.69 171.39 333.96 118.27 100.63 169.41 177.48 194.79 85.83 116.06 235.98 56.62 191.57 167.09 259.87 166.50 95.68 273.49 553.73 523.36 27 E7_Aa NovelBoundary 0 16.60 17.63 7.81 11.75 45.59 0.00 4.50 5.09 5.35 9.05 0.00 0.00 12.50 0.00 0.00 0.00 0.00 15.71 17.13 6.07 8.09 3.06 14.51 28 ER7a ExonRegion 0 67.07 66.55 245.19 141.50 108.65 257.71 112.19 91.98 154.46 117.99 178.03 93.70 98.04 181.98 54.02 121.50 152.23 178.22 96.77 91.11 226.38 405.52 435.18 29 E7_Da NovelBoundary 0 3.48 8.22 27.11 23.51 22.16 42.70 18.77 28.51 48.29 19.13 9.11 5.70 0.00 6.95 0.00 7.60 13.37 9.29 4.71 9.08 6.30 28.41 18.35 30 E7a_E8a KnownJunction 0 99.13 76.57 261.37 118.77 126.23 182.28 122.95 88.93 143.26 97.54 162.99 89.73 117.20 231.50 75.04 114.76 133.52 144.34 83.01 91.08 207.51 392.57 425.45 31 I7 Intron 0 5.95 10.89 10.67 21.02 25.91 36.70 21.89 19.77 27.27 15.86 3.23 3.09 7.28 3.91 2.11 4.18 3.68 4.26 5.75 8.50 5.11 10.32 7.99 32 I7_SR1 SilentIntronRegion 0 6.17 6.77 12.32 16.82 15.75 25.51 16.54 11.00 21.73 9.42 4.44 2.71 8.02 3.99 1.77 3.26 3.29 4.00 5.74 7.38 4.70 9.22 7.01 33 I7_AR2 ActiveIntronRegion 0 4.82 10.73 10.40 19.83 28.13 46.97 30.53 22.17 30.91 16.48 2.23 4.57 8.06 5.61 1.93 3.58 3.92 1.31 5.27 10.09 2.64 11.42 6.70 34 I7_AR3 ActiveIntronRegion 0 6.26 15.82 10.02 25.70 28.95 36.23 21.81 26.81 29.52 21.24 3.12 3.80 6.89 2.67 2.84 5.20 4.31 4.61 5.67 9.09 7.72 10.72 10.72 35 I7_SR2 SilentIntronRegion 0 6.55 9.80 10.94 23.72 38.18 47.04 19.67 20.55 29.97 17.68 3.15 0.47 5.37 3.21 2.05 4.64 2.17 9.50 6.23 7.46 4.76 10.20 7.59 36 E8_Aa NovelBoundary 0 10.15 17.56 19.01 48.11 37.10 45.03 30.60 15.81 32.12 16.22 2.32 0.00 0.00 0.00 0.00 0.00 3.65 2.03 9.60 9.40 8.90 18.49 29.45 37 ER8a ExonRegion 0 103.23 111.17 228.23 138.01 129.04 235.84 118.51 103.23 175.93 115.66 158.43 103.65 144.05 218.54 65.87 113.26 146.54 144.04 72.16 83.81 221.18 352.07 348.87 38 E8a_E9a KnownJunction 1 154.55 190.30 234.26 151.86 179.54 212.55 160.75 122.11 171.82 152.90 158.88 92.43 193.66 261.88 57.11 99.03 145.39 124.69 84.90 77.98 251.74 377.26 337.10 39 E8a_E10a NovelJunction 0 15.11 0.00 1.33 1.76 4.33 0.00 7.99 0.00 1.16 6.23 0.00 6.30 6.66 4.94 0.00 12.13 0.00 2.57 0.00 0.00 2.78 17.27 21.43 40 E9_Aa NovelBoundary 0 14.15 6.31 11.47 23.81 4.33 7.61 8.57 7.72 7.52 9.11 0.00 0.00 0.00 4.59 0.00 0.00 0.00 2.57 4.80 15.02 6.30 2.51 4.27 41 ER9a ExonRegion 0 147.82 117.27 251.08 160.02 147.61 198.07 115.95 104.37 158.31 119.39 126.62 98.18 140.98 167.49 48.78 97.41 107.70 137.49 68.42 94.91 192.33 359.61 323.52 42 E9a_E10a KnownJunction 1 164.18 103.47 272.73 189.35 172.92 270.19 117.38 112.38 172.54 102.77 112.29 130.09 81.00 225.21 39.19 124.33 131.09 107.86 82.17 88.97 199.29 478.11 330.18 43 E10_Aa NovelBoundary 0 34.97 10.00 23.57 45.42 33.62 16.69 6.32 18.61 14.67 6.80 0.00 0.00 0.00 4.71 0.00 7.09 4.77 1.99 14.21 15.47 3.15 14.02 18.69 44 ER10a ExonRegion 0 167.75 110.59 348.50 215.09 200.49 266.77 150.25 152.64 176.07 142.20 133.53 109.37 160.68 130.40 69.67 80.56 97.29 65.40 71.23 89.15 89.50 449.01 250.11 45 E10_Da KnownBoundary 1 48.30 26.71 89.68 48.05 71.65 71.27 83.64 22.02 32.20 25.57 9.05 42.91 33.28 12.54 22.25 11.71 11.59 1.53 12.42 20.77 14.70 126.69 46.86 46 ER10b ExonRegion 0 21.22 15.25 46.84 26.33 34.88 25.12 21.43 27.03 29.18 22.43 7.84 17.24 25.72 11.09 6.78 6.61 3.80 5.49 8.11 11.13 9.30 63.56 25.50 47 IG40_AR1 ActiveIntergenicRegion 0 8.44 5.61 9.19 15.95 13.36 6.35 7.94 13.26 8.11 6.58 0.00 3.63 11.35 4.51 3.08 0.00 2.12 0.87 1.04 4.35 0.69 8.73 4.62